Two novel reassortants of avian influenza A (H5N6) virus in China

Journal of General Virology

Volumn 96, Issue 5, 2015, Pages 975-981

  Bi, Yuhai ^a,b   Mei, Kun ^c,d   Shi, Weifeng ^e   Liu, Di ^a,b   Yu, Xiaolan ^d   Gao, Zhimin ^c   Zhao, Lihua ^c   Gao, George F ^a,b,c,f,g   Chen, Jianjun ^b,c   Chen, Quanjiao ^b,c  

^a INSTITUTE OF MICROBIOLOGY   (China)

^b INSTITUTE OF GEOLOGY AND GEOPHYSICS   (China)

^c WUHAN INSTITUTE OF VIROLOGY   (China)

^d HUBEI UNIVERSITY   (China)

^e SHANDONG PROVINCIAL HOSPITAL AFFILIATED TO SHANDONG FIRST MEDICAL UNIVERSITY   (China)

^f CHINESE CENTER FOR DISEASE CONTROL AND PREVENTION   (China)

^g ZHEJIANG UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; AVIAN INFLUENZA; CHINA; GENETIC ANALYSIS; GENETIC REASSORTMENT; HUMAN; INFLUENZA A; INFLUENZA A (H5N1); INFLUENZA A (H5N6); INFLUENZA VIRUS A H5N1; INFLUENZA VIRUS A H5N2; PHYLOGENY; PRIORITY JOURNAL; AMINO ACID SUBSTITUTION; ANIMAL; CLUSTER ANALYSIS; DNA SEQUENCE; GENE DELETION; GENETICS; INFLUENZA A VIRUS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; POULTRY; SEQUENCE HOMOLOGY; VIROLOGY; VIRULENCE;

AVES; AVIAN INFLUENZA VIRUS; INFLUENZA A VIRUS; MAMMALIA;

INFLUENZA VIRUS HEMAGGLUTININ; NA PROTEIN, INFLUENZA A VIRUS; SIALIDASE; VIRUS PROTEIN; VIRUS RNA;

AMINO ACID SUBSTITUTION; ANIMALS; CHINA; CLUSTER ANALYSIS; HEMAGGLUTININ GLYCOPROTEINS, INFLUENZA VIRUS; INFLUENZA A VIRUS; INFLUENZA IN BIRDS; MOLECULAR SEQUENCE DATA; NEURAMINIDASE; PHYLOGENY; POULTRY; REASSORTANT VIRUSES; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE DELETION; SEQUENCE HOMOLOGY; VIRAL PROTEINS; VIRULENCE;

EID: 84922444646     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.000056     Document Type: Article

References (31)

1. Cauldwell, A. V., Long, J.S., Moncorgé, O. & Barclay, W. S. (2014). Viral determinants of influenza A virus host range. J Gen Virol 95, 1193–1210.
2. Chan, P. K. (2002). Outbreak of avian influenza A(H5N1) virus infection in Hong Kong in 1997. Clin Infect Dis 34 (Suppl 2), S58–S64.
3. Chen, H., Yuan, H., Gao, R., Zhang, J., Wang, D., Xiong, Y., Fan, G., Yang, F., Li, X. & other authors (2014). Clinical and epidemiological characteristics of a fatal case of avian influenza A H10N8 virus infection: a descriptive study. Lancet 383, 714–721.
4. China CDC (2014). Avian influenza A(H5N6) virus was detected in a respiratory tract sample from a patient who died of severe pneumonia in Sichuan. http://www.chinacdc.cn/mtdx/crbxx/201405/t20140507_96416.htm (in Chinese).
5. Cowling, B. J., Jin, L., Lau, E. H., Liao, Q., Wu, P., Jiang, H., Tsang, T. K., Zheng, J., Fang, V. J. & other authors (2013). Comparative epidemiology of human infections with avian influenza A H7N9 and H5N1 viruses in China: a population-based study of laboratoryconfirmed cases. Lancet 382, 129–137.
6. Gao, G. F. (2014). Influenza and the live poultry trade. Science 344, 235.
7. Gao, Y., Zhang, Y., Shinya, K., Deng, G., Jiang, Y., Li, Z., Guan, Y., Tian, G., Li, Y. & other authors (2009). Identification of amino acids in HA and PB2 critical for the transmission of H5N1 avian influenza viruses in a mammalian host. PLoS Pathog 5, e1000709.
8. Gu, M., Liu, W., Cao, Y., Peng, D., Wang, X., Wan, H., Zhao, G., Xu, Q., Zhang, W. & other authors (2011). Novel reassortant highly pathogenic avian influenza (H5N5) viruses in domestic ducks, China. Emerg Infect Dis 17, 1060–1063.
9. Gu, M., Zhao, G., Zhao, K., Zhong, L., Huang, J., Wan, H., Wang, X., Liu, W., Liu, H. & other authors (2013). Novel variants of clade 2.3.4 highly pathogenic avian influenza A(H5N1) viruses, China. Emerg Infect Dis 19, 2021–2024.
10. Hoffmann, E., Stech, J., Guan, Y., Webster, R. G. & Perez, D. R. (2001). Universal primer set for the full-length amplification of all influenza A viruses. Arch Virol 146, 2275–2289.
11. Li, O. T., Barr, I., Leung, C. Y., Chen, H., Guan, Y., Peiris, J. S. & Poon, L. L. (2007). Reliable universal RT-PCR assays for studying influenza polymerase subunit gene sequences from all 16 haemagglutinin subtypes. J Virol Methods 142, 218–222.
12. Liu, J., Xiao, H., Lei, F., Zhu, Q., Qin, K., Zhang, X. W., Zhang, X. L., Zhao, D., Wang, G. & other authors (2005). Highly pathogenic H5N1 influenza virus infection in migratory birds. Science 309, 1206.
13. Matsuoka, Y., Swayne, D. E., Thomas, C., Rameix-Welti, M.-A., Naffakh, N., Warnes, C., Altholtz, M., Donis, R. & Subbarao, K. (2009). Neuraminidase stalk length and additional glycosylation of the hemagglutinin influence the virulence of influenza H5N1 viruses for mice. J Virol 83, 4704–4708.
14. McAuley, J. L., Chipuk, J. E., Boyd, K. L., Van De Velde, N., Green, D. R. & McCullers, J. A. (2010). PB1-F2 proteins from H5N1 and 20 century pandemic influenza viruses cause immunopathology. PLoS Pathog 6, e1001014.
15. Neumann, G., Green, M. A. & Macken, C. A. (2010). Evolution of highly pathogenic avian H5N1 influenza viruses and the emergence of dominant variants. J Gen Virol 91, 1984–1995.
16. OIE (2014). Update on highly pathogenic avian influenza in animals (type H5 and H7). http://www.oie.int/en/animal-health-in-the-world/update-on-avian-influenza/2014/
17. Sakoda, Y., Ito, H., Uchida, Y., Okamatsu, M., Yamamoto, N., Soda, K., Nomura, N., Kuribayashi, S., Shichinohe, S. & other authors (2012). Reintroduction of H5N1 highly pathogenic avian influenza virus by migratory water birds, causing poultry outbreaks in the 2010–2011 winter season in Japan. J Gen Virol 93, 541–550.
18. Wang, G., Zhan, D., Li, L., Lei, F., Liu, B., Liu, D., Xiao, H., Feng, Y., Li, J. & other authors (2008). H5N1 avian influenza re-emergence of Lake Qinghai: phylogenetic and antigenic analyses of the newly isolated viruses and roles of migratory birds in virus circulation. J Gen Virol 89, 697–702.
19. WHO (2011). Manual for the laboratory diagnosis and virological surveillance of influenza. http://whqlibdoc.who.int/publications/2011/9789241548090_eng.pdf
20. WHO (2014a). Cumulative number of confirmed human cases of avian influenza A (H5N1) reported to WHO, 2003–2014. http://www.who.int/influenza/human_animal_interface/H5N1_cumulative_table_archives/en/
21. WHO (2014b). Influenza at the human–animal interface.http://www.who.int/influenza/human_animal_interface/about/en/
22. WHO/OIE/FAO (2012). Continued evolution of highly pathogenic avian influenza A (H5N1): updated nomenclature. Influenza Other Respi Viruses 6, 1–5.
23. Wong, F. Y. K., Phommachanh, P., Kalpravidh, W., Chanthavisouk, C., Gilbert, J., Bingham, J., Davies, K. R., Cooke, J., Eagles, D. & other authors (2015). Reassortant highly pathogenic influenza A(H5N6) virus in Laos. Emerg Infect Dis doi:10.3201/eid2103.141488 [Epub ahead of print].
24. Wu, H., Peng, X., Xu, L., Jin, C., Cheng, L., Lu, X., Xie, T., Yao, H. & Wu, N. (2014). Novel reassortant influenza A(H5N8) viruses in domestic ducks, eastern China. Emerg Infect Dis 20, 1315–1318.
25. Xu, X., Subbarao, K., Cox, N. J. & Guo, Y. (1999). Genetic characterization of the pathogenic influenza A/Goose/Guangdong/1/ 96 (H5N1) virus: similarity of its hemagglutinin gene to those of H5N1 viruses from the 1997 outbreaks in Hong Kong. Virology 261, 15–19.
26. Zamarin, D., Ortigoza, M. B. & Palese, P. (2006). Influenza A virus PB1-F2 protein contributes to viral pathogenesis in mice. J Virol 80, 7976–7983.
27. Zhang, W., Shi, Y., Lu, X., Shu, Y., Qi, J. & Gao, G. F. (2013). An airborne transmissible avian influenza H5 hemagglutinin seen at the atomic level. Science 340, 1463–1467.
28. Zhang, T., Bi, Y., Tian, H., Li, X., Liu, D., Wu, Y., Jin, T., Wang, Y., Chen, Q. & other authors (2014). Human infection with influenza virus A(H10N8) from live poultry markets, China, 2014. Emerg Infect Dis 20, 2076–2079.
29. Zhao, Z.-M., Shortridge, K. F., Garcia, M., Guan, Y. & Wan, X.-F. (2008). Genotypic diversity of H5N1 highly pathogenic avian influenza viruses. J Gen Virol 89, 2182–2193.
30. Zhao, G., Gu, X., Lu, X., Pan, J., Duan, Z., Zhao, K., Gu, M., Liu, Q., He, L. & other authors (2012). Novel reassortant highly pathogenic H5N2 avian influenza viruses in poultry in China. PLoS One 7, e46183.
31. Zhou, H., Yu, Z., Hu, Y., Tu, J., Zou, W., Peng, Y., Zhu, J., Li, Y., Zhang, A. & other authors (2009). The special neuraminidase stalk-motif responsible for increased virulence and pathogenesis of H5N1 influenza A virus. PLoS One 4, e6277.