Genomic characterisation of three mapputta group viruses, a serogroup of Australian and Papua New Guinean bunyaviruses associated with human disease

PLoS ONE

Volumn 10, Issue 1, 2015, Pages

  Gauci, Penelope J ^a   McAllister, Jane ^a   Mitchell, Ian R ^a   Boyle, David B ^b   Bulach, Dieter M ^b,d   Weir, Richard P ^c   Melville, Lorna F ^c   Gubala, Aneta J ^a  

^a DEFENCE SCIENCE AND TECHNOLOGY ORGANISATION   (Australia)

^b CSIRO   (Australia)

^c Berrimah Veterinary Laboratories   (Australia)

^d MONASH UNIVERSITY   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

POLYPROTEIN; RNA DIRECTED RNA POLYMERASE; VIRUS NUCLEOPROTEIN; VIRUS PROTEIN;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ARTICLE; AUSTRALIA; BUFFALO CREEK VIRUS; BUNYAVIRIDAE; HIGH THROUGHPUT SEQUENCING; MAPPUTTA VIRUS; MAPRIK VIRUS; MOSQUITO; NONHUMAN; OPEN READING FRAME; ORTHOBUNYAVIRUS; PAPUA NEW GUINEA; PHYLOGENY; TERMINAL SEQUENCE; VIRUS GENOME; VIRUS ISOLATION; VIRUS NEUTRALIZATION; AMINO ACID SEQUENCE; ANIMAL; BUNYAVIRUS INFECTION; DNA SEQUENCE; GENETICS; GENOMICS; HUMAN; PROCEDURES; SEROTYPE; SOUTH AUSTRALIA; VIROLOGY;

BUNYAVIRIDAE; ORTHOBUNYAVIRUS;

AMINO ACID SEQUENCE; ANIMALS; BUNYAVIRIDAE INFECTIONS; CULICIDAE; GENOME, VIRAL; GENOMICS; HUMANS; ORTHOBUNYAVIRUS; PAPUA NEW GUINEA; PHYLOGENY; SEQUENCE ANALYSIS, DNA; SEROGROUP; SOUTH AUSTRALIA;

EID: 84921033922     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0116561     Document Type: Article

References (59)

1. Plyusnin A, Beaty BJ, Elliott RM, Goldbach R, Kormelink R, et al. (2012) Bunyaviridae. In: King AMQ, Adams MJ, Carstens EB and Lefkowitz EJ, editors. Virus Taxonomy: Ninth Report of the International Committee on Taxonomy of Viruses. San Diego: Elsevier Academic Press. pp. 725-741.PMID: 22678719
2. Elliott RM, Blakqori G (2011) Molecular Biology of Orthobunyaviruses. In: Plyusnin A and Elliott RM, editors. Bunyaviridae Molecular and Cellular Biology. Norfolk: Caister Academic Press. pp. 1-39.
3. Newton SE, Short NJ, Irving AM, Dalgarno L (1983) The Mapputta group of arboviruses: Ultrastructural and molecular studies which place the group in the bunyavirus genus of the family Bunyaviridae. Aust J Exp Biol Med Sci 61: 201-217. doi: 10.1038/icb.1983.19 PMID: 6411055
4. Doherty RL, Carley JG, Mackerras MJ, Marks EN (1963) Studies of arthropod-borne virus infections in Queensland. III. Aust J Exp Biol Med Sci 41: 17-39. doi: 10.1038/icb.1963.2 PMID: 14028387
5. Doherty RL, Whitehead RH, Wetters EJ, Gorman BM, Carley JG (1970) A survey of antibody to 10 arboviruses (Koongol group, Mapputta group and ungrouped) isolated in Queensland. Trans R Soc Trop Med Hyg 64: 748-753. doi: 10.1016/0035-9203(70)90017-9 PMID: 5533929
6. Karabatsos N (1985) The American Committee on Arthropod-borne Viruses: International Catalog of Arboviruses Including Certain Other Viruses of Vertebrates. San Antonio: American Society for Tropical Medicine and Hygiene.
7. Weir R (2002) Classification and identification of viruses isolated from mosquitoes in the Northern Territory, 1982-1992, using a range of techniques. PhD Thesis, University of Sydney.
8. Bishop DHL, Calisher CH, Casals J, Chumakov MP, Gaidamovich SY, et al. (1980) Bunyaviridae. Intervirology 14: 125-143. doi: 10.1159/000149174 PMID: 6165702
9. Doherty RL, Whitehead RH, Judith Wetters E, Gorman BM (1968) Studies of the epidemiology of arthropod-borne virus infections at Mitchell River Mission, Cape York Peninsula, North Queensland. II. Arbovirus infections of mosquitoes, man and domestic fowls, 1963-1966. Trans R Soc Trop Med Hyg 62: 430-438.doi: 10.1016/0035-9203(68)90095-3 PMID: 5659236
10. Gard G, Marshall ID, Woodroofe GM (1973) Annually recurrent epidemic polyarthritis and Ross River virus activity in a coastal area of New South Wales. II. Mosquitoes, viruses, and wildlife. Am J Trop Med Hyg 22: 551-560.PMID: 4146218
11. Gubala AJ, Proll DF, Barnard RT, Cowled CJ, Crameri SG, et al. (2008) Genomic characterisation of Wongabel virus reveals novel genes within the Rhabdoviridae. Virol 376: 13-23. doi: 10.1016/j.virol.2008.03.004 PMID: 18436275
12. Boyle DB, Bulach DM, Amos-Ritchie R, Adams MM, Walker PJ, et al. (2012) Genomic sequences of australian bluetongue virus prototype serotypes reveal global relationships and possible routes of entry into Australia. J Virol 86: 6724-6731. doi: 10.1128/JVI.00182-12 PMID: 22514341
13. Zerbino DR, Birney E (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829. doi: 10.1101/gr.074492.107 PMID: 18349386
14. Rutherford K, Parkhill J, Crook J, Horsnell T, Rice P, et al. (2000) Artemis: sequence visualization and annotation. Bioinformatics 16: 944-945. doi: 10.1093/bioinformatics/16.10.944 PMID: 11120685
15. Rost B, Liu J, Nair R, Wrzeszczynski KO, Ofran Y (2003) Automatic prediction of protein function. Cell Mol Life Sci 60: 2637-2650. doi: 10.1007/s00018-003-3114-8 PMID: 14685688
16. Petersen TN, Brunak S, Von Heijne G, Nielsen H (2011) SignalP 4.0: Discriminating signal peptides from transmembrane regions. Nat Methods 8: 785-786. doi: 10.1038/nmeth.1701 PMID: 21959131
17. Rice P, Longden L, Bleasby A (2000) EMBOSS: The European Molecular Biology Open Software Suite. Trends in Genetics 16: 276-277. doi: 10.1016/S0168-9525(00)02024-2 PMID: 10827456
18. Edgar RC (2004) MUSCLE: Multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797. doi: 10.1093/nar/gkh340 PMID: 15034147
19. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, et al. (2011) MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739. doi: 10.1093/molbev/msr121 PMID: 21546353
20. Drummond AJ, Suchard MA, Xie D, Rambaut A (2012) Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol 29: 1969-1973. doi: 10.1093/molbev/mss075 PMID: 22367748
21. Brandt WE, Buescher EL, Hetrick FM (1967) Production and characterization of arbovirus antibody in mouse ascitic fluid. Am J Trop Med Hyg 16: 339-347. PMID: 4164665
22. Reed LJ, Muench H (1938) A simple method of estimating fifty percent endpoints. Am J Hyg 27: 493-497.
23. Barr JN, Wertz GW (2004) Bunyamwera Bunyavirus RNA Synthesis Requires Cooperation of 3′- and 5′-Terminal Sequences. J Virol 78: 1129-1138. doi: 10.1128/JVI.78.3.1129-1138.2004 PMID: 14722268
24. Barr JN, Elliott RM, Dunn EF, Wertz GW (2003) Segment-specific terminal sequences of Bunyamwera bunyavirus regulate genome replication. Virol 311: 326-338. doi: 10.1016/S0042-6822(03)00130-2 PMID: 12842622
25. Kohl A, Dunn EF, Lowen AC, Elliott RM (2004) Complementarity, sequence and structural elements within the 3′ and 5′ non-coding regions of the Bunyamwera orthobunyavirus S segment determine promoter strength. J Gen Virol 85: 3269-3278. doi: 10.1099/vir.0.80407-0 PMID: 15483240
26. Osborne JC, Elliott RM (2000) RNA binding properties of Bunyamwera virus nucleocapsid protein and selective binding to an element in the 5′ terminus of the negative-sense S segment. J Virol 74: 9946-9952. doi: 10.1128/JVI.74.21.9946-9952.2000 PMID: 11024122
27. Dunn EF, Pritlove DC, Jin H, Elliott RM (1995) Transcription of a recombinant bunyavirus RNA template by transiently expressed bunyavirus proteins. Virol 211: 133-143. doi: 10.1006/viro.1995.1386 PMID: 7544044
28. Mir MA, Panganiban AT (2004) Trimeric hantavirus nucleocapsid protein binds specifically to the viral RNA panhandle. J Virol 78: 8281-8288. doi: 10.1128/JVI.78.15.8281-8288.2004 PMID: 15254200
29. Yanase T, Yoshida K, Ohashi S, Kato T, Tsuda T (2003) Sequence analysis of the medium RNA segment of three Simbu serogroup viruses, Akabane, Aino, and Peaton viruses. Virus Res 93: 63-69. doi: 10.1016/S0168-1702(03)00066-2 PMID: 12727343
30. Akashi H, Kaku Y, Kong XG, Pang H (1997) Sequence determination and phylogenetic analysis of the Akabane bunyavirus S RNA genome segment. J Gen Virol 78: 2847-2851. PMID: 9367371
31. Coffey LL, Page BL, Greninger AL, Herring BL, Russell RC, et al. (2014) Enhanced arbovirus surveillance with deep sequencing: Identification of novel rhabdoviruses and bunyaviruses in Australian mosquitoes. Virol 448: 146-158. doi: 10.1016/j.virol.2013.09.026 PMID: 24314645
32. Eifan SA, Elliott RM (2009) Mutational analysis of the bunyamwera orthobunyavirus nucleocapsid protein gene. J Virol 83: 11307-11317. doi: 10.1128/JVI.01460-09 PMID: 19710139
33. Savji N, Palacios G, da Rosa AT, Hutchison S, Celone C, et al. (2011) Genomic and phylogenetic characterization of Leanyer virus, a novel orthobunyavirus isolated in northern Australia. J Gen Virol 92: 1676-1687. doi: 10.1099/vir.0.028308-0 PMID: 21402599
34. Bowen MD, Jackson AO, Bruns TD, Hacker DL, Hardy JL (1995) Determination and comparative analysis of the small RNA genomic sequences of California encephalitis, Jamestown Canyon, Jerry Slough, Melao, Keystone and Trivittatus viruses (Bunyaviridae, genus Bunyavirus, California serogroup). J Gen Virol 76: 559-572. doi: 10.1099/0022-1317-76-3-559 PMID: 7897347
35. Dunn EF, Pritlove DC, Elliott RM (1994) The S RNA genome segments of Batai, Cache Valley, Guaroa, Kairi, Lumbo, Main Drain and Northway bunyaviruses: Sequence determination and analysis. J Gen Virol 75: 597-608. doi: 10.1099/0022-1317-75-3-597 PMID: 8126455
36. Nunes MRT, Travassos Da Rosa APA, Weaver SC, Tesh RB, Vasconcelos PFC (2005) Molecular epidemiology of group C viruses (Bunyaviridae, Orthobunyavirus) isolated in the Americas. J Virol 79: 10561-10570. doi: 10.1128/JVI.79.16.10561-10570.2005 PMID: 16051848
37. Saeed MF, Wang H, Nunes M, Vasconcelos PFC, Weaver SC, et al. (2000) Nucleotide sequences and phylogeny of the nucleocapsid gene of Oropouche virus. J Gen Virol 81: 743-748. PMID: 10675412
38. Mohamed M, McLees A, Elliott RM (2009) Viruses in the Anopheles A, Anopheles B, and Tete serogroups in the Orthobunyavirus genus (family Bunyaviridae) do not encode an NSs protein. J Virol 83: 7612-7618. doi: 10.1128/JVI.02080-08 PMID: 19439468
39. Chowdhary R, Street C, da Rosa AT, Nunes MRT, Tee KK, et al. (2012) Genetic characterization of the Wyeomyia group of orthobunyaviruses and their phylogenetic relationships. J Gen Virol 93: 1023-1034. doi: 10.1099/vir.0.039479-0 PMID: 22278828
40. Blakqori G, Delhaye S, Habjan M, Blair CD, Sánchez-Vargas I, et al. (2007) La Crosse bunyavirus nonstructural protein NSs serves to suppress the type I interferon system of mammalian hosts. J Virol 81: 4991-4999. doi: 10.1128/JVI.01933-06 PMID: 17344298
41. Weber F, Bridgen A, Fazakerley JK, Streitenfeld H, Kessler N, et al. (2002) Bunyamwera Bunyavirus nonstructural protein NSs counteracts the induction of alpha/beta interferon. J Virol 76: 7949-7955. doi: 10.1128/JVI.76.16.7949-7955.2002 PMID: 12133999
42. Bridgen A, Weber F, Fazakerley JK, Elliott RM (2001) Bunyamwera bunyavirus nonstructural protein NSs is a nonessential gene product that contributes to viral pathogenesis. P Natl Acad Sci USA 98: 664-669. doi: 10.1073/pnas.98.2.664
43. Fazakerley JK, Gonzalez-Scarano F, Strickler J, Dietzschold B, Karush F, et al. (1988) Organization of the middle RNA segment of snowshoe hare bunyavirus. Virol 167: 422-432. doi: 10.1016/0042-6822(88)90104-3 PMID: 2974218
44. Briese T, Rambaut A, Lipkin WI (2004) Analysis of the medium (M) segment sequence of Guaroa virus and its comparison to other orthobunyaviruses. J Gen Virol 85: 3071-3077. doi: 10.1099/vir.0.80122-0 PMID: 15448370
45. Briese T, Kapoor V, Lipkin WI (2007) Natural M-segment reassortment in Potosi and Main Drain viruses: Implications for the evolution of orthobunyaviruses. Arch Virol 152: 2237-2247. doi: 10.1007/s00705-007-1069-z PMID: 17891328
46. Shi X, Brauburger K, Elliott RM (2005) Role of N-linked glycans on Bunyamwera virus glycoproteins in intracellular trafficking, protein folding, and virus infectivity. J Virol 79: 13725-13734. doi: 10.1128/JVI.79.21.13725-13734.2005 PMID: 16227292
47. Poch O, Sauvaget I, Delarue M, Tordo N (1989) Identification of four conserved motifs among the RNA-dependent polymerase encoding elements. EMBO J 8: 3867-3874. PMID: 2555175
48. Muller R, Poch O, Delarue M, Bishop DHL, Bouloy M (1994) Rift valley fever virus L segment: Correction of the sequence and possible functional role of newly identified regions conserved in RNA-dependent polymerases. J Gen Virol 75: 1345-1352. doi: 10.1099/0022-1317-75-6-1345 PMID: 7515937
49. Aquino VH, Moreli ML, Moraes Figueiredo LT (2003) Analysis of oropouche virus L protein amino acid sequence showed the presence of an additional conserved region that could harbour an important role for the polymerase activity. Arch Virol 148: 19-28. doi: 10.1007/s00705-002-0913-4 PMID: 12536293
50. Briese T, Calisher CH, Higgs S (2013) Viruses of the family Bunyaviridae: Are all available isolates reassortants? Virol 446: 207-216. doi: 10.1016/j.virol.2013.07.030 PMID: 24074583
51. Boughton CR, Hawkes RA, Naim HM (1990) Arbovirus infection in humans in NSW: Seroprevalence and pathogenicity of certain Australian bunyaviruses. Aust N Z J Med 20: 51-55. doi: 10.1111/j.1445-5994.1990.tb00371.x PMID: 2108660
52. Doherty RL, Carley JG, Standfast HA (1973) Isolation of arbovirus from mosquitoes, biting midges, sandflies and vertebrates collected in Queensland, 1969 and 1970. Trans R Soc Trop Med Hyg 67: 536-543. doi: 10.1016/0035-9203(73)90084-9 PMID: 4150461
53. Hooper PT, Lunt RA, Gould AR, Samaratunga H, Hyatt AD, et al. (1997) A new lyssavirus - The first endemic rabies-related virus recognized in Australia. Bull Inst Pasteur 95: 209-218. doi: 10.1016/S0020-2452(97)83529-5
54. Marshall ID, Woodroofe GM, Hirsch S (1982) Viruses recovered from mosquitoes and wildlife serum collected in the Murray Valley of south-eastern Australia, February 1974, during an epidemic of encephalitis. Aust J Exp Biol Med Sci 60: 457-470. doi: 10.1038/icb.1982.51 PMID: 6299258
55. Standfast HA, Dyce AL, St George TD, Muller MJ, Doherty RL, et al. (1984) Isolation of arboviruses from insects collected at Beatrice Hill, Northern Territory of Australia, 1974-1976. Aust J Biol Sci 37: 351-366. PMID: 6152599
56. Huppatz C, Durrheim DN, Levi C, Dalton C, Williams D, et al. (2009) Etiology of Encephalitis in Australia, 1990-2007. Emerg Infect Dis 15: 1359-1365. doi: 10.3201/eid1509.081540 PMID: 19788802
57. Huppatz C, Kelly PM, Levi C, Dalton C, Williams D, et al. (2009) Encephalitis in Australia, 1979-2006: trends and aetiologies. Comm Dis Intell 33: 192-197.PMID: 19877537
58. Beer M, Conraths FJ, Van Der Poel WHM (2013) "Schmallenberg virus" - A novel orthobunyavirus emerging in Europe. Epidemiol Infect 141: 1-8. doi: 10.1017/S0950268812002245 PMID: 23046921
59. Yu XJ, Liang MF, Zhang SY, Liu Y, Li JD, et al. (2011) Fever with thrombocytopenia associated with a novel bunyavirus in China. N Engl J Med 364: 1523-1532. doi: 10.1056/NEJMoa1010095 PMID: 21410387