Utility of Informative SSR Markers in the Molecular Characterization of Cytoplasmic Genetic Male Sterility-Based Hybrid and its Parents in Pigeonpea

National Academy Science Letters

Volumn 38, Issue 1, 2015, Pages 13-19

  Bohra, Abhishek ^a   Singh, I P ^a   Yadav, Ashutosh K ^b   Pathak, Abhinav ^c   Soren, K R ^a   Chaturvedi, S K ^a   Nadarajan, N ^a  

^a INDIAN INSTITUTE OF PULSES RESEARCH   (India)

^b INDIAN AGRICULTURAL RESEARCH INSTITUTE   (India)

^c NATIONAL BUREAU OF FISH GENETIC RESOURCES   (India)

Author keywords

GoT; Hybrid; Molecular marker; Pigeonpea; Polymorphism; SSR

Indexed keywords

EID: 84920760343     PISSN: 0250541X     EISSN: 22501754     Source Type: Journal    
DOI: 10.1007/s40009-014-0288-6     Document Type: Article

References (30)

1. FAOSTAT (2011) http://www.faostat.fao.org
2. Odeny DA (2007) The potential of pigeonpea (Cajanus cajan (L.) Millsp.) in Africa. Nat Resour Forum 31:297–305
3. Varshney RK, Chen W, Li Y et al (2011) Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nat Biotechnol 30:83–89
4. Bohra A, Mallikarjuna N, Saxena K, Upadhyaya H, Vales MI, Varshney RK (2010) Harnessing the potential of crop wild relatives through genomics tools for pigeonpea improvement. J Plant Biol 37:1–16
5. Saxena KB, Sultana R, Mallikarjuna N, Saxena RK, Kumar RV, Sawargaonkar SL, Varshney RK (2010) Male-sterility systems in pigeonpea and their role in enhancing yield. Plant Breed 129:125–134
6. Pulses Newsletter IIPR, January–March 2013, pp8 (http://www.iipr.res.in/pdf/newsletter_2013_5june.pdf)
7. Yuan LP (1985) A concise course in hybrid rice. Hunan Science and Technology Publishing House, China, p 168
8. Saxena RK, Saxena KB, Varshney RK (2010) Application of SSR markers for molecular characterization of hybrid parents and purity assessment of ICPH 2438 hybrid of pigeonpea [Cajanus cajan (L.) Millspaugh]. Mol Breed 26:371–380
9. Yue B, Vick BA, Cai X, Hu J (2010) Genetic mapping for the Rf1 (fertility restoration) gene in sunflower (Helianthus annuus L.) by SSR and TRAP markers. Plant Breed 129:24–28
10. Bohra A, Dubey A, Saxena RK et al (2011) Analysis of BAC-end sequences (BESs) and development of BES-SSR markers for genetic mapping and hybrid purity assessment in pigeonpea. BMC Plant Biol 11:56
11. Abdelnoor RV, Barros EG, Moreira MA (1995) Determination of genetic diversity within Brazilian soybean germplasm using random amplified polymorphic DNA techniques and comparative analysis with pedigree data. Braz J Genet 18:265–273
12. Sundaram RM, Naveenkumar B, Biradar SK et al (2008) Identification of informative SSR markers capable of distinguishing hybrid rice parental lines and their utilization in seed purity assessment. Euphytica 163:215–224
13. Reddy BVS, Ashok Kumar A, Kaul SL (2008) Alternative cytoplasmic male sterility systems in sorghum and their utilization. In: Sorghum improvement in the new millennium. International Crops Research Institute for the Semi-Arid Tropics, Patancheru 502 324, Andhra Pradesh, India, pp. 132–144
14. Wan Z, Jing B, Tu J, Ma C, Shen J, Yi B, Wen J, Huang T, Wang X, Fu T (2008) Genetic characterization of a new cytoplasmic male sterility system (hau) in Brassica juncea and its transfer to B. napus. Theor Appl Genet 116:355–362
15. Rieseberg LH, Van Fossen C, Arias D, Carter RL (1994) Cytoplasmic male-sterility in sunflower-origin, inheritance, and frequency in natural populations. J Hered 85:233–238
16. Sivaramkrishnan S, Seetha K, Reddy LJ (2002) Diversity in selected wild and cultivated species of pigeonpea using RFLP of mtDNA. Euphytica 125:21–28
17. Ratnaparkhe MB, Gupta VS, Ven Murthy MR, Ranjekar PK (1995) Genetic fingerprinting of pigeonpea (Cajanus cajan (L.) Millsp) and its wild relatives using RAPD markers. Theor Appl Genet 91:893–898
18. Panguluri SK, Janaiah J, Govil JN, Kumar PA, Sharma PC (2005) AFLP fingerprinting in pigeonpea (Cajanus cajan L. Millsp.) and its wild relatives. Genet Resour Crop Evol 53:523–531
19. Yang S, Pang W, Harper J, Carling J, Wenzl P, Huttner E, Zong X, Kilian A (2006) Low level of genetic diversity in cultivated pigeonpea compared to its wild relatives is revealed by diversity arrays technology (DArT). Theor Appl Genet 113:585–595
20. Bohra A, Saxena RK, Gnanesh BN, Saxena KB, Byregowda M, Rathore A, Kavi Kishor PB, Cook DR, Varshney RK (2012) An intra-specific consensus genetic map of pigeonpea [Cajanus cajan (L.) Millspaugh] derived from six mapping populations. Theor Appl Genet 125:1325–1338
21. Temnykh S, DeClerck G, Lukashova A, Lipovich L, Cartinhour S, McCouch S (2001) Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res 11:1441–1452
22. Botstein D, White RL, Skolnick M, Davis RW (1980) Construction of a genetic linkage map in man using restriction fragment length polymorphism. Am J Hum Genet 32:314–331
23. Odeny DA, Jayashree B, Ferguson M, Hoisington D, Crouch J, Gebhardt C (2007) Development, characterization and utilization of microsatellite markers in pigeonpea. Plant Breed 126:130–136
24. Saxena RK, Prathima C, Saxena K, Hoisington DA, Singh NK, Varshney RK (2010) Novel SSR markers for polymorphism detection in pigeonpea (Cajanus spp.). Plant Breed 129:142–148
25. Varshney RK, Graner A, Sorrells E (2005) Genic microsatellite markers in plants: features and applications. Trends Biotechnol 23:48–55
26. Burns MJ, Edwards KJ, Newbury HJ, Ford-Lloyd BV, Baggott CD (2001) Development of simple sequence repeat (SSR) markers for the assessment of gene flow and genetic diversity in pigeonpea (Cajanus cajan). Mol Ecol Notes 1:283–285
27. Odeny DA, Jayashree B, Gebhardt C, Crouch J (2009) New microsatellite markers for pigeonpea (Cajanus cajan (L.) Millsp.). BMC Res Notes 2:35
28. Singh NK, Gupta DK, Jayaswal PK et al (2011) The first draft of the pigeonpea genome sequence. J Plant Biochem Biotechnol 21:98–112
29. Asif M, Rahman MU, Zafar Y (2006) Genotyping analysis of six maize (Zea mays L.) hybrid using DNA fingerprinting technology. Pak J Bot 38:1425–1430
30. Ali MA, Seyal MT, Awan SI, Niaz S, Ali S, Abbas A (2008) Hybrid authentication in upland cotton through RAPD analysis. Aust J Crop Sci 2:141–149