메뉴 건너뛰기




Volumn 5, Issue NOV, 2014, Pages

Natural microbial communities supporting the transfer of the IncP-1β plasmid pB10 exhibit a higher initial content of plasmids from the same incompatibility group

Author keywords

Community permissiveness; IncP 1; pB10; Plasmid transfer; Superinfection immunity

Indexed keywords

BACTERIAL RNA; RNA 16S;

EID: 84920571504     PISSN: None     EISSN: 1664302X     Source Type: Journal    
DOI: 10.3389/fmicb.2014.00637     Document Type: Article
Times cited : (13)

References (36)
  • 1
    • 84903823194 scopus 로고    scopus 로고
    • Demonstrating plasmid-based horizontal gene transfer in complex environmental matrices: a practical approach for a critical review
    • Bellanger, X., Guilloteau, H., Bonot, S., and Merlin, C. (2014). Demonstrating plasmid-based horizontal gene transfer in complex environmental matrices: a practical approach for a critical review. Sci. Total Environ. 493, 872-882. doi: 10.1016/j.scitotenv.2014.06.070
    • (2014) Sci. Total Environ. , vol.493 , pp. 872-882
    • Bellanger, X.1    Guilloteau, H.2    Bonot, S.3    Merlin, C.4
  • 2
    • 77955553975 scopus 로고    scopus 로고
    • Improving the recovery of qPCR-grade DNA from sludge and sediment
    • Bonot, S., Courtois, S., Block, J.-C., and Merlin, C. (2010). Improving the recovery of qPCR-grade DNA from sludge and sediment. Appl. Microbiol. Biotechnol. 87, 2303-2311. doi: 10.1007/s00253-010-2686-0
    • (2010) Appl. Microbiol. Biotechnol. , vol.87 , pp. 2303-2311
    • Bonot, S.1    Courtois, S.2    Block, J.-C.3    Merlin, C.4
  • 3
    • 76149123916 scopus 로고    scopus 로고
    • Monitoring the dissemination of the broad-host-range plasmid pB10 in sediment microcosms by quantitative PCR
    • Bonot, S., and Merlin, C. (2010). Monitoring the dissemination of the broad-host-range plasmid pB10 in sediment microcosms by quantitative PCR. Appl. Environ. Microbiol. 76, 378-382. doi: 10.1128/AEM.01125-09
    • (2010) Appl. Environ. Microbiol. , vol.76 , pp. 378-382
    • Bonot, S.1    Merlin, C.2
  • 4
    • 64149097786 scopus 로고    scopus 로고
    • The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments
    • Bustin, S. A., Benes, V., Garson, J. A., Hellemans, J., Huggett, J., Kubista, M.,et al. (2009). The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. Clin. Chem. 55, 611-622. doi: 10.1373/clinchem.2008.112797
    • (2009) Clin. Chem. , vol.55 , pp. 611-622
    • Bustin, S.A.1    Benes, V.2    Garson, J.A.3    Hellemans, J.4    Huggett, J.5    Kubista, M.6
  • 5
    • 70349410312 scopus 로고    scopus 로고
    • Influence of vegetation on the in situ bacterial community and polycyclic aromatic hydrocarbon (PAH) degraders in aged PAH-contaminated or thermal-desorption-treated soil
    • Cébron, A., Beguiristain, T., Faure, P., Norini, M. P., Masfaraud, J. F., and Leyval, C. (2009). Influence of vegetation on the in situ bacterial community and polycyclic aromatic hydrocarbon (PAH) degraders in aged PAH-contaminated or thermal-desorption-treated soil. Appl. Environ. Microbiol. 75, 6322-6330. doi: 10.1128/AEM.02862-2868
    • (2009) Appl. Environ. Microbiol. , vol.75 , pp. 6322-6330
    • Cébron, A.1    Beguiristain, T.2    Faure, P.3    Norini, M.P.4    Masfaraud, J.F.5    Leyval, C.6
  • 6
    • 79952088555 scopus 로고    scopus 로고
    • Root exudates modify bacterial diversity of phenanthrene degraders in PAH-polluted soil but not phenanthrene degradation rates
    • Cébron, A., Louvel, B., Faure, P., France-Lanord, C., Chen, Y., Murrell, J. C.,et al. (2011). Root exudates modify bacterial diversity of phenanthrene degraders in PAH-polluted soil but not phenanthrene degradation rates. Environ. Microbiol. 13, 722-736. doi: 10.1111/j.1462-2920.2010.02376.x
    • (2011) Environ. Microbiol. , vol.13 , pp. 722-736
    • Cébron, A.1    Louvel, B.2    Faure, P.3    France-Lanord, C.4    Chen, Y.5    Murrell, J.C.6
  • 7
    • 0029284013 scopus 로고
    • Vicious circles: looking back on resistance plasmids
    • Davies, J. (1995). Vicious circles: looking back on resistance plasmids. Genetics 139, 1465-1468.
    • (1995) Genetics , vol.139 , pp. 1465-1468
    • Davies, J.1
  • 8
    • 34447097735 scopus 로고    scopus 로고
    • Microbes have the last word A drastic re-evaluation of antimicrobial treatment is needed to overcome the threat of antibiotic-resistant bacteria
    • Davies, J. (2007). Microbes have the last word. A drastic re-evaluation of antimicrobial treatment is needed to overcome the threat of antibiotic-resistant bacteria. EMBO Rep. 8, 616-621. doi: 10.1038/sj.embor.7401022
    • (2007) EMBO Rep. , vol.8 , pp. 616-621
    • Davies, J.1
  • 9
    • 77957980707 scopus 로고    scopus 로고
    • Origins and evolution of antibiotic resistance
    • Davies, J., and Davies, D. (2010). Origins and evolution of antibiotic resistance. Microbiol. Mol. Biol. Rev. 74, 417-433. doi: 10.1128/MMBR.00016-10
    • (2010) Microbiol. Mol. Biol. Rev. , vol.74 , pp. 417-433
    • Davies, J.1    Davies, D.2
  • 10
    • 84870955560 scopus 로고    scopus 로고
    • The ability of soil bacteria to receive the conjugative IncP1 plasmid, pKJK10, is different in a mixed community compared to single strains
    • de la Cruz-Perera, C. I., Ren, D., Blanchet, M., Dendooven, L., Marsch, R., Sørensen, S. J.,et al. (2013). The ability of soil bacteria to receive the conjugative IncP1 plasmid, pKJK10, is different in a mixed community compared to single strains. FEMS Microbiol. Lett. 338, 95-100. doi: 10.1111/1574-6968.12036
    • (2013) FEMS Microbiol. Lett. , vol.338 , pp. 95-100
    • de la Cruz-Perera, C.I.1    Ren, D.2    Blanchet, M.3    Dendooven, L.4    Marsch, R.5    Sørensen, S.J.6
  • 11
    • 84886302893 scopus 로고    scopus 로고
    • Using the Student's t-test with extremely small sample sizes
    • De Winter, J. C. F. (2013). Using the Student's t-test with extremely small sample sizes. Pract. Assess. Res. Eval. 18, 2.
    • (2013) Pract. Assess. Res. Eval. , vol.18 , pp. 2
    • De Winter, J.C.F.1
  • 12
    • 44649093274 scopus 로고    scopus 로고
    • Why is entry exclusion an essential feature of conjugative plasmids?
    • Garcillán-Barcia, M. P., and de la Cruz, F. (2008). Why is entry exclusion an essential feature of conjugative plasmids? Plasmid 60, 1-18. doi: 10.1016/j.plasmid.2008.03.002
    • (2008) Plasmid , vol.60 , pp. 1-18
    • Garcillán-Barcia, M.P.1    de la Cruz, F.2
  • 13
    • 0030014510 scopus 로고    scopus 로고
    • Detection and characterization of broad-host-range plasmids in environmental bacteria by PCR
    • Götz, A., Pukall, R., Smit, E., Tietze, E., Prager, R., Tschäpe, H.,et al. (1996). Detection and characterization of broad-host-range plasmids in environmental bacteria by PCR. Appl. Environ. Microbiol. 62, 2621-2628.
    • (1996) Appl. Environ. Microbiol. , vol.62 , pp. 2621-2628
    • Götz, A.1    Pukall, R.2    Smit, E.3    Tietze, E.4    Prager, R.5    Tschäpe, H.6
  • 14
    • 84861666352 scopus 로고    scopus 로고
    • Plasmid-mediated horizontal gene transfer is a coevolutionary process
    • Harrison, E., and Brockhurst, M. A. (2012). Plasmid-mediated horizontal gene transfer is a coevolutionary process. Trends Microbiol. 20, 262-267. doi: 10.1016/j.tim.2012.04.003
    • (2012) Trends Microbiol. , vol.20 , pp. 262-267
    • Harrison, E.1    Brockhurst, M.A.2
  • 15
    • 49249097625 scopus 로고    scopus 로고
    • Patchy distribution of flexible genetic elements in bacterial populations mediates robustness to environmental uncertainty
    • Heuer, H., Abdo, Z., and Smalla, K. (2008). Patchy distribution of flexible genetic elements in bacterial populations mediates robustness to environmental uncertainty. FEMS Microbiol. Ecol. 65, 361-371. doi: 10.1111/j.1574-6941.2008.00539.x
    • (2008) FEMS Microbiol. Ecol. , vol.65 , pp. 361-371
    • Heuer, H.1    Abdo, Z.2    Smalla, K.3
  • 16
    • 63849172530 scopus 로고    scopus 로고
    • Spreading antibiotic resistance through spread manure: characteristics of a novel plasmid type with low %G+C content
    • Heuer, H., Kopmann, C., Binh, C. T., Top, E. M., and Smalla, K. (2009). Spreading antibiotic resistance through spread manure: characteristics of a novel plasmid type with low %G+C content. Environ. Microbiol. 11, 937-949. doi: 10.1111/j.1462-2920.2008.01819
    • (2009) Environ. Microbiol. , vol.11 , pp. 937-949
    • Heuer, H.1    Kopmann, C.2    Binh, C.T.3    Top, E.M.4    Smalla, K.5
  • 17
    • 74949117633 scopus 로고    scopus 로고
    • Evidence of increasing antibiotic resistance gene abundances in archived soils since 1940
    • Knapp, C. W., Dolfing, J., Ehlert, P. A., and Graham, D. W. (2010). Evidence of increasing antibiotic resistance gene abundances in archived soils since 1940. Environ. Sci. Technol. 44, 580-587. doi: 10.1021/es901221x
    • (2010) Environ. Sci. Technol. , vol.44 , pp. 580-587
    • Knapp, C.W.1    Dolfing, J.2    Ehlert, P.A.3    Graham, D.W.4
  • 18
    • 79951882096 scopus 로고    scopus 로고
    • Pyrosequencing of antibiotic-contaminated river sediments reveals high levels of resistance and gene transfer elements
    • Kristiansson, E., Fick, J., Janzon, A., Grabic, R., Rutgersson, C., Weijdegård, B.,et al. (2011). Pyrosequencing of antibiotic-contaminated river sediments reveals high levels of resistance and gene transfer elements. PLoS ONE 6:e17038. doi: 10.1371/journal.pone.0017038
    • (2011) PLoS ONE , vol.6
    • Kristiansson, E.1    Fick, J.2    Janzon, A.3    Grabic, R.4    Rutgersson, C.5    Weijdegård, B.6
  • 19
    • 0032228069 scopus 로고    scopus 로고
    • Bacterial evolution and the cost of antibiotic resistance
    • Lenski, R. E. (1998). Bacterial evolution and the cost of antibiotic resistance. Int. Microbiol. 1, 265-270.
    • (1998) Int. Microbiol. , vol.1 , pp. 265-270
    • Lenski, R.E.1
  • 20
    • 2942665668 scopus 로고    scopus 로고
    • Adaptation to the deleterious effects of antimicrobial drug resistance mutations by compensatory evolution
    • Maisnier-Patin, S., and Andersson, D. I. (2004). Adaptation to the deleterious effects of antimicrobial drug resistance mutations by compensatory evolution. Res. Microbiol. 155, 360-369. doi: 10.1016/j.resmic.2004.01.019
    • (2004) Res. Microbiol. , vol.155 , pp. 360-369
    • Maisnier-Patin, S.1    Andersson, D.I.2
  • 21
    • 79954630644 scopus 로고    scopus 로고
    • Persistence and dissemination of the multiple-antibiotic-resistance plasmid pB10 in the microbial communities of wastewater sludge microcosms
    • Merlin, C., Bonot, S., Courtois, S., and Block, J.-C. (2011). Persistence and dissemination of the multiple-antibiotic-resistance plasmid pB10 in the microbial communities of wastewater sludge microcosms. Water Res. 45, 2897-2905. doi: 10.1016/j.watres.2011.03.002
    • (2011) Water Res. , vol.45 , pp. 2897-2905
    • Merlin, C.1    Bonot, S.2    Courtois, S.3    Block, J.-C.4
  • 22
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer, G., de Waal, E. C., and Uitterlinden, A. G. (1993). Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 59, 695-700.
    • (1993) Appl. Environ. Microbiol. , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 23
    • 84895138159 scopus 로고    scopus 로고
    • Metagenomic frameworks for monitoring antibiotic resistance in aquatic environments
    • Port, J. A., Cullen, A. C., Wallace, J. C., Smith, M. N., and Faustman, E. M. (2014). Metagenomic frameworks for monitoring antibiotic resistance in aquatic environments. Environ. Health Perspect. 122, 222-228. doi: 10.1289/ehp.1307009
    • (2014) Environ. Health Perspect. , vol.122 , pp. 222-228
    • Port, J.A.1    Cullen, A.C.2    Wallace, J.C.3    Smith, M.N.4    Faustman, E.M.5
  • 24
    • 0030741056 scopus 로고    scopus 로고
    • An improved method for purifying DNA from soil for polymerase chain reaction amplification and molecular ecology applications
    • Porteous, L. A., Seidler, R. J., and Watrud, L. S. (1997). An improved method for purifying DNA from soil for polymerase chain reaction amplification and molecular ecology applications. Mol. Ecol. 6, 787-791. doi: 10.1046/j.1365-294X.1997.00241.x
    • (1997) Mol. Ecol. , vol.6 , pp. 787-791
    • Porteous, L.A.1    Seidler, R.J.2    Watrud, L.S.3
  • 25
    • 84873433431 scopus 로고    scopus 로고
    • Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment: a review
    • Rizzo, L., Manaia, C., Merlin, C., Schwartz, T., Dagot, C., Ploy, M. C.,et al. (2013). Urban wastewater treatment plants as hotspots for antibiotic resistant bacteria and genes spread into the environment: a review. Sci. Total Environ. 447, 345-360. doi: 10.1016/j.scitotenv.2013.01.032
    • (2013) Sci. Total Environ. , vol.447 , pp. 345-360
    • Rizzo, L.1    Manaia, C.2    Merlin, C.3    Schwartz, T.4    Dagot, C.5    Ploy, M.C.6
  • 26
    • 17944402895 scopus 로고    scopus 로고
    • The 64 508 bp IncP-1ß antibiotic multiresistance plasmid pB10 isolated from a waste-water treatment plant provides evidence for recombination between members of different branches of the IncP-1ß group
    • Schlüter, A., Heuer, H., Szczepanowski, R., Forney, L. J., Thomas, C. M., Pühler, A.,et al. (2003). The 64 508 bp IncP-1ß antibiotic multiresistance plasmid pB10 isolated from a waste-water treatment plant provides evidence for recombination between members of different branches of the IncP-1ß group. Microbiology 149, 3139-3153. doi: 10.1099/mic.0.26570-26570
    • (2003) Microbiology , vol.149 , pp. 3139-3153
    • Schlüter, A.1    Heuer, H.2    Szczepanowski, R.3    Forney, L.J.4    Thomas, C.M.5    Pühler, A.6
  • 27
    • 84864374018 scopus 로고    scopus 로고
    • Integron involvement in environmental spread of antibiotic resistance
    • Stalder, T., Barraud, O., Casellas, M., Dagot, C., and Ploy, M. C. (2012). Integron involvement in environmental spread of antibiotic resistance. Front. Microbiol. 3:119. doi: 10.3389/fmicb.2012.00119
    • (2012) Front. Microbiol. , vol.3 , pp. 119
    • Stalder, T.1    Barraud, O.2    Casellas, M.3    Dagot, C.4    Ploy, M.C.5
  • 28
    • 78049418891 scopus 로고    scopus 로고
    • Predicting plasmid promiscuity based on genomic signature
    • Suzuki, H., Yano, H., Brown, C. J., and Top, E. M. (2010). Predicting plasmid promiscuity based on genomic signature. J. Bacteriol. 192, 6045-6055. doi: 10.1128/JB.00277-210
    • (2010) J. Bacteriol. , vol.192 , pp. 6045-6055
    • Suzuki, H.1    Yano, H.2    Brown, C.J.3    Top, E.M.4
  • 29
    • 0001878986 scopus 로고    scopus 로고
    • ADE-4: a multivariate analysis and graphical display software
    • Thioulouse, J., Chessel, D., Dolédec, S., and Olivier, J. M. (1997). ADE-4: a multivariate analysis and graphical display software. Stat. Comput. 7, 75-83. doi: 10.1023/A:1018513530268
    • (1997) Stat. Comput. , vol.7 , pp. 75-83
    • Thioulouse, J.1    Chessel, D.2    Dolédec, S.3    Olivier, J.M.4
  • 30
    • 0025306679 scopus 로고
    • Gene escape model: transfer of heavy metal resistance genes from Escherichia coli to Alcaligenes eutrophus on agar plates and in soil samples
    • Top, E., Mergeay, M., Springael, D., and Verstraete, W. (1990). Gene escape model: transfer of heavy metal resistance genes from Escherichia coli to Alcaligenes eutrophus on agar plates and in soil samples. Appl. Environ. Microbiol. 56, 2471-2479.
    • (1990) Appl. Environ. Microbiol. , vol.56 , pp. 2471-2479
    • Top, E.1    Mergeay, M.2    Springael, D.3    Verstraete, W.4
  • 31
    • 84855906559 scopus 로고    scopus 로고
    • Prokaryote genome fluidity: toward a system approach of the mobilome
    • eds J van Helden, A. Toussaint, and D. Thieffry (New York, NY: Humana Press).
    • Toussaint, A., and Chandler, M. (2012). "Prokaryote genome fluidity: toward a system approach of the mobilome," in Bacterial Molecular Networks: Methods and Protocols, Methods in Molecular Biology, eds J. van Helden, A. Toussaint, and D. Thieffry (New York, NY: Humana Press). 804, 57-80. doi: 10.1007/978-1-61779-361-5_4
    • (2012) in Bacterial Molecular Networks: Methods and Protocols, Methods in Molecular Biology , vol.804 , pp. 57-80
    • Toussaint, A.1    Chandler, M.2
  • 32
    • 0021740097 scopus 로고
    • A mathematical model for the co-existence of incompatible, conjugative plasmids in individual bacteria of a bacterial population
    • van der Hoeven, N. (1984). A mathematical model for the co-existence of incompatible, conjugative plasmids in individual bacteria of a bacterial population. J. Theor. Biol. 110, 411-423. doi: 10.1016/S0022-5193(84)80183-6
    • (1984) J. Theor. Biol. , vol.110 , pp. 411-423
    • van der Hoeven, N.1
  • 33
    • 0022502770 scopus 로고
    • Coexistence of incompatible plasmids in a bacterial population living under a feast and famine regime
    • van der Hoeven, N. (1986). Coexistence of incompatible plasmids in a bacterial population living under a feast and famine regime. J. Math. Biol. 24, 313-325. doi: 10.1007/BF00275640
    • (1986) J. Math. Biol. , vol.24 , pp. 313-325
    • van der Hoeven, N.1
  • 34
    • 84885040181 scopus 로고    scopus 로고
    • Metagenomic profiling of antibiotic resistance genes and mobile genetic elements in a tannery wastewater treatment plant
    • Wang, Z., Zhang, X. X., Huang, K., Miao, Y., Shi, P., Liu, B.,et al. (2013). Metagenomic profiling of antibiotic resistance genes and mobile genetic elements in a tannery wastewater treatment plant. PLoS ONE 8:e76079. doi: 10.1371/journal.pone.0076079
    • (2013) PLoS ONE , vol.8
    • Wang, Z.1    Zhang, X.X.2    Huang, K.3    Miao, Y.4    Shi, P.5    Liu, B.6
  • 35
    • 79960961566 scopus 로고    scopus 로고
    • Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches
    • Wiedenbeck, J., and Cohan, F. M. (2011). Origins of bacterial diversity through horizontal genetic transfer and adaptation to new ecological niches. FEMS Microbiol. Rev. 35, 957-976. doi: 10.1111/j.1574-6976.2011.00292.x
    • (2011) FEMS Microbiol. Rev. , vol.35 , pp. 957-976
    • Wiedenbeck, J.1    Cohan, F.M.2
  • 36
    • 77957820588 scopus 로고    scopus 로고
    • Antibiotic resistance in the environment: a link to the clinic?
    • Wright, G. D. (2010). Antibiotic resistance in the environment: a link to the clinic? Curr. Opin. Microbiol. 13, 589-594. doi: 10.1016/j.mib.2010.08.005
    • (2010) Curr Opin. Microbiol. , vol.13 , pp. 589-594
    • Wright, G.D.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.