Molecular characterization of a new mosaic Simian Immunodeficiency Virus in a naturally infected tantalus monkey (Chlorocebus tantalus) from Cameroon: A challenge to the virus-host co-evolution of SIVagm in African green monkeys

Infection, Genetics and Evolution

Volumn 30, Issue , 2015, Pages 65-73

  Ayouba, Ahidjo ^a   Njouom, Richard ^b   Chia, Julius Ebua ^c   Ahuka Mundeke, Steve ^a   Kfutwah, Anfumbom ^b   Ngole, Eitel Mpoudi ^c   Nerrienet, Eric ^b   Delaporte, Eric ^a   Peeters, Martine ^a,d  

^a INSTITUT DE RECHERCHE POUR LE DÉVELOPPEMENT   (France)

^b CENTRE PASTEUR DU CAMEROUN   (Cameroon)

^c Institut de Recherche pour le Developpement Cameroon   (Cameroon)

^d LIRMM   (France)

Author keywords

African green monkeys; Cameroon; Phylogeny; SIV

Indexed keywords

ANIMAL EXPERIMENT; ARTICLE; CAMEROON; CHLOROCEBUS; CHLOROCEBUS TANTALUS; CONTROLLED STUDY; ENVELOPE GENE; FEMALE; GAG GENE; GENOME; NEF GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; SIMIAN ACQUIRED IMMUNODEFICIENCY SYNDROME; SIMIAN IMMUNODEFICIENCY VIRUS; STRUCTURAL GENE; VIRUS GENE; ANIMAL; BLOOD; CERCOPITHECIDAE; CHLOROCEBUS AETHIOPS; CLASSIFICATION; GENETICS; HOST PATHOGEN INTERACTION; MOLECULAR GENETICS; PHYLOGENY; VIROLOGY;

CERCOPITHECUS; CERCOPITHECUS AETHIOPS; CERCOPITHECUS SABAEUS; CERCOPITHECUS TANTALUS; PRIMATES; SIMIAN IMMUNODEFICIENCY VIRUS;

VIRUS DNA;

ANIMALS; CAMEROON; CERCOPITHECIDAE; CERCOPITHECUS AETHIOPS; DNA, VIRAL; FEMALE; HOST-PATHOGEN INTERACTIONS; MOLECULAR SEQUENCE DATA; PHYLOGENY; SIMIAN ACQUIRED IMMUNODEFICIENCY SYNDROME; SIMIAN IMMUNODEFICIENCY VIRUS;

EID: 84920287808     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2014.12.005     Document Type: Article

References (29)

1. Accola M.A., Bukovsky A.A., Jones M.S., Gottlinger H.G. A conserved dileucine-containing motif in p6(gag) governs the particle association of Vpx and Vpr of simian immunodeficiency viruses SIV(mac) and SIV(agm). J. Virol. 1999, 73:9992-9999.
2. Aghokeng A.F., Ayouba A., Ahuka S., Liegoies F., Mbala P., Muyembe J.J., Mpoudi-Ngole E., Delaporte E., Peeters M. Genetic diversity of simian lentivirus in wild De Brazza's monkeys (Cercopithecus neglectus) in Equatorial Africa. J. Gen. Virol. 2010, 91:1810-1816.
3. Ahuka-Mundeke S., Liegeois F., Ayouba A., Foupouapouognini Y., Nerrienet E., Delaporte E., Peeters M. Full-length genome sequence of a simian immunodeficiency virus (SIV) infecting a captive agile mangabey (Cercocebus agilis) is closely related to SIVrcm infecting wild red-capped mangabeys (Cercocebus torquatus) in Cameroon. J. Gen. Virol. 2010, 91:2959-2964.
4. Ahuka-Mundeke S., Ayouba A., Mbala-Kingebeni P., Liegeois F., Esteban A., Lunguya-Metila O., Demba D., Bilulu G., Mbenzo-Abokome V., Inogwabini B.I., Muyembe-Tamfum J.J., Delaporte E., Peeters M. Novel multiplexed HIV/simian immunodeficiency virus antibody detection assay. Emerg. Infect. Dis. 2011, 17:2277-2286.
5. Allan J.S., Short M., Taylor M.E., Su S., Hirsch V.M., Johnson P.R., Shaw G.M., Hahn B.H. Species-specific diversity among simian immunodeficiency viruses from African-green monkeys. J. Virol. 1991, 65:2816-2828.
6. Clewley J.P., Lewis J.C., Brown D.W., Gadsby E.L. A novel simian immunodeficiency virus (SIVdrl) pol sequence from the drill monkey, Mandrillus leucophaeus. J. Virol. 1998, 72:10305-10309.
7. Groves C. Primate Taxonomy 2001, Smithsonian Institution Press, Washington and London.
8. Guindon S., Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Syst. Biol. 2003, 52:696-704.
9. Haus T., Akom E., Agwanda B., Hofreiter M., Roos C., Zinner D. Mitochondrial diversity and distribution of African green monkeys (Chlorocebus Gray, 1870). Am. J. Primatol. 2013, 75:350-360.
10. Haus T., Roos C., Zinner D. Discordance between spatial distributions of Y-chromosomal and mitochondrial haplotypes in African green monkeys (spp.): a result of introgressive hybridization or cryptic diversity?. Int. J. Primatol. 2013, 34:986-999.
11. Hendry R.M., Wells M.A., Phelan M.A., Schneider A.L., Epstein J.S., Quinnan G.V. Antibodies to simian immunodeficiency virus in African green monkeys in Africa in 1957-62. Lancet 1986, 2:455.
12. Hirsch V., Riedel N., Kornfeld H., Kanki P.J., Essex M., Mullins J.I. Cross-reactivity to human T-lymphotropic virus type-III/lymphadenopathy-associated virus and molecular-cloning of simian T-cell lymphotropic virus type-III from African-green monkeys. Proc. Natl. Acad. Sci. U.S.A. 1986, 83:9754-9758.
13. Hirsch V.M., Mcgann C., Dapolito G., Goldstein S., Ogenodoi A., Biryawaho B., Lakwo T., Johnson P.R. Identification of a new subgroup of SIVagm in tantalus monkeys. Virology 1993, 197:426-430.
14. Jasinska A.J., Schmitt C.A., Service S.K., Cantor R.M., Dewar K., Jentsch J.D., Kaplan J.R., Turner T.R., Warren W.C., Weinstock G.M., Woods R.P., Freimer N.B. Systems biology of the vervet monkey. ILAR J. 2013, 54:122-143.
15. Jin M.J., Hui H.X., Robertson D.L., Muller M.C., Barresinoussi F., Hirsch V.M., Allan J.S., Shaw G.M., Sharp P.M., Hahn B.H. Mosaic genome structure of simian immunodeficiency virus from West-African green monkeys. EMBO J. 1994, 13:2935-2947.
16. Keele B.F., Van Heuverswyn F., Li Y., Bailes E., Takehisa J., Santiago M.L., Bibollet-Ruche F., Chen Y., Wain L.V., Liegeois F., Loul S., Ngole E.M., Bienvenue Y., Delaporte E., Brookfield J.F., Sharp P.M., Shaw G.M., Peeters M., Hahn B.H. Chimpanzee reservoirs of pandemic and non-pandemic HIV-1. Science 2006, 313:523-526.
17. Liegeois F., Lafay B., Formenty P., Locatelli S., Courgnaud V., Delaporte E., Peeters M. Full-length genome characterization of a novel simian immunodeficiency virus lineage (SIVolc) from olive colobus (Procolobus verus) and new SIVwrcPbb strains from Western red colobus (Piliocolobus badius badius) from the tai forest in Ivory Coast. J. Virol. 2009, 83:428-439.
18. Liegeois F., Schmidt F., Boue V., Butel C., Mouacha F., Ngari P., Ondo B.M., Leroy E., Heeney J.L., Delaporte E., Peeters M., Rouet F. Full-length genome analyses of two new simian immunodeficiency virus (SIV) strains from mustached monkeys (C. Cephus) in Gabon illustrate a complex evolutionary history among the SIVmus/mon/gsn lineage. Viruses 2014, 6:2880-2898.
19. Locatelli S., Peeters M. Cross-species transmission of simian retroviruses: how and why they could lead to the emergence of new diseases in the human population. AIDS 2012, 26:659-673.
20. Lole K.S., Bollinger R.C., Paranjape R.S., Gadkari D., Kulkarni S.S., Novak N.G., Ingersoll R., Sheppard H.W., Ray S.C. Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J. Virol. 1999, 73:152-160.
21. Lowenstine L.J., Pedersen N.C., Higgins J., Pallis K.C., Uyeda A., Marx P., Lerche N.W., Munn R.J., Gardner M.B. Seroepidemiologic survey of captive old-world primates for antibodies to human and simian retroviruses, and isolation of a lentivirus from sooty mangabeys (Cercocebus atys). Int. J. Cancer 1986, 38:563-574.
22. Ma D., Jasinska A., Kristoff J., Grobler J.P., Turner T., Jung Y., Schmitt C., Raehtz K., Feyertag F., Martinez Sosa N., Wijewardana V., Burke D.S., Robertson D.L., Tracy R., Pandrea I., Freimer N., Apetrei C. SIVagm infection in wild African green monkeys from South Africa: epidemiology, natural history, and evolutionary considerations. PLoS Pathog. 2013, 9:e1003011.
23. Ma D., Jasinska A.J., Feyertag F., Wijewardana V., Kristoff J., He T., Raehtz K., Schmitt C.A., Jung Y., Cramer J.D., Dione M., Antonio M., Tracy R., Turner T., Robertson D.L., Pandrea I., Freimer N., Apetrei C. Factors associated with simian immunodeficiency virus transmission in a natural African nonhuman primate host in the wild. J. Virol. 2014, 88:5687-5705.
24. Martin D.P., Lemey P., Lott M., Moulton V., Posada D., Lefeuvre P. RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics (Oxford, England) 2010, 26:2462-2463.
25. Ohta Y., Masuda T., Tsujimoto H., Ishikawa K., Kodama T., Morikawa S., Nakai M., Honjo S., Hayami M. Isolation of simian immunodeficiency virus from African-green monkeys and seroepidemiologic survey of the virus in various non-human primates. Int. J. Cancer 1988, 41:115-122.
26. Peeters M., Courgnaud V., Abela B., Auzel P., Pourrut X., Bibollet-Ruche F., Loul S., Liegeois F., Butel C., Koulagna D., Mpoudi-Ngole E., Shaw G.M., Hahn B.H., Delaporte E. Risk to human health from a plethora of simian immunodeficiency viruses in primate bushmeat. Emerg. Infect. Dis. 2002, 8:451-457.
27. Ronquist F., Huelsenbeck J.P. MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics (Oxford, England) 2003, 19:1572-1574.
28. VandeWoude S., Apetrei C. Going wild: lessons from naturally occurring T-lymphotropic lentiviruses. Clin. Microbiol. Rev. 2006, 19:728-762.
29. Wertheim J.O., Worobey M. A challenge to the ancient origin of SIVagm based on African green monkey mitochondrial genomes. PLoS Pathog. 2007, 3:866-873.