Identifcation of differentially expressed longnon-coding RNAs in CD4+ T cells response to latent tuberculosis infection

Journal of Infection

Volumn 69, Issue 6, 2014, Pages 558-568

  Yi, Zhengjun ^a   Li, Jianhua ^a   Gao, Kunshan ^a   Fu, Yurong ^a  

^a WEIFANG MEDICAL UNIVERSITY   (China)

Author keywords

CD4+ T cell; LncRNA; MRNA; Signaling pathway; Tuberculosis

Indexed keywords

CYTOKINE; CYTOKINE RECEPTOR; LONG UNTRANSLATED RNA; MITOGEN ACTIVATED PROTEIN KINASE; TOLL LIKE RECEPTOR; MESSENGER RNA; TRANSCRIPTOME;

ADULT; ARTICLE; CD4+ T LYMPHOCYTE; CONTROLLED STUDY; FEMALE; GENE EXPRESSION; GENE LOCUS; GENE ONTOLOGY; HUMAN; HUMAN CELL; INTRON; LATENT TUBERCULOSIS; LUNG TUBERCULOSIS; MAJOR CLINICAL STUDY; MALE; MICROARRAY ANALYSIS; REAL TIME POLYMERASE CHAIN REACTION; SIGNAL TRANSDUCTION; ADOLESCENT; GENETICS; IMMUNOLOGY; ISOLATION AND PURIFICATION; METABOLISM; MIDDLE AGED; NORMAL HUMAN; TUBERCULOSIS; YOUNG ADULT;

ADOLESCENT; ADULT; CD4-POSITIVE T-LYMPHOCYTES; FEMALE; HEALTHY VOLUNTEERS; HUMANS; LATENT TUBERCULOSIS; MALE; MICROARRAY ANALYSIS; MIDDLE AGED; REAL-TIME POLYMERASE CHAIN REACTION; RNA, LONG NONCODING; RNA, MESSENGER; TRANSCRIPTOME; TUBERCULOSIS; YOUNG ADULT;

EID: 84922766055     PISSN: 01634453     EISSN: 15322742     Source Type: Journal    
DOI: 10.1016/j.jinf.2014.06.016     Document Type: Article

References (38)

1. Parkash O. Vaccine against tuberculosis: a view. J Med Microbiol 2014, 63(Pt 6):777-779.
2. Dorhoi A., Iannaccone M., Maertzdorf J., Nouailles G., Weiner J., Kaufmann S.H. Reverse translation in tuberculosis: neutrophils provide clues for understanding development of active disease. Front Immunol 2014, 5:36.
3. Lin P.L., Flynn J.L. Understanding latent tuberculosis: a moving target. J Immunol 2010, 185:15-22.
4. Govender L., Abel B., Hughes E.J., Scriba T.J., Kagina B.M., de Kock M., et al. Higher human CD4 T cell response to novel Mycobacterium tuberculosis latency associated antigens Rv2660 and Rv2659 in latent infection compared with tuberculosis disease. Vaccine 2010, 29:51-57.
5. + T cell responses discriminate between latent infection and active disease. Nat Med 2011, 17:372-376.
6. + T cell immunity. J Immunol 2014, 192:2120-2132.
7. Bonasio R., Tu S., Reinberg D. Molecular signals of epigenetic states. Science 2010, 330:612-616.
8. Mizutani R., Wakamatsu A., Tanaka N., Yoshida H., Tochigi N., Suzuki Y., et al. Identification and characterization of novel genotoxic stress-inducible nuclear long noncoding RNAs in mammalian cells. PLoS One 2012, 7:e34949.
9. Vislovukh A., Vargas T.R., Polesskaya A., Groisman I. Role of 3'-untranslated region translational control in cancer development, diagnostics and treatment. World J Biol Chem 2014, 5:40-57.
10. Lee J.T. Epigenetic regulation by long noncoding RNAs. Science 2012, 338:1435-1439.
11. Nagano T., Fraser P. No-nonsense functions for long noncoding RNAs. Cell 2011, 145:178-181.
12. Gupta R.A., Shah N., Wang K.C., Kim J., Horlings H.M., Wong D.J., et al. Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. Nature 2010, 464:1071-1076.
13. Kanehisa M., Goto S., Furumichi M., Tanabe M., Hirakawa M. KEGG for representation and analysis of molecular networks involving diseases and drugs. Nucleic Acids Res 2010, 38:D355-D360.
14. Zhang T., Jiang M., Chen L., Niu B., Cai Y. Prediction of gene phenotypes based on GO and KEGG pathway enrichment scores. Biomed Res Int 2013, 2013:870795.
15. Tsai M.C., Manor O., Wan Y., Mosammaparast N., Wang J.K., Lan F., et al. Long noncoding RNA as modular scaffold of histone modification complexes. Science 2010, 329:689-693.
16. Lee C., Kikyo N. Strategies to identify long noncoding RNAs involved in gene regulation. Cell Biosci 2012, 2:37.
17. Huarte M., Guttman M., Feldser D., Garber M., Koziol M.J., Kenzelmann-Broz D., et al. A large intergenic noncoding RNA induced by p53 mediates global gene repression in the p53 response. Cell 2010, 142:409.
18. Jin G., Sun J., Isaacs S.D., Wiley K.E., Kim S.T., Chu L.W., et al. Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk. Carcinogenesis 2011, 32:1655-1659.
19. Sui W., Li H., Ou M., Tang D., Dai Y. Altered long non-coding RNA expression profile in patients with IgA-negative mesangial proliferative glomerulonephritis. Int J Mol Med 2012, 30:173-178.
20. Ting D.T., Lipson D., Paul S., Brannigan B.W., Akhavanfard S., Coffman E.J., et al. Aberrant overexpression of satellite repeats in pancreatic and other epithelial cancers. Science 2011, 331:593-596.
21. Yin Z., Guan D., Fan Q., Su J., Zheng W., Ma W., et al. lncRNA expression signatures in response to enterovirus 71 infection. Biochem Biophys Res Commun 2013, 430:629-633.
22. Peng X., Gralinski L., Armour C.D., Ferris M.T., Thomas M.J., Proll S., et al. Unique signatures of long noncoding RNA expression in response to virus infection and altered innate immune signaling. MBio 2010, 1(5). pii: e00206-10.
23. Liu Y., Pan S., Liu L., Zhai X., Liu J., Wen J., et al. A genetic variant in long non-coding RNA HULC contributes to risk of HBV-related hepatocellular carcinoma in a Chinese population. PLoS One 2012, 7:e35145.
24. Van Roosbroeck K., Pollet J., Calin G.A. miRNAs and long noncoding RNAs as biomarkers in human diseases. Expert Rev Mol Diagn 2013, 13:183-204.
25. Mamura K., Imamachi N., Akizuki G., Kumakura M., Kawaguchi A., Nagata K., et al. Long noncoding RNA NEAT1-dependent SFPQ relocation from promoter region to paraspeckle mediates IL8 expression upon immune stimuli. Mol Cell 2014, 53:393-406.
26. Zhang Q., Chen C.Y., Yedavalli V.S., Jeang K.T. NEAT1 long noncoding RNA and paraspeckle bodies modulate HIV-1 posttranscriptional expression. MBio 2013, 4. e00596-12.
27. Dawany N., Showe L.C., Kossenkov A.V., Chang C., Ive P., Conradie F., et al. Identification of a 251 gene expression signature that can accurately detect M. tuberculosis in patients with and without HIV Co-infection. PLoS One 2014, 9:e89925.
28. Bloom C.I., Graham C.M., Berry M.P., Rozakeas F., Redford P.S., Wang Y., et al. Transcriptional blood signatures distinguish pulmonary tuberculosis, pulmonary sarcoidosis, pneumonias and lung cancers. PLoS One 2013, 8:e70630.
29. Berry M.P., Graham C.M., McNab F.W., Xu Z., Bloch S.A., Oni T., et al. An interferon-inducible neutrophil-driven blood transcriptional signature in human tuberculosis. Nature 2010, 466:973-977.
30. Stern J.N., Keskin D.B., Romero V., Zuniga J., Encinales L., Li C., et al. Molecular signatures distinguishing active from latent tuberculosis in peripheral blood mononuclear cells, after invitro antigenic stimulation with purified protein derivative of tuberculin (PPD) or candida: a preliminary report. Immunol Res 2009, 45:1-12.
31. (+) T cells from individuals with latent tuberculosis versus active tuberculosis. J Cell Mol Med 2014, 18:503-513.
32. Guttman M., Amit I., Garber M., French C., Lin M.F., Feldser D., et al. Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals. Nature 2009, 458:223-227.
33. Hung T., Wang Y., Lin M.F., Koegel A.K., Kotake Y., Grant G.D., et al. Extensive and coordinated transcription of noncoding RNAs within cell-cycle promoters. Nat Genet 2011, 43:621-629.
34. Green J.A., Rand L., Moores R., Dholakia S., Pezas T., Elkington P.T., et al. In an invitro model of human tuberculosis, monocyte-microglial networks regulate matrix metalloproteinase-1 and-3 gene expression and secretion via a p38 mitogen activated protein kinase-dependent pathway. J Neuroinflammation 2013, 10:107.
35. Cho J.E., Park S., Lee H., Cho S.N., Kim Y.S. Mycobacterium tuberculosis-induced expression of granulocyte-macrophage colony stimulating factor is mediated by PI3-K/MEK1/p38 MAPK signaling pathway. BMB Rep 2013, 46:213-218.
36. Tang S., Cui H., Yao L., Hao X., Shen Y., Fan L., et al. Increased cytokines response in patients with tuberculosis complicated with chronic obstructive pulmonary disease. PLoS One 2013, 8:e62385.
37. Kim J.S., Kim W.S., Choi H.G., Jang B., Lee K., Park J.H., et al. Mycobacterium tuberculosis RpfB drives Th1-type T cell immunity via a TLR4-dependent activation of dendritic cells. J Leukoc Biol 2013, 94:733-749.
38. + T cells enhances effector functions and protective responses to Mycobacterium tuberculosis. Eur J Immunol 2014, 44(5):1410-1421.