메뉴 건너뛰기




Volumn 30, Issue , 2015, Pages 219-224

Homologous recombination in pestiviruses: Identification of three putative novel events between different subtypes/genogroups

Author keywords

Evolution; Pestivirus; Phylogeny; RDP; Recombination

Indexed keywords

ARTICLE; BOVINE VIRAL DIARRHEA VIRUS 1; BOVINE VIRAL DIARRHEA VIRUS 2; CLASSICAL SWINE FEVER VIRUS; CONTROLLED STUDY; GENE CONVERSION; GENETIC ALGORITHM; GENETIC VARIABILITY; HOMOLOGOUS RECOMBINATION; HORIZONTAL GENE TRANSFER; NONHUMAN; PESTIVIRUS; PHYLOGENY; VIRUS GENOME; VIRUS RECOMBINANT; VIRUS RECOMBINATION; VIRUS REPLICATION; VIRUS STRAIN; CLASSIFICATION; CLUSTER ANALYSIS; GENETICS; GENOTYPE; MOLECULAR EVOLUTION;

EID: 84921032303     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2014.12.032     Document Type: Article
Times cited : (31)

References (37)
  • 1
    • 0035423231 scopus 로고    scopus 로고
    • Evidence for the presence of two novel pestivirus species
    • Avalos-Ramirez R., Orlich M., Thiel H.J., Becher P. Evidence for the presence of two novel pestivirus species. Virology 2001, 286:456-465.
    • (2001) Virology , vol.286 , pp. 456-465
    • Avalos-Ramirez, R.1    Orlich, M.2    Thiel, H.J.3    Becher, P.4
  • 2
    • 79954465599 scopus 로고    scopus 로고
    • RNA recombination in pestiviruses: cellular RNA sequences in viral genomes highlight the role of host factors for viral persistence and lethal disease
    • Becher P., Tautz N. RNA recombination in pestiviruses: cellular RNA sequences in viral genomes highlight the role of host factors for viral persistence and lethal disease. RNA Biol. 2011, 8:216-224.
    • (2011) RNA Biol. , vol.8 , pp. 216-224
    • Becher, P.1    Tautz, N.2
  • 4
    • 34250757252 scopus 로고    scopus 로고
    • An exact nonparametric method for inferring mosaic structure in sequence triplets
    • Boni M.F., Posada D., Feldman M.W. An exact nonparametric method for inferring mosaic structure in sequence triplets. Genetics 2007, 1047:1035-1047.
    • (2007) Genetics , vol.1047 , pp. 1035-1047
    • Boni, M.F.1    Posada, D.2    Feldman, M.W.3
  • 5
    • 44449124478 scopus 로고    scopus 로고
    • Identification of a recombinant dengue virus type 1 with 3 recombination regions in natural populations in Guangdong province, China
    • Chen S.P., Yu M., Jiang T., Deng Y.Q., Qin C.F., Han J.F., Qin E.D. Identification of a recombinant dengue virus type 1 with 3 recombination regions in natural populations in Guangdong province, China. Arch. Virol. 2008, 153:1175-1179.
    • (2008) Arch. Virol. , vol.153 , pp. 1175-1179
    • Chen, S.P.1    Yu, M.2    Jiang, T.3    Deng, Y.Q.4    Qin, C.F.5    Han, J.F.6    Qin, E.D.7
  • 7
    • 0036077760 scopus 로고    scopus 로고
    • Phylogenetic analysis of Brazilian bovine viral diarrhea virus type 2 (BVDV-2) isolates: evidence for a subgenotype within BVDV-2
    • Flores E.F., Ridpath J.F., Weiblen R., Vogel F.S.F., Gil L.H.V.G. Phylogenetic analysis of Brazilian bovine viral diarrhea virus type 2 (BVDV-2) isolates: evidence for a subgenotype within BVDV-2. Virus Res. 2002, 87:51-60.
    • (2002) Virus Res. , vol.87 , pp. 51-60
    • Flores, E.F.1    Ridpath, J.F.2    Weiblen, R.3    Vogel, F.S.F.4    Gil, L.H.V.G.5
  • 8
    • 78650527023 scopus 로고    scopus 로고
    • Genetic and antigenic typing of border disease virus (BDV) isolates from Italy reveals the existence of a novel BDV group
    • Giammarioli M., La Rocca S.A., Steinbach F., Casciari C., De Mia G.M. Genetic and antigenic typing of border disease virus (BDV) isolates from Italy reveals the existence of a novel BDV group. Vet. Microbiol. 2011, 147:231-236.
    • (2011) Vet. Microbiol. , vol.147 , pp. 231-236
    • Giammarioli, M.1    La Rocca, S.A.2    Steinbach, F.3    Casciari, C.4    De Mia, G.M.5
  • 9
    • 0033753825 scopus 로고    scopus 로고
    • Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences
    • Gibbs M.J., Armstrong J.S., Gibbs A.J. Sister-scanning: a Monte Carlo procedure for assessing signals in recombinant sequences. Bioinformatics 2000, 16:573-582.
    • (2000) Bioinformatics , vol.16 , pp. 573-582
    • Gibbs, M.J.1    Armstrong, J.S.2    Gibbs, A.J.3
  • 10
    • 0031787409 scopus 로고    scopus 로고
    • Application of a computer program for genetic typing of classical swine fever virus isolates from Germany
    • Greiser-Wilke I., Depner K., Fritzemeier J., Haas L., Moening V. Application of a computer program for genetic typing of classical swine fever virus isolates from Germany. J. Virol. Methods 1998, 75:141-150.
    • (1998) J. Virol. Methods , vol.75 , pp. 141-150
    • Greiser-Wilke, I.1    Depner, K.2    Fritzemeier, J.3    Haas, L.4    Moening, V.5
  • 11
    • 34248232907 scopus 로고    scopus 로고
    • Evidence of natural recombination in classical swine fever virus
    • He C.Q., Ding N.Z., Chen J.G., Li Y.L. Evidence of natural recombination in classical swine fever virus. Virus Res. 2007, 126:179-185.
    • (2007) Virus Res. , vol.126 , pp. 179-185
    • He, C.Q.1    Ding, N.Z.2    Chen, J.G.3    Li, Y.L.4
  • 12
    • 4544297468 scopus 로고    scopus 로고
    • Evolutionary origin of the Jiv90 gene of pestivirus
    • Hughes A.L. Evolutionary origin of the Jiv90 gene of pestivirus. Infect. Genet. Evol. 2004, 4:329-333.
    • (2004) Infect. Genet. Evol. , vol.4 , pp. 329-333
    • Hughes, A.L.1
  • 13
    • 84901340221 scopus 로고    scopus 로고
    • Mixed triple: allied viruses in unique recent isolates of highly virulent type 2 bovine viral diarrhea virus detected by deep sequencing
    • Jenckel M., Höper D., Schirrmeier H., Goller K.V., Hoffmann B., Beer M. Mixed triple: allied viruses in unique recent isolates of highly virulent type 2 bovine viral diarrhea virus detected by deep sequencing. J. Virol. Methods 2014, 88:6983-6992.
    • (2014) J. Virol. Methods , vol.88 , pp. 6983-6992
    • Jenckel, M.1    Höper, D.2    Schirrmeier, H.3    Goller, K.V.4    Hoffmann, B.5    Beer, M.6
  • 14
    • 84899871810 scopus 로고    scopus 로고
    • Vaccination influences the evolution of classical swine fever virus
    • Ji W., Niu D.D., Si H.L., Ding N.Z., He C.Q. Vaccination influences the evolution of classical swine fever virus. Infect. Genet. Evol. 2014, 25:69-77.
    • (2014) Infect. Genet. Evol. , vol.25 , pp. 69-77
    • Ji, W.1    Niu, D.D.2    Si, H.L.3    Ding, N.Z.4    He, C.Q.5
  • 15
    • 4544248688 scopus 로고    scopus 로고
    • Homologous recombination in bovine pestiviruses phylogenetic and statistic evidence
    • Jones L.R., Weber E.L. Homologous recombination in bovine pestiviruses phylogenetic and statistic evidence. Infect. Genet. Evol. 2004, 4:335-343.
    • (2004) Infect. Genet. Evol. , vol.4 , pp. 335-343
    • Jones, L.R.1    Weber, E.L.2
  • 16
    • 0036196640 scopus 로고    scopus 로고
    • A natural intergenotypic recombinant of hepatitis C virus identified in St. Petersburg
    • Kalinina O., Norder H., Mukomolov S., Magnius L.O. A natural intergenotypic recombinant of hepatitis C virus identified in St. Petersburg. J. Virol. 2002, 76:4034-4043.
    • (2002) J. Virol. , vol.76 , pp. 4034-4043
    • Kalinina, O.1    Norder, H.2    Mukomolov, S.3    Magnius, L.O.4
  • 17
    • 34548220021 scopus 로고    scopus 로고
    • Identification of a novel virus in pigs - Bungowannah virus: a possible new species of pestivirus
    • Kirkland P.D., Frost M.J., Finlaison D.S., King K.R., Ridpath J.F., Gu X. Identification of a novel virus in pigs - Bungowannah virus: a possible new species of pestivirus. Virus Res. 2007, 129:26-34.
    • (2007) Virus Res. , vol.129 , pp. 26-34
    • Kirkland, P.D.1    Frost, M.J.2    Finlaison, D.S.3    King, K.R.4    Ridpath, J.F.5    Gu, X.6
  • 18
    • 84999176767 scopus 로고    scopus 로고
    • Whole-genome sequence of a classical swine fever virus isolated from the Uttarakhand state of India
    • e00371-14.
    • Kumar R., Rajak K., Chandra T., Thapliyal A., Muthuchelvan D., Sudhakar B. Whole-genome sequence of a classical swine fever virus isolated from the Uttarakhand state of India. Genome Announc. 2014, 2:e00371-14.
    • (2014) Genome Announc. , vol.2
    • Kumar, R.1    Rajak, K.2    Chandra, T.3    Thapliyal, A.4    Muthuchelvan, D.5    Sudhakar, B.6
  • 19
    • 0029933684 scopus 로고    scopus 로고
    • Classical swine fever virus diversity and evolution
    • Lowings P., Ibata G., Needham J., Paton D. Classical swine fever virus diversity and evolution. J. Gen. Virol. 1996, 77:1311-1321.
    • (1996) J. Gen. Virol. , vol.77 , pp. 1311-1321
    • Lowings, P.1    Ibata, G.2    Needham, J.3    Paton, D.4
  • 20
    • 84875255058 scopus 로고    scopus 로고
    • Flaviviridae
    • Academic Press, London, N.J. MacLachlan, E.J. Dubovi (Eds.)
    • MacLachlan N.J., Dubovi E.J. Flaviviridae. Fenner's Veterinary Virology 2011, 467-481. Academic Press, London. N.J. MacLachlan, E.J. Dubovi (Eds.).
    • (2011) Fenner's Veterinary Virology , pp. 467-481
    • MacLachlan, N.J.1    Dubovi, E.J.2
  • 21
    • 0033824415 scopus 로고    scopus 로고
    • RDP: detection of recombination amongst aligned sequences
    • Martin D., Rybicki E. RDP: detection of recombination amongst aligned sequences. Bioinformatics 2000, 16:562-563.
    • (2000) Bioinformatics , vol.16 , pp. 562-563
    • Martin, D.1    Rybicki, E.2
  • 22
    • 13144283628 scopus 로고    scopus 로고
    • A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints
    • Martin D.P., Posada D., Crandall K.A., Williamson C. A modified bootscan algorithm for automated identification of recombinant sequences and recombination breakpoints. AIDS Res. Hum. Retroviruses 2005, 21:98-102.
    • (2005) AIDS Res. Hum. Retroviruses , vol.21 , pp. 98-102
    • Martin, D.P.1    Posada, D.2    Crandall, K.A.3    Williamson, C.4
  • 24
    • 0033590220 scopus 로고    scopus 로고
    • Possible emergence of new geminiviruses by frequent recombination
    • Padidam M., Sawyer S., Fauquet C.M. Possible emergence of new geminiviruses by frequent recombination. Virology 1999, 265:218-225.
    • (1999) Virology , vol.265 , pp. 218-225
    • Padidam, M.1    Sawyer, S.2    Fauquet, C.M.3
  • 25
  • 26
    • 0035923699 scopus 로고    scopus 로고
    • Evaluation of methods for detecting recombination from DNA sequences: computer simulations
    • Posada D., Crandall K.A. Evaluation of methods for detecting recombination from DNA sequences: computer simulations. PNAS 2001, 98:13757-13762.
    • (2001) PNAS , vol.98 , pp. 13757-13762
    • Posada, D.1    Crandall, K.A.2
  • 27
    • 9944248535 scopus 로고    scopus 로고
    • Genetic and antigenic characterization of an atypical pestivirus isolate, a putative member of a novel pestivirus species
    • Schirrmeier H., Strebelow G., Depner K., Hoffmann B., Beer M. Genetic and antigenic characterization of an atypical pestivirus isolate, a putative member of a novel pestivirus species. J. Gen. Virol. 2004, 85:3647-3652.
    • (2004) J. Gen. Virol. , vol.85 , pp. 3647-3652
    • Schirrmeier, H.1    Strebelow, G.2    Depner, K.3    Hoffmann, B.4    Beer, M.5
  • 28
    • 84864249998 scopus 로고    scopus 로고
    • Recombination in hepatitis C virus: identification of four novel naturally occurring inter-subtype recombinants
    • Shi W., Freitas I.T., Zhu C., Zheng W., Hall W.W., Higgins D.G. Recombination in hepatitis C virus: identification of four novel naturally occurring inter-subtype recombinants. PLoS ONE 2012, 7:e41997.
    • (2012) PLoS ONE , vol.7 , pp. e41997
    • Shi, W.1    Freitas, I.T.2    Zhu, C.3    Zheng, W.4    Hall, W.W.5    Higgins, D.G.6
  • 31
    • 0026708873 scopus 로고
    • Analyzing the mosaic structure of genes
    • Smith J.M. Analyzing the mosaic structure of genes. J. Mol. Evol. 1992, 34:126-129.
    • (1992) J. Mol. Evol. , vol.34 , pp. 126-129
    • Smith, J.M.1
  • 36
    • 12844262273 scopus 로고    scopus 로고
    • Characterization of a novel pestivirus originating from a pronghorn antelope
    • Vilcek S., Ridpath J.F., Van Campen H., Cavender J.L., Warg J. Characterization of a novel pestivirus originating from a pronghorn antelope. Virus Res. 2005, 108:187-193.
    • (2005) Virus Res. , vol.108 , pp. 187-193
    • Vilcek, S.1    Ridpath, J.F.2    Van Campen, H.3    Cavender, J.L.4    Warg, J.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.