Development and application of efficient pathway enumeration algorithms for metabolic engineering applications

Computer Methods and Programs in Biomedicine

Volumn 118, Issue 2, 2015, Pages 134-146

  Liu, F ^a   Vilaca P ^a,b   Rocha, I ^a   Rocha, M ^a  

^a UNIVERSITY OF MINHO   (Portugal)

^b SpinPark   (Portugal)

Author keywords

Constraint based modeling; Hypergraphs; Metabolic engineering; Optimal pathway design; Pathway enumeration; Synthetic biology

Indexed keywords

ALGORITHMS; CELL ENGINEERING; ESCHERICHIA COLI; GRAPH THEORY; GRAPHIC METHODS; KNOWLEDGE BASED SYSTEMS; METABOLISM;

CONSTRAINT-BASED MODELING; DEVELOPMENT AND APPLICATIONS; ENGINEERING APPLICATIONS; GRAPH-BASED REPRESENTATIONS; HYPER GRAPH; MICROBIAL CELL FACTORIES; PATHWAY ENUMERATION; SYNTHETIC BIOLOGY;

METABOLIC ENGINEERING;

2 OXOISOVALERIC ACID; BUTANOL; CURCUMIN; MALONYL COENZYME A; VANILLIN; BENZALDEHYDE DERIVATIVE;

ALGORITHM; AOLUTION STRUCTURE GENERATION ALGORITHM; ARTICLE; COMPUTER PROGRAM; ESCHERICHIA COLI; FIND PATH ALGORITHM; METABOLIC ENGINEERING; SACCHAROMYCES CEREVISIAE; METABOLISM; THEORETICAL MODEL;

1-BUTANOL; ALGORITHMS; BENZALDEHYDES; CURCUMIN; ESCHERICHIA COLI; METABOLIC ENGINEERING; MODELS, THEORETICAL; SACCHAROMYCES CEREVISIAE;

EID: 84922449472     PISSN: 01692607     EISSN: 18727565     Source Type: Journal    
DOI: 10.1016/j.cmpb.2014.11.010     Document Type: Article

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