Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms

BMC Bioinformatics

Volumn 15, Issue 1, 2014, Pages

  Speiser, Daniel I ^a,b   Pankey, M Sabrina ^a   Zaharoff, Alexander K ^a   Battelle, Barbara A ^c   Bracken Grissom, Heather D ^d   Breinholt, Jesse W ^e   Bybee, Seth M ^f   Cronin, Thomas W ^g   Garm, Anders ^h   Lindgren, Annie R ⁱ   Patel, Nipam H ^j   Porter, Megan L ^k   Protas, Meredith E ^l   Rivera, Ajna S ^m   Serb, Jeanne M ⁿ   Zigler, Kirk S ^o   Crandall, Keith A ^p,q   Oakley, Todd H ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF SOUTH CAROLINA   (United States)

^c UNIVERSITY OF FLORIDA   (United States)

^d FLORIDA INTERNATIONAL UNIVERSITY   (United States)

^e UNIVERSITY OF FLORIDA   (United States)

^f BRIGHAM YOUNG UNIVERSITY   (United States)

^g UNIVERSITY OF MARYLAND BALTIMORE COUNTY   (United States)

^h UNIVERSITY OF COPENHAGEN   (Denmark)

ⁱ PORTLAND STATE UNIVERSITY   (United States)

^j UNIVERSITY OF CALIFORNIA   (United States)

^k UNIVERSITY OF SOUTH DAKOTA   (United States)

^l DOMINICAN UNIVERSITY OF CALIFORNIA   (United States)

^m UNIVERSITY OF THE PACIFIC   (United States)

ⁿ IOWA STATE UNIVERSITY   (United States)

^o UNIVERSITY OF THE SOUTH   (United States)

^p GEORGE WASHINGTON UNIVERSITY   (United States)

^q DEPARTMENT OF PALEOBIOLOGY   (United States)

more..

Author keywords

Bioinformatics; Evolution; Eyes; Galaxy; Next generation sequence analysis; Orthology; Phototransduction; Transcriptomes; Vision

Indexed keywords

BIOINFORMATICS; BIOLOGY; GALAXIES; MAXIMUM LIKELIHOOD; MOLLUSCS; OPEN SYSTEMS; THROUGHPUT; TISSUE; TREES (MATHEMATICS); VISION; WORK SIMPLIFICATION;

EVOLUTION; EYES; ORTHOLOGY; PHOTOTRANSDUCTION; SEQUENCE ANALYSIS; TRANSCRIPTOMES;

GENES;

ARTHROPODA; CEPHALOPODA; CNIDARIA; CUBOZOA; METAZOA; MOLLUSCA;

EYE PROTEIN; TRANSCRIPTOME;

ALGORITHM; ANIMAL; GENETICS; GENOME; HIGH THROUGHPUT SEQUENCING; LIGHT; MOLECULAR GENETICS; PHYLOGENY; PROCEDURES; SEQUENCE ANALYSIS; STATISTICAL MODEL; VISION;

ALGORITHMS; ANIMALS; EYE PROTEINS; GENOME; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; LIGHT; LIKELIHOOD FUNCTIONS; MOLECULAR SEQUENCE ANNOTATION; PHYLOGENY; SEQUENCE ANALYSIS, PROTEIN; TRANSCRIPTOME; VISION, OCULAR;

EID: 84920989386     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/s12859-014-0350-x     Document Type: Article

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