A parameter to quantify the degree of genetic mixing among individuals in hybrid populations

Heredity

Volumn 114, Issue 3, 2015, Pages 249-254

  Kalinowski, S T ^a   Powell, J H ^a  

^a MONTANA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER; GENETIC VARIATION; HYBRID; HYBRIDIZATION; QUANTITATIVE ANALYSIS; VARIANCE ANALYSIS;

BIOLOGICAL MODEL; COMPUTER SIMULATION; HYBRIDIZATION; POPULATION GENETICS;

COMPUTER SIMULATION; GENETICS, POPULATION; HYBRIDIZATION, GENETIC; MODELS, GENETIC;

EID: 84922608804     PISSN: 0018067X     EISSN: 13652540     Source Type: Journal    
DOI: 10.1038/hdy.2014.93     Document Type: Article

References (38)

1. Allendorf FW, Leary RB, Spruell P, Wenburg JK (2001). The problems with hybrids: setting Conservation guidelines. Trends Ecol Evol 16: 613-622
2. Allendorf FW, Leary RF (1988). Conservation and distribution of genetic variation in a poltypic species, the cutthroat trout. Conserv Biol 2: 170-184
3. Anderson EC (2001). Monte Carlo Methods for Inference in Population Genetic Models. University of Washington: Seattle, WA, USA, 195 p.
4. Anderson EC, Thompson EA (2002). A model-based method for identifying species hybrids using multilocus genetic data. Genetics 160: 1217-1229
5. Barton NH, Gale KS (1993). Genetic analysis of hybrid zones. In: Harrison RG (ed). Hybrid Zones and the Evolutionary Process. Oxford University Press, New York, NY, USA, pp 13-45
6. Barton NH, Hewitt M (1985). Analysis of hybrid zones. Annual Review of Ecology and Systematic 16: 113-148
7. Cheng C-Y, Reich D, Coresh J, Boerwinkle E, Patterson N, Li M et al. (2010). Admixture mapping of obesity-related traits in African Americans: the Atherosclerosis Risk in Communities (ARIC) Study. Obesity 18: 563-572
8. Danzmann RG, Cairnet M, Davidson WS, Ferguson MM, Gharbi K, Guyomard R et al. (2005). A comparative analysis of the rainbow trout genome with 2 other species of fish (Arctic charr and Atlantic salmon) within the tetraploid derivative Salmonidae family (subfamily: Salmoninae). Genome 48: 1037-1051
9. Everitt BS, Skrondal A (2010). The Cambridge Dictionary of Statistics. Cambridge University Press, Cambridge, UK
10. Finger AJ, Anderson EC, Stephens MR, May BP (2011). Application of a method or estimating effective population size and admixture using diagnostic single nucleotide polymorphisms (SNPs): implications for conservation of threatened Paiute cutthroat trout (Oncorhynchus clarkii seleniris) in Silver King Creek. Can J Fish Aquat Sci 68: 1369-1386
11. Harrison RG, Bogdanowicz SM (1997). Patterns of variation and linkage disequilibrium in a field cricket hybrid zone. Evolution 493-505
12. Hedrick PW (2011). Genetics of Populations. Jones and Bartlett Publishers: Sudbury, MA, USA.
13. Hedrick PW (2009). Conservation genetics and North American bison (Bison bison). J Hered 100: 411-420
14. Hey J (2010). Isolation with migration models for more than two populations. Mol Biol Evol 27: 905-920
15. Hogg JT, Forbes SH, Steele BM, Luikart G (2006). Genetic rescue of an insular population of large mammals. Proc Biol Sci 273: 1491-1499
16. Johnson WE, Onorato DP, Roelke ME, Land ED, Cunningham M, Belden RC et al. (2010). The genetic restoration of the Florida panther. Science 329: 1641-1645
17. Lewontin RC (1964). The interaction of selection and linkage. I. General considerations, heterotic models. Genetics 49: 49-67
18. Mao X, Bigham AW, Mei R, Gutierrez G, Weiss KM, Brutsaert TD et al. (2007). A genomewide admixture mapping panel for hispanic/latino populations. Am J Hum Genet 80: 1171-1178
19. Muhlfeld CC, Kalinowski ST, McMahon TE, Painter S, Leary RF, Taper ML et al. (2009). Hybridization reduces fitness of cutthroat trout in the wild. Biol Lett 5: 328-331
20. Pertoldi C, Tokarska M, Wójcik J.M, Kawako A, Randi E, Kristensen TN et al. (2010). Phylogenetic relationships among the European and American bison and seven cattle breeds reconstructed using the BovineSNP50 Illumina Genotyping BeadChip. Acta Theriol 55: 97-108
21. Piñeyro-Nelson A, Van Herwaarden J, Perales HR, Serratos-Hernandez JA, Rangel A, Hufford MB et al. (2009). Transgenes in Mexican maize: molecular evidence and methodological considerations for GMO detection in landrace populations. Mol Ecol 18: 750-761
22. Pritchard JK, Stephens M, Donnelly P (2000). Inference of population structure using multilocus genotype data. Genetics 155: 945-959
23. Rhymer JM, Williams MJ, Braun MJ (1994). Mitochondrial analysis of gene flow between New Zealand mallards (Anas platyrhynchos) and grey ducks (A. supreciliosa). Auk 111: 970-978
24. Rhymer JM, Simberloff D (1996). Extinction by hybridization and introgression. Annu Rev Ecol Syst 27: 83-109
25. Rousset F (2008). Genepop'007: A complete reimplementation of the genepop software for Windows and Linux. Mol Ecol Resour 8: 103-106
26. R Development Core Team (2008). R: A language and environment for statistical computing. R Foundation for Statistical Computing: Vienna, Austria. ISBN. 3-900051-07-0, URL http://www.R-project.org
27. Steeves TE, Maloney RF, Hale ML, Tylianakis JM, Gemmel NJ (2010). Genetic analyses reveal hybridization but no hybrid swarm in one of the world's rarest birds. Mol Ecol 19: 5090-5100
28. Tang H, Coram M, Wang P, Zhu X, Risch N (2006). Reconstructing genetic ancestry blocks in admixed individuals. Am J Hum Genet 79: 1-12
29. Vander Wal E, Garant D, Festa-Bianchet M, Pelletier F (2012). Evolutionary rescue in vertebrates: evidence, applications and uncertainty. Phil Trans R Soc B 368: 20120090
30. Vernesi C, Crestanello B, Pecchioli E, Tartari D., Caramelli D, Hauffe H et al. (2003). The genetic impact of demographic decline and reintroduction in the wild boar (Sus scrofa): A microsatellite analysis. Mol Ecol 12: 585-595
31. vonHoldt BM, Pollinger JP, Earl DA, Knowles JC, Boyko AR, Boyko AR et al. 2011). A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids. Genome Resour 21 1294-1305
32. Watrud LS, Lee EH, Fairbrother A, Burdick C, Reichman JR, Bollman M et al. (2004). Evidence for landscape-level, pollen-mediated gene flow from genetically modified creeping bentgrass with CP4 EPSPS as a marker. Proc Natl Acad Sci USA 40: 14533-14538
33. Weir BS (2010). Genetic Data Analysis III. Sinauer Associates, Inc: Sunderland, MA, USA
34. Weir BS, Cockerham CC (1984). Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370
35. Weir BS, Hill WG (2002). Estimating F-statistics. Annu Rev Genet 36: 721-750
36. Winkler CA, Nelson GW, Smith MW (2010). Admixture mapping comes of age. Annu Rev Genomics Hum Genet 11: 65-89
37. Wright S (1951). The genetical structure of populations. Ann Eugen 15: 323-353
38. Zapiola ML, Mallory-Smith CA (2012). Crossing the divide: gene flow produces intergeneric hybrid in feral transgenic creeping bentgrass population. Mol Ecol 21: 4672-4680