Three novel lineages of ‘Candidatus liberibacter africanus’ associated with native rutaceous hosts of trioza erytreae in South africa

International Journal of Systematic and Evolutionary Microbiology

Volumn 65, Issue 2, 2015, Pages 723-731

  Roberts, Ronel ^a,b   Steenkamp, Emma T ^a   Pietersen, Gerhard ^a,b  

^a UNIVERSITY OF PRETORIA   (South Africa)

^b PLANT PROTECTION RESEARCH INSTITUTE   (South Africa)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; RNA 16S; BACTERIAL DNA;

AMPLICON; ARTICLE; BACTERIUM; CANDIDATUS LIBERIBACTER AFRICANUS; CONTROLLED STUDY; DENATURATION; DNA EXTRACTION; DNA SEQUENCE; DNA TEMPLATE; GENE SEQUENCE; HOST; HOST RANGE; INSECT; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; REAL TIME POLYMERASE CHAIN REACTION; SOUTH AFRICA; TRIOZA ERYTREAE; ANIMAL; BACTERIAL GENE; BACTERIUM IDENTIFICATION; CITRUS; CLASSIFICATION; GENETICS; HEMIPTERA; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PLANT DISEASE; RHIZOBIACEAE; RUTACEAE;

BACTERIA (MICROORGANISMS); CANDIDATUS LIBERIBACTER; CANDIDATUS LIBERIBACTER AFRICANUS; CITRUS; CLAUSENA; CLAUSENA ANISATA; HEXAPODA; LANCEOLATA; TRIOZA ERYTREAE; TRIOZIDAE; ZANTHOXYLUM;

ANIMALS; BACTERIAL TYPING TECHNIQUES; BASE SEQUENCE; CITRUS; DNA, BACTERIAL; GENES, BACTERIAL; HEMIPTERA; MOLECULAR SEQUENCE DATA; PHYLOGENY; PLANT DISEASES; RHIZOBIACEAE; RNA, RIBOSOMAL, 16S; RUTACEAE; SEQUENCE ANALYSIS, DNA; SOUTH AFRICA;

EID: 84922773500     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.069864-0     Document Type: Article

References (46)

1. Aubert, B. (1987). Trioza erytreae Del Guercio and Diaphorina citri Kuwayama (Homoptera: Psylloidae), the two vectors of citrus greening disease: biological aspects and possible control strategies. Fruits 42, 149–162.
2. Bastianel, C., Garnier-Semancik, M., Renaudin, J., Bové J. M. & Eveillard, S. (2005). Diversity of ‘‘Candidatus Liberibacter asiaticus,’’ based on the omp gene sequence. Appl Environ Microbiol 71, 6473–6478.
3. Belasque, J., Bassanezi, R. B., Yamamoto, P. T., Ayres, A. J., Tachibana, A., Violante, A. R., Tank, R., Jr, Di Giorgi, F., Tersi, F. E. A. & other authors (2010). Lessons from Huanglongbing management in SaõPaulo state, Brazil. J Plant Pathol 92, 285–302.
4. Benson, D. A., Cavanaugh, M., Clark, K., Karsch-Mizrachi, I., Lipman, D. J., Ostell, J. & Sayers, E. W. (2013). GenBank. Nucleic Acids Res 41 (1D), D36–D42.
5. Buitendag, C. H. & von Broembsen, L. A. (1993). Living with citrus greening in South Africa. In Proceedings of the Twelfth Conference of the International Organization of Citrus Virologists, pp. 269–273. Edited by P. Moreno, J. V. da Graça & L. W. Timmer. Riverside, CA: University of California Riverside.
6. Capoor, S. P., Rao, D. G. & Viswanath, S. M. (1967). Diaphorina citri Kuwayama, a vector of the greening disease of citrus in India. Indian J Agric Sci 37, 572–575.
7. Chase, M. W., Salamin, N., Wilkinson, M., Dunwell, J. M., Kesanakurthi, R. P., Haidar, N. & Savolainen, V. (2005). Land plants and DNA barcodes: short-term and long-term goals. Philos Trans R Soc Lond B Biol Sci 360, 1889–1895.
8. Coletta-Filho, H. D., Targon, M. L. P. N., Takita, M. A., De Negri, J. D., Pompeu, J., Jr, Machado, M. A., do Amaral, A. M. & Muller, G. W. (2004). First report of the causal agent of huanglongbing (‘Candidatus Liberibacter asiaticus’) in Brazil. Plant Dis 88, 1382.
9. Davis, M. J., Mondal, S. N., Chen, H., Rogers, M. E. & Brlansky, R. H. (2008). Co-cultivation of ‘Candidatus Liberibacter asiaticus’ with actinobacteria from citrus with huanglongbing. Plant Dis 92, 1547– 1550.
10. Doyle, J. J. & Doyle, J. L. (1990). Isolation of plant DNA from fresh tissue. Focus 12, 13–15.
11. Fagen, J. R., Leonard, M. T., Coyle, J. F., McCullough, C. M., Davis-Richardson, A. G., Davis, M. J. & Triplett, E. W. (2014). Liberibacter crescens gen. nov., sp. nov., the first cultured member of the genus Liberibacter. Int J Syst Evol Microbiol 64, 2461–2466.
12. Garnier, M. & Bové, J. M. (1983). Transmission of the organism associated with citrus greening disease from sweet orange to periwinkle by dodder. Phytopathology 73, 1358–1363.
13. Garnier, M. & Bové, J. M. (1996). Distribution of the huanglongbing (greening) Liberobacter species in fifteen African and Asian countries. In Proceedings of the Thirteenth Conference of the International Organization of Citrus Virologists, pp. 388–391. Edited by J. V. da Graça, R. F. Lee & R. K. Yokomi. Riverside, CA: University of California Riverside.
14. Garnier, M., Jagoueix, S., Toorawa, P., Grisoni, M., Mallessard, R., Dookun, A., Saumtally, S., Autrey, J. C. & Bové, J. M. (1996). Both huanglongbing (greening) Liberobacter species are present in Mauritius and Réunion. In Proceedings of the Thirteenth Conference of the International Organization of Citrus Virologists, pp. 271–275. Edited by J. V. da Graça, P. Moreno & R. K. Yokomi. Riverside, CA: University of California Riverside.
15. Garnier, M., Jagoueix-Eveillard, S., Cronje, P. R., Le Roux, H. F. & Bové, J. M. (2000). Genomic characterization of a liberibacter present in an ornamental rutaceous tree, Calodendrum capense, in the Western Cape Province of South Africa. Proposal of ‘Candidatus Liberibacter africanus subsp. capensis’. Int J Syst Evol Microbiol 50, 2119–2125.
16. Ghosh, D., Bhose, S., Mukherjee, K. & Baranwal, V. K. (2013). Sequence and evolutionary analysis of ribosomal DNA from Huanglongbing (HLB) isolates of Western India. Phytoparasitica 41, 295–305.
17. Halbert, S. E. (2005). The discovery of Huanglongbing in Florida. In Proceedings of the Second International Citrus Canker and Huanglongbing Research Workshop, abstract H-3. Orlando: Florida Citrus Mutual.
18. Hall, T. A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp Ser 41, 95–98.
19. Hocquellet, A., Toorawa, P., Bové, J. M. & Garnier, M. (1999). Detection and identification of the two Candidatus Liberobacter species associated with citrus huanglongbing by PCR amplification of ribosomal protein genes of the b operon. Mol Cell Probes 13, 373– 379.
20. Hung, T. H., Wu, M. L. & Su, H. J. (2000). Identification of alternative hosts of the fastidious bacterium causing citrus greening disease. J Phytopathol 148, 321–326.
21. Jagoueix, S., Bové, J. M. & Garnier, M. (1994). The phloem-limited bacterium of greening disease of citrus is a member of the a subdivision of the Proteobacteria. Int J Syst Bacteriol 44, 379–386.
22. Jagoueix, S., Bové, J. M. & Garnier, M. (1996). PCR detection of the two ‘Candidatus’ Liberobacter species associated with greening disease of citrus. Mol Cell Probes 10, 43–50.
23. Kapur, S. P., Kapoor, S. K., Cheema, S. S. & Dhillon, R. S. (1978). Effect of greening disease on tree and fruit characters of Kinnow mandarin. Punjab Hortic J 18, 76–79.
24. Katoh, K., Misawa, K., Kuma, K. & Miyata, T. (2002). MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res 30, 3059–3066.
25. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111–120.
26. Kress, W. J. & Erickson, D. L. (2007). A two-locus global DNA barcode for land plants: the coding rbcL gene complements the non-coding trnH-psbA spacer region. PLoS ONE 2, e508.
27. Levin, R. A., Wagner, W. L., Hoch, P. C., Nepokroeff, M., Pires, J. C., Zimmer, E. A. & Sytsma, K. J. (2003). Family-level relationships of Onagraceae based on chloroplast rbcL and ndhF data. Am J Bot 90, 107–115.
28. Li, W., Hartung, J. S. & Levy, L. (2006). Quantitative real-time PCR for detection and identification of Candidatus Liberibacter species associated with citrus huanglongbing. J Microbiol Methods 66, 104–115.
29. Liefting, L. W., Weir, B. S., Pennycook, S. R. & Clover, G. R. G. (2009). ‘Candidatus Liberibacter solanacearum’, associated with plants in the family Solanaceae. Int J Syst Evol Microbiol 59, 2274–2276.
30. Lopes, S. A. & Frare, G. F. (2008). Graft transmission and cultivar reaction of citrus to ‘Candidatus Liberibacter americanus’. Plant Dis 92, 21–24.
31. Massonie, G., Garnier, M. & Bové, J. M. (1976). Transmission of Indian citrus decline by Trioza erytreae (Del Guercio), the vector of South African greening. In Proceedings of the Seventh Conference of the International Organization of Citrus Virologists, pp. 18–20. Edited by E. C. Calavan. Riverside, CA: University of California Riverside.
32. McClean, A. P. D. & Oberholzer, P. C. J. (1965). Citrus psylla, a vector of the greening disease of sweet orange. S Afr J Agric Sci 8, 297–298.
33. Moran, V. C. (1968a). The development of the citrus psylla, Trioza erytreae (Del Guercio) (Homoptera: Psyllidae), on Citrus limon and four indigenous host plants. J Entomol Soc S Afr 31, 391–402.
34. Moran, V. C. (1968b). Preliminary observations on the choice of host plants by adults of the citrus psylla, Trioza erytreae (Del Guercio) (Homoptera: Psyllidae). J Entomol Soc S Afr 31, 404–410.
35. Murray, R. G. E. & Stackebrandt, E. (1995). Taxonomic note: implementation of the provisional status Candidatus for incompletely described procaryotes. Int J Syst Bacteriol 45, 186–187.
36. Phahladira, M. N. B., Viljoen, R. & Pietersen, G. (2012). Widespread occurrence of ‘Candidatus Liberibacter africanus subspecies capensis’ in Calodendrum capense in South Africa. Eur J Plant Pathol 134, 39–47.
37. Pietersen, G., Arrebola, E., Breytenbach, J. H. J., Korsten, L., le Roux, H. F., la Grange, H., Lopes, S. A., Meyer, J. B., Pretorius, M. C. & other authors (2010). A survey for ‘Candidatus Liberibacter’ species in South Africa confirms the presence of only ‘Ca. L. africanus’ in commercial citrus. Plant Dis 94, 244–249.
38. Posada, D. (2008). jModelTest: phylogenetic model averaging. Mol Biol Evol 25, 1253–1256.
39. Pretorius, M. C. & van Vuuren, S. P. (2006). Managing Huanglongbing (Citrus greening disease) in the Western Cape. S Afr Fruit J 5, 59–62.
40. Saponari, M., De Bac, G., Breithaupt, J., Loconsole, G., Yokomi, R. K. & Catalano, L. (2010). First report of ‘Candidatus Liberibacter asiaticus’ associated with huanglongbing in sweet orange in Ethiopia. Plant Dis 94, 482.
41. Secor, G. A., Rivera, V. V., Abad, J. A., Lee, I.-M., Clover, G. R. G., Liefting, L. W., Li, X. & De Boer, S. H. (2009). Association of ‘Candidatus Liberibacter solanacearum’ with zebra chip disease of potato established by graft and psyllid transmission, electron microscopy, and PCR. Plant Dis 93, 574–583.
42. Shokrollah, H., Abdullah, T. L., Sijam, K. & Abdullah, S. N. A. (2011). Potential use of selected citrus rootstocks and interstocks against HLB disease in Malaysia. Crop Prot 30, 521–525.
43. Tamura, K. & Nei, M. (1993). Estimation of the number of nucleotide substitutions in the control region of mitochondrial DNA in humans and chimpanzees. Mol Biol Evol 10, 512–526.
44. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731–2739.
45. Teixeira, D. C., Ayres, J., Kitajima, E. W., Danet, L., Jagoueix-Eveillard, S., Saillard, C. & Bové, J. M. (2005a). First report of a huanglongbing-like disease of citrus in Sao Paulo state, Brazil and association of a new liberibacter species, ‘Candidatus Liberibacter americanus’, with the disease. Plant Dis 89, 107.
46. Teixeira, D. C., Saillard, C., Eveillard, S., Danet, J. L., da Costa, P. I., Ayres, A. J. & Bové, J. (2005b). ‘Candidatus Liberibacter americanus’, associated with citrus huanglongbing (greening disease) in SaõPaulo State, Brazil. Int J Syst Evol Microbiol 55, 1857–1862.