Evolution and classification of oncogenic human papillomavirus types and variants associated with cervical cancer

Cervical Cancer: Methods and Protocols

Volumn , Issue , 2014, Pages 3-26

  Chen, Zigui ^a   De Freitas, Luciana Bueno ^a   Burk, Robert D ^a  

^a ALBERT EINSTEIN COLLEGE OF MEDICINE   (United States)

Author keywords

Evolution; Genus; Papillomavirus; Species; Taxonomy; Type; Variant

Indexed keywords

EID: 84920868512     PISSN: None     EISSN: None     Source Type: Book    
DOI: 10.1007/978-1-4939-2013-6_1     Document Type: Chapter

References (14)

1. de Villiers EM, Fauquet C, Broker TR, Bernard HU, zur Hausen H (2004) Classification of papillomaviruses. Virology 324(1): 17-27
2. Bernard HU, Burk RD, Chen Z, van Doorslaer K, Hausen H, de Villiers EM (2010) Classification of papillomaviruses (PVs) based on 189 PV types and proposal of taxonomic amendments. Virology 401(1):70-79. doi: 10.1016/j.virol.2010.02.002
3. Fauquet CM, Mayo MA, Maniloff J, Desselberger U, Ball LA (2005) Family papillomaviridae. In: Virus taxonomy. The eight report of the international committee on taxonomy of viruses. Elsevier, Amsterdam, pp 239-255
4. Chen Z, Schiffman M, Herrero R, Desalle R, Anastos K, Segondy M, Sahasrabuddhe VV, Gravitt PE, Hsing AW, Burk RD (2011) Evolution and taxonomic classification of human papillomavirus 16 (HPV16)-related variant genomes: HPV31, HPV33, HPV35, HPV52, HPV58 and HPV67. PLoS One 6(5):e20183. doi: 10.1371/journal.pone.0020183
5. Chen Z, Schiffman M, Herrero R, Desalle R, Anastos K, Segondy M, Sahasrabuddhe VV, Gravitt PE, Hsing AW, Burk RD (2013) Evolution and taxonomic classification of alphapapillomavirus 7 complete genomes: HPV18, HPV39, HPV45, HPV59, HPV68 and HPV70. PLoS One 8(8):e72565. doi: 10.1371/journal.pone.0072565
6. Burk RD, Harari A, Chen Z (2013) Human papillomavirus genome variants. Virology. doi: 10.1016/j.virol.2013.07.018
7. Chen Z, DeSalle R, Schiffman M, Herrero R, Burk RD (2009) Evolutionary dynamics of variant genomes of human papillomavirus types 18, 45, and 97. J Virol 83(3):1443-1455. doi: 10.1128/JVI.02068-08
8. Bauer HM, Greer CE, Manos MM (1992) Determination of genital HPV infection using consensus PCR. In: Herrington CS, McGee JOD (eds) Diagnostic molecular pathology: a practical approach. IRL Press, Oxford, pp 131-152
9. Gravitt PE, Peyton CL, Alessi TQ, Wheeler CM, Coutlee F, Hildesheim A, Schiffman MH, Scott DR, Apple RJ (2000) Improved amplifi-cation of genital human papillomaviruses. J Clin Microbiol 38(1): 357-361
10. Kleter B, van Doorn LJ, ter Schegget J, Schrauwen L, van Krimpen K, Burger M, ter Harmsel B, Quint W (1998) Novel shortfragment PCR assay for highly sensitive broad- spectrum detection of anogenital human papillomaviruses. Am J Pathol 153(6): 1731-1739
11. van den Brule AJ, Pol R, Fransen-Daalmeijer N, Schouls LM, Meijer CJ, Snijders PJ (2002) GP5+/6+ PCR followed by reverse line blot analysis enables rapid and high-throughput identification of human papillomavirus genotypes. J Clin Microbiol 40(3): 779-787
12. Terai M, Burk RD (2001) Complete nucleotide sequence and analysis of a novel human papillomavirus (HPV 84) genome cloned by an overlapping PCR method. Virology 279(1): 109-115
13. Smith B, Chen Z, Reimers L, van Doorslaer K, Schiffman M, Desalle R, Herrero R, Yu K, Wacholder S, Wang T, Burk RD (2011) Sequence imputation of HPV16 genomes for genetic association studies. PLoS One 6(6): e21375. doi: 10.1371/journal.pone.0021375
14. Narechania A, Chen Z, Desalle R, Burk RD (2005) Phylogenetic incongruence among oncogenic genital alpha human papillomaviruses. J Virol 79(24): 15503-15510