-
1
-
-
79954511288
-
Chemoinformatics as a Theoretical Chemistry Discipline
-
Varnek, A.; Baskin, I. I. Chemoinformatics as a Theoretical Chemistry Discipline Mol. Inform. 2011, 30, 20-32
-
(2011)
Mol. Inform.
, vol.30
, pp. 20-32
-
-
Varnek, A.1
Baskin, I.I.2
-
2
-
-
84903752225
-
Data-driven medicinal chemistry in the era of big data
-
Lusher, S. J.; McGuire, R.; van Schaik, R. C.; Nicholson, C. D.; de Vlieg, J. Data-driven medicinal chemistry in the era of big data Drug Discovery Today 2014, 19, 859-868
-
(2014)
Drug Discovery Today
, vol.19
, pp. 859-868
-
-
Lusher, S.J.1
McGuire, R.2
Van Schaik, R.C.3
Nicholson, C.D.4
De Vlieg, J.5
-
3
-
-
84899463536
-
The Role of Big Data and Advanced Analytics in Drug Discovery, Development, and Commercialization
-
Szlezák, N.; Evers, M.; Wang, J.; Pérez, L. The Role of Big Data and Advanced Analytics in Drug Discovery, Development, and Commercialization Clin. Pharmacol. Ther. 2014, 95, 492-495
-
(2014)
Clin. Pharmacol. Ther.
, vol.95
, pp. 492-495
-
-
Szlezák, N.1
Evers, M.2
Wang, J.3
Pérez, L.4
-
4
-
-
33846871027
-
The Scaffold Tree - Visualization of the Scaffold Universe by Hierarchical Scaffold Classification
-
Schuffenhauer, A.; Ertl, P.; Roggo, S.; Wetzel, S.; Koch, M. A.; Waldmann, H. The Scaffold Tree-Visualization of the Scaffold Universe by Hierarchical Scaffold Classification J. Chem. Inf. Model. 2007, 47, 47-58
-
(2007)
J. Chem. Inf. Model.
, vol.47
, pp. 47-58
-
-
Schuffenhauer, A.1
Ertl, P.2
Roggo, S.3
Wetzel, S.4
Koch, M.A.5
Waldmann, H.6
-
5
-
-
79960743954
-
Mining for Bioactive Scaffolds with Scaffold Networks: Improved Compound Set Enrichment from Primary Screening Data
-
Varin, T.; Schuffenhauer, A.; Ertl, P.; Renner, S. Mining for Bioactive Scaffolds with Scaffold Networks: Improved Compound Set Enrichment from Primary Screening Data J. Chem. Inf. Model. 2011, 51, 1528-1538
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 1528-1538
-
-
Varin, T.1
Schuffenhauer, A.2
Ertl, P.3
Renner, S.4
-
6
-
-
84904725295
-
Chemical space networks: A powerful new paradigm for the description of chemical space
-
Maggiora, G. M.; Bajorath, J. Chemical space networks: a powerful new paradigm for the description of chemical space J. Comput. Aided Mol. Des. 2014, 28, 795-802
-
(2014)
J. Comput. Aided Mol. Des.
, vol.28
, pp. 795-802
-
-
Maggiora, G.M.1
Bajorath, J.2
-
7
-
-
84891012448
-
Dimensionality Reduction Techniques for Pharmaceutical Data Mining
-
In Balakin, K. V. John Wiley & Sons, Inc
-
Pletnev, I. V.; Ivanenkov, Y. A.; Tarasov, A. V. Dimensionality Reduction Techniques for Pharmaceutical Data Mining. In Pharmaceutical Data Mining Balakin, K. V., Ed.; John Wiley & Sons, Inc., 2009; pp 423-455.
-
(2009)
Pharmaceutical Data Mining
, pp. 423-455
-
-
Pletnev, I.V.1
Ivanenkov, Y.A.2
Tarasov, A.V.3
-
8
-
-
84887006810
-
A Nonlinear Mapping for Data Structure Analysis
-
Sammon, J. W. A Nonlinear Mapping for Data Structure Analysis IEEE Trans. Comput. 1969, 18, 401-409
-
(1969)
IEEE Trans. Comput.
, vol.18
, pp. 401-409
-
-
Sammon, J.W.1
-
9
-
-
0041654220
-
Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis
-
Kruskal, J. B. Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis Psychometrika 1964, 29, 1-27
-
(1964)
Psychometrika
, vol.29
, pp. 1-27
-
-
Kruskal, J.B.1
-
10
-
-
84921636264
-
Linear scaling mapping of chemical space
-
San Francisco, CA, United States, March 21
-
Delaney, J. Linear scaling mapping of chemical space. 239th ACS National Meeting, San Francisco, CA, United States, March 21, 2010.
-
(2010)
239th ACS National Meeting
-
-
Delaney, J.1
-
11
-
-
84907882046
-
Design of a General-Purpose European Compound Screening Library for EU-OPENSCREEN
-
Horvath, D.; Lisurek, M.; Rupp, B.; Kühne, R.; Specker, E.; von Kries, J.; Rognan, D.; Andersson, C. D.; Almqvist, F.; Elofsson, M.; Enqvist, P.-A.; Gustavsson, A.-L.; Remez, N.; Mestres, J.; Marcou, G.; Varnek, A.; Hibert, M.; Quintana, J.; Frank, R. Design of a General-Purpose European Compound Screening Library for EU-OPENSCREEN ChemMedChem. 2014, n/a-n/a
-
(2014)
ChemMedChem.
-
-
Horvath, D.1
Lisurek, M.2
Rupp, B.3
Kühne, R.4
Specker, E.5
Von Kries, J.6
Rognan, D.7
Andersson, C.D.8
Almqvist, F.9
Elofsson, M.10
Enqvist, P.-A.11
Gustavsson, A.-L.12
Remez, N.13
Mestres, J.14
Marcou, G.15
Varnek, A.16
Hibert, M.17
Quintana, J.18
Frank, R.19
-
12
-
-
84866235733
-
Using self-organizing maps to accelerate similarity search
-
Bonachera, F.; Marcou, G.; Kireeva, N.; Varnek, A.; Horvath, D. Using self-organizing maps to accelerate similarity search Bioorg. Med. Chem. 2012, 20, 5396-5409
-
(2012)
Bioorg. Med. Chem.
, vol.20
, pp. 5396-5409
-
-
Bonachera, F.1
Marcou, G.2
Kireeva, N.3
Varnek, A.4
Horvath, D.5
-
13
-
-
66149148225
-
Chemoinformatic Analysis of Combinatorial Libraries, Drugs, Natural Products, and Molecular Libraries Small Molecule Repository
-
Singh, N.; Guha, R.; Giulianotti, M. A.; Pinilla, C.; Houghten, R. A.; Medina-Franco, J. L. Chemoinformatic Analysis of Combinatorial Libraries, Drugs, Natural Products, and Molecular Libraries Small Molecule Repository J. Chem. Inf. Model. 2009, 49, 1010-1024
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 1010-1024
-
-
Singh, N.1
Guha, R.2
Giulianotti, M.A.3
Pinilla, C.4
Houghten, R.A.5
Medina-Franco, J.L.6
-
14
-
-
80051986700
-
Visual Characterization and Diversity Quantification of Chemical Libraries: 1. Creation of Delimited Reference Chemical Subspaces
-
Le Guilloux, V.; Colliandre, L.; Bourg, S.; Guénegou, G.; Dubois-Chevalier, J.; Morin-Allory, L. Visual Characterization and Diversity Quantification of Chemical Libraries: 1. Creation of Delimited Reference Chemical Subspaces J. Chem. Inf. Model. 2011, 51, 1762-1774
-
(2011)
J. Chem. Inf. Model.
, vol.51
, pp. 1762-1774
-
-
Le Guilloux, V.1
Colliandre, L.2
Bourg, S.3
Guénegou, G.4
Dubois-Chevalier, J.5
Morin-Allory, L.6
-
15
-
-
84902118826
-
Expanding the fragrance chemical space for virtual screening
-
Ruddigkeit, L.; Awale, M.; Reymond, J.-L. Expanding the fragrance chemical space for virtual screening J. Cheminformatics 2014, 6, 27
-
(2014)
J. Cheminformatics
, vol.6
, pp. 27
-
-
Ruddigkeit, L.1
Awale, M.2
Reymond, J.-L.3
-
16
-
-
84879854889
-
Representation Learning: A Review and New Perspectives
-
Bengio, Y.; Courville, A.; Vincent, P. Representation Learning: A Review and New Perspectives IEEE Trans. Pattern Anal. Mach. Intell. 2013, 35, 1798-1828
-
(2013)
IEEE Trans. Pattern Anal. Mach. Intell.
, vol.35
, pp. 1798-1828
-
-
Bengio, Y.1
Courville, A.2
Vincent, P.3
-
17
-
-
84859890850
-
Generative Topographic Mapping (GTM): Universal Tool for Data Visualization, Structure-Activity Modeling and Dataset Comparison
-
Kireeva, N.; Baskin, I. I.; Gaspar, H. A.; Horvath, D.; Marcou, G.; Varnek, A. Generative Topographic Mapping (GTM): Universal Tool for Data Visualization, Structure-Activity Modeling and Dataset Comparison Mol. Inform. 2012, 31, 301-312
-
(2012)
Mol. Inform.
, vol.31
, pp. 301-312
-
-
Kireeva, N.1
Baskin, I.I.2
Gaspar, H.A.3
Horvath, D.4
Marcou, G.5
Varnek, A.6
-
20
-
-
0026436795
-
Self-organizing maps: Ordering, convergence properties and energy functions
-
Erwin, E.; Obermayer, K.; Schulten, K. Self-organizing maps: ordering, convergence properties and energy functions Biol. Cybern. 1992, 67, 47-55
-
(1992)
Biol. Cybern.
, vol.67
, pp. 47-55
-
-
Erwin, E.1
Obermayer, K.2
Schulten, K.3
-
21
-
-
0347963789
-
GTM: The Generative Topographic Mapping
-
Bishop, C. M.; Svensén, M.; Williams, C. K. I. GTM: The Generative Topographic Mapping Neural Comput. 1998, 10, 215-234
-
(1998)
Neural Comput.
, vol.10
, pp. 215-234
-
-
Bishop, C.M.1
Svensén, M.2
Williams, C.K.I.3
-
22
-
-
84896519769
-
Generative Topographic Mapping-Based Classification Models and Their Applicability Domain: Application to the Biopharmaceutics Drug Disposition Classification System (BDDCS)
-
Gaspar, H. A.; Marcou, G.; Horvath, D.; Arault, A.; Lozano, S.; Vayer, P.; Varnek, A. Generative Topographic Mapping-Based Classification Models and Their Applicability Domain: Application to the Biopharmaceutics Drug Disposition Classification System (BDDCS) J. Chem. Inf. Model. 2013, 53, 3318-3325
-
(2013)
J. Chem. Inf. Model.
, vol.53
, pp. 3318-3325
-
-
Gaspar, H.A.1
Marcou, G.2
Horvath, D.3
Arault, A.4
Lozano, S.5
Vayer, P.6
Varnek, A.7
-
23
-
-
84907398358
-
Simple Ligand-Receptor Interaction Descriptor (SILIRID) for alignment-free binding site comparison
-
Chupakhin, V.; Marcou, G.; Gaspar, H.; Varnek, A. Simple Ligand-Receptor Interaction Descriptor (SILIRID) for alignment-free binding site comparison Comput. Struct. Biotechnol. J. 2014, 10, 33-37
-
(2014)
Comput. Struct. Biotechnol. J.
, vol.10
, pp. 33-37
-
-
Chupakhin, V.1
Marcou, G.2
Gaspar, H.3
Varnek, A.4
-
24
-
-
84868552976
-
Toward Navigating Chemical Space of Ionic Liquids: Prediction of Melting Points Using Generative Topographic Maps
-
Kireeva, N.; Kuznetsov, S. L.; Tsivadze, A. Y. Toward Navigating Chemical Space of Ionic Liquids: Prediction of Melting Points Using Generative Topographic Maps Ind. Eng. Chem. Res. 2012, 51, 14337-14343
-
(2012)
Ind. Eng. Chem. Res.
, vol.51
, pp. 14337-14343
-
-
Kireeva, N.1
Kuznetsov, S.L.2
Tsivadze, A.Y.3
-
25
-
-
0344110441
-
Developments of the generative topographic mapping
-
Bishop, C. M.; Svensén, M.; Williams, C. K. I. Developments of the generative topographic mapping Neurocomputing 1998, 21, 203-224
-
(1998)
Neurocomputing
, vol.21
, pp. 203-224
-
-
Bishop, C.M.1
Svensén, M.2
Williams, C.K.I.3
-
26
-
-
84860434244
-
Structural enrichment of HTS compounds from available commercial libraries
-
Petrova, T.; Chuprina, A.; Parkesh, R.; Pushechnikov, A. Structural enrichment of HTS compounds from available commercial libraries MedChemComm 2012, 3, 571
-
(2012)
MedChemComm
, vol.3
, pp. 571
-
-
Petrova, T.1
Chuprina, A.2
Parkesh, R.3
Pushechnikov, A.4
-
28
-
-
0345832327
-
On the choice of the number of blocks with the incremental em algorithm for the fitting of normal mixtures
-
Ng, S. K.; McLachlan, G. J. On the choice of the number of blocks with the incremental EM algorithm for the fitting of normal mixtures Stat. Comput. 2003, 13, 45-55
-
(2003)
Stat. Comput.
, vol.13
, pp. 45-55
-
-
Ng, S.K.1
McLachlan, G.J.2
-
29
-
-
3342878970
-
Multivariable geostatistics in S: The gstat package
-
Pebesma, E. J. Multivariable geostatistics in S: the gstat package Comput. Geosci. 2004, 30, 683-691
-
(2004)
Comput. Geosci.
, vol.30
, pp. 683-691
-
-
Pebesma, E.J.1
-
30
-
-
84863304598
-
-
R Development Core Team. R Foundation for Statistical Computing: Vienna, Austria, ISBN 3-900051-07-0
-
R Development Core Team. R: A language and environment for statistical computing; R Foundation for Statistical Computing: Vienna, Austria, 2013; ISBN 3-900051-07-0, http://www.R-project.org.
-
(2013)
R: A Language and Environment for Statistical Computing
-
-
-
31
-
-
0003017575
-
Prediction with Gaussian Processes: From Linear Regression to Linear Prediction and beyond
-
In; Kluwer
-
Williams, C. K. I. Prediction With Gaussian Processes: From Linear Regression To Linear Prediction And Beyond. In Learning and Inference in Graphical Models; Kluwer, 1997, pp 599-621.
-
(1997)
Learning and Inference in Graphical Models
, pp. 599-621
-
-
Williams, C.K.I.1
-
32
-
-
84856043672
-
A Mathematical Theory of Communication
-
Shannon, C. A Mathematical Theory of Communication Bell Syst. Technol. J. 1948, 27, 379-423
-
(1948)
Bell Syst. Technol. J.
, vol.27
, pp. 379-423
-
-
Shannon, C.1
-
33
-
-
33646876613
-
Entropy and diversity
-
Jost, L. Entropy and diversity Oikos 2006, 113, 363-375
-
(2006)
Oikos
, vol.113
, pp. 363-375
-
-
Jost, L.1
-
34
-
-
68149132110
-
Shannon Entropy-Based Fingerprint Similarity Search Strategy
-
Wang, Y.; Geppert, H.; Bajorath, J. Shannon Entropy-Based Fingerprint Similarity Search Strategy J. Chem. Inf. Model. 2009, 49, 1687-1691
-
(2009)
J. Chem. Inf. Model.
, vol.49
, pp. 1687-1691
-
-
Wang, Y.1
Geppert, H.2
Bajorath, J.3
-
35
-
-
0000228805
-
Variability of Molecular Descriptors in Compound Databases Revealed by Shannon Entropy Calculations
-
Godden, J. W.; Stahura, F. L.; Bajorath, J. Variability of Molecular Descriptors in Compound Databases Revealed by Shannon Entropy Calculations J. Chem. Inf. Comput. Sci. 2000, 40, 796-800
-
(2000)
J. Chem. Inf. Comput. Sci.
, vol.40
, pp. 796-800
-
-
Godden, J.W.1
Stahura, F.L.2
Bajorath, J.3
-
36
-
-
70349266356
-
Comprehensive Survey on Distance/Similarity Measures between Probability Density Functions
-
Cha, S.-H. Comprehensive Survey on Distance/Similarity Measures between Probability Density Functions Int. J. Math. Models Methods Appl. Sci. 2007, 1, 300-307
-
(2007)
Int. J. Math. Models Methods Appl. Sci.
, vol.1
, pp. 300-307
-
-
Cha, S.-H.1
-
37
-
-
33750991346
-
Benchmarking Sets for Molecular Docking
-
Huang, N.; Shoichet, B. K.; Irwin, J. J. Benchmarking Sets for Molecular Docking J. Med. Chem. 2006, 49, 6789-6801
-
(2006)
J. Med. Chem.
, vol.49
, pp. 6789-6801
-
-
Huang, N.1
Shoichet, B.K.2
Irwin, J.J.3
|