PuFFIN - a parameter-free method to build nucleosome maps from paired-end reads

BMC Bioinformatics

Volumn 15, Issue 9, 2014, Pages

  Polishko, Anton ^a   Bunnik, Evelien M ^b   Le Roch, Karine G ^b   Lonardi, Stefano ^a  

^a Department of Computer Science and Engineering ^*  (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

ChIP Seq; Genome wide nucleosome maps; MNase Seq; Nucleosome positioning; Paired end reads

Indexed keywords

GENES;

CHIP-SEQ; DIFFERENT RESOLUTIONS; MNASE-SEQ; NUCLEOSOMES; OVERLAPPING CONSTRAINTS; PAIRED-END READS; PARAMETER-FREE METHODS; USER-DEFINED PARAMETERS;

PARAMETER ESTIMATION;

CONSENSUS; CONTROLLED STUDY; EXPERIMENTAL MODEL; FILTRATION; GENOME; LANDSCAPE; NUCLEOSOME; ALGORITHM; GENETICS; GENOMICS; PLASMODIUM FALCIPARUM; PROCEDURES; SACCHAROMYCES CEREVISIAE;

NUCLEOSOME;

ALGORITHMS; GENOMICS; NUCLEOSOMES; PLASMODIUM FALCIPARUM; SACCHAROMYCES CEREVISIAE;

EID: 84921759025     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-15-S9-S11     Document Type: Article

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