Diversity and recombination of human parechovirus in children with acute gastroenteritis in Guangzhou, China

Journal of Medical Virology

Volumn 87, Issue 2, 2015, Pages 296-302

  Chen, Hui fang ^a,b   Zheng, Xue yan ^a   Chen, Xia ming ^b   Shi, Ting li ^a   Yao, Yue xian ^a   Yuan, Qing ^b   Chen, Qing ^a   Yu, Shou yi ^a  

^a SOUTHERN MEDICAL UNIVERSITY   (China)

^b Songgang Health Inspection and Prevention Institute   (China)

Author keywords

Children; Gastroenteritis; Genotyping; Parechovirus; Recombination

Indexed keywords

ACUTE GASTROENTERITIS; ADENOVIRIDAE; AGAR GEL ELECTROPHORESIS; AGE DISTRIBUTION; ARTICLE; ASTROVIRUS; CHILDHOOD DISEASE; CHINA; CONTROLLED STUDY; FEMALE; GENETIC RECOMBINATION; HUMAN; HUMAN PARECHOVIRUS; HUMAN PARECHOVIRUS 1; HUMAN PARECHOVIRUS 14; HUMAN PARECHOVIRUS 3; HUMAN PARECHOVIRUS 4; HUMAN PARECHOVIRUS 5; HUMAN PARECHOVIRUS 6; HUMAN PARECHOVIRUS 8; INFANT; MAJOR CLINICAL STUDY; MALE; MOLECULAR EPIDEMIOLOGY; NOROVIRUS; PARECHOVIRUS; PATHOGENESIS; PHYLOGENETIC TREE; ROTAVIRUS; SAPOVIRUS; SEX RATIO; STRUCTURAL GENE; VIRUS DETECTION; VIRUS GENOME; VIRUS STRAIN; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; FECES; GASTROENTERITIS; GENETIC VARIABILITY; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; PHYLOGENY; PICORNAVIRUS INFECTION; PRESCHOOL CHILD; SEQUENCE HOMOLOGY; VIROLOGY;

HUMAN PARECHOVIRUS; PARECHOVIRUS; PICORNAVIRIDAE;

VIRUS RNA;

CHILD, PRESCHOOL; CHINA; CLUSTER ANALYSIS; FECES; FEMALE; GASTROENTERITIS; GENETIC VARIATION; HUMANS; INFANT; MALE; MOLECULAR SEQUENCE DATA; PARECHOVIRUS; PHYLOGENY; PICORNAVIRIDAE INFECTIONS; RECOMBINATION, GENETIC; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

EID: 84919874612     PISSN: 01466615     EISSN: 10969071     Source Type: Journal    
DOI: 10.1002/jmv.24030     Document Type: Article

References (38)

1. Abed Y, Boivin G. 2006. Human parechovirus infections in Canada. Emerg Infect Dis 12:969-975.
2. Al-Sunaidi M, Williams CH, Hughes PJ, Schnurr DP, Stanway G. 2007. Analysis of a new human parechovirus allows the definition of parechovirus types and the identification of RNA structural domains. J Virol 81:1013-1021.
3. Benschop K, Molenkamp R, van der Ham A, Wolthers K, Beld M. 2008. Rapid detection of human parechoviruses in clinical samples by real-time PCR. J Clin Virol 41:69-74.
4. Benschop K, Thomas X, Serpenti C, Molenkamp R, Wolthers K. 2008. High prevalence of human Parechovirus (HPeV) genotypes in the Amsterdam region and identification of specific HPeV variants by direct genotyping of stool samples. J Clin Microbiol 46:3965-3970.
5. Boivin G, Abed Y, Boucher FD. 2005. Human parechovirus 3 and neonatal infections. Emerg Infect Dis 11:103-105.
6. Boxman IL, Tilburg JJ, Te LN, Vennema H, Jonker K, de Boer E, Koopmans M. 2006. Detection of noroviruses in shellfish in the Netherlands. Int J Food Microbiol 108:391-396.
7. Calvert J, Chieochansin T, Benschop KS, McWilliam LE, Drexler JF, Grywna K, Da CRHJ, Drosten C, Harvala H, Poovorawan Y, Wolthers KC, Simmonds P. 2010. Recombination dynamics of human parechoviruses: investigation of type-specific differences in frequency and epidemiological correlates. J Gen Virol 91:1229-1238.
8. Cao Y, Kong F, Zhou F, Xiao M, Wang Q, Duan Y, Kesson AM, McPhie K, Gilbert GL, Dwyer DE. 2011. Genotyping of human adenoviruses using a PCR-based reverse line blot hybridisation assay. Pathology 43:488-494.
9. Chieochansin T, Vichiwattana P, Korkong S, Theamboonlers A, Poovorawan Y. 2011. Molecular epidemiology, genome characterization, and recombination event of human parechovirus. Virology 421:159-166.
10. Drexler JF, Grywna K, Stocker A, Almeida PS, Medrado-Ribeiro TC, Eschbach-Bludau M, Petersen N, Da CH, Drosten C. 2009. Novel human parechovirus from Brazil. Emerg Infect Dis 15:310-313.
11. Gabbay YB, Linhares AC, Oliveira DS, Nakamura LS, Mascarenhas JD, Gusmao RH, Heinemann MB, Macedo O, Leite JP. 2007. First detection of a human astrovirus type 8 in a child with diarrhea in Belem, Brazil: comparison with other strains worldwide and identification of possible three lineages. Mem Inst Oswaldo Cruz 102:531-534.
12. Guo Y, Duan Z, Qian Y. 2013. Changes in human parechovirus profiles in hospitalized children with acute gastroenteritis after a three-year interval in Lanzhou, China. PLoS One 8:e68321.
13. Han TH, Kim CH, Park SH, Chung JY, Hwang ES. 2011. Detection of human parechoviruses in children with gastroenteritis in South Korea. Arch Virol 156:1471-1475.
14. Harvala H, Robertson I, McWilliam LE, Benschop K, Wolthers KC, Templeton K, Simmonds P. 2008. Epidemiology and clinical associations of human parechovirus respiratory infections. J Clin Microbiol 46:3446-3453.
15. Harvala H, Simmonds P. 2009. Human parechoviruses: biology, epidemiology and clinical significance. J Clin Virol 45:1-9.
16. Harvala H, Wolthers KC, Simmonds P. 2010. Parechoviruses in children: understanding a new infection. Curr Opin Infect Dis 23:224-230.
17. Ito M, Yamashita T, Tsuzuki H, Kabashima Y, Hasegawa A, Nagaya S, Kawaguchi M, Kobayashi S, Fujiura A, Sakae K, Minagawa H. 2010. Detection of human parechoviruses from clinical stool samples in Aichi, Japan. J Clin Microbiol 48:2683-2688.
18. Legay V, Chomel JJ, Fernandez E, Lina B, Aymard M, Khalfan S. 2002. Encephalomyelitis due to human parechovirus type 1. J Clin Virol 25:193-195.
19. Li L, Victoria J, Kapoor A, Naeem A, Shaukat S, Sharif S, Alam MM, Angez M, Zaidi SZ, Delwart E. 2009. Genomic characterization of novel human parechovirus type. Emerg Infect Dis 15:288-291.
20. Pajkrt D, Benschop KS, Westerhuis B, Molenkamp R, Spanjerberg L, Wolthers KC. 2009. Clinical characteristics of human parechoviruses 4-6 in fections in young children. Pediatr Infect Dis J 28:1008-1010.
21. Pham NT, Trinh QD, Khamrin P, Maneekarn N, Shimizu H, Okitsu S, Mizuguchi M, Ushijima H. 2010. Diversity of human parechoviruses isolated from stool samples collected from Thai children with acute gastroenteritis. J Clin Microbiol 48:115-119.
22. Pham NT, Takanashi S, Tran DN, Trinh QD, Abeysekera C, Abeygunawardene A, Khamrin P, Okitsu S, Shimizu H, Mizuguchi M, Ushijima H. 2011. Human parechovirus infection in children hospitalized with acute gastroenteritis in Sri Lanka. J Clin Microbiol 49:364-366.
23. Piralla A, Furione M, Rovida F, Marchi A, Stronati M, Gerna G, Baldanti F. 2012. Human parechovirus infections in patients admitted to hospital in Northern Italy, 2008-2010. J Med Virol 84:686-690.
24. Ren L, Gonzalez R, Xiao Y, Xu X, Chen L, Vernet G, Paranhos-Baccala G, Jin Q, Wang J. 2009. Saffold cardiovirus in children with acute gastroenteritis, Beijing, China. Emerg Infect Dis 15:1509-1511.
25. Sainato R, Flanagan R, Mahlen S, Fairchok M, Braun L. 2011. Severe human parechovirus sepsis beyond the neonatal period. J Clin Virol 51:73-74.
26. Stanway G, Hyypia T. 1999. Parechoviruses. J Virol 73:5249-5254.
27. Stanway G, Joki-Korpela P, Hyypia T. 2000. Human parechoviruses-biology and clinical significance. Rev Med Virol 10:57-69.
28. Stanway G, Kalkkinen N, Roivainen M, Ghazi F, Khan M, Smyth M, Meurman O, Hyypia T. 1994. Molecular and biological characteristics of echovirus 22, a representative of a new picornavirus group. J Virol 68:8232-8238.
29. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731-2739.
30. Tauriainen S, Oikarinen S, Taimen K, Laranne J, Sipila M, Lonnrot M, Ilonen J, Simell O, Knip M, Hyoty H. 2008. Temporal relationship between human parechovirus 1 infection and otitis media in young children. J Infect Dis 198:35-40.
31. Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680.
32. van der Sanden S, de Bruin E, Vennema H, Swanink C, Koopmans M, van der Avoort H. 2008. Prevalence of human parechovirus in the Netherlands in 2000 to 2007. J Clin Microbiol 46:2884-2889.
33. Watanabe K, Oie M, Higuchi M, Nishikawa M, Fujii M. 2007. Isolation and characterization of novel human parechovirus from clinical samples. Emerg Infect Dis 13:889-895.
34. Wigand R, Sabin AB. 1961. Properties of ECHO types 22, 23 and 24 viruses. Arch Gesamte Virusforsch 11:224-247.
35. Williams CH, Panayiotou M, Girling GD, Peard CI, Oikarinen S, Hyoty H, Stanway G. 2009. Evolution and conservation in human parechovirus genomes. J Gen Virol 90:1702-1712.
36. Yan H, Yagyu F, Okitsu S, Nishio O, Ushijima H. 2003. Detection of norovirus (GI, GII), Sapovirus and astrovirus in fecal samples using reverse transcription single-round multiplex PCR. J Virol Methods 114:37-44.
37. Zhang DL, Jin Y, Li DD, Cheng WX, Xu ZQ, Yu JM, Jin M, Yang SH, Zhang Q, Cui SX, Liu N, Duan ZJ. 2011. Prevalence of human parechovirus in Chinese children hospitalized for acute gastroenteritis. Clin Microbiol Infect 17:1563-1569.
38. Zhong H, Lin Y, Sun J, Su L, Cao L, Yang Y, Xu J. 2011. Prevalence and genotypes of human parechovirus in stool samples from hospitalized children in Shanghai, China, 2008 and 2009. J Med Virol 83:1428-1434.