Long time series in us fisheries Oceanography

Oceanography

Volumn 27, Issue 4, 2014, Pages 48-68

  McClatchie, Sam ^a   Duffy Anderson, Janet ^b   Field, John C ^c   Goericke, Ralf ^d   Griffith, Dave ^a   Hanisko, David S ^e   Hare, Jonathan A ^b   Lyczkowski Shultz, Joanne ^e   Peterson, William T ^e   Watson, William ^a   Weber, Edward D ^a   Zapfe, Glenn ^e  

^a SOUTHWEST FISHERIES SCIENCE CENTER   (United States)

^b ALASKA FISHERIES SCIENCE CENTER   (United States)

^c NOAA EARTH SYSTEM RESEARCH LABORATORY   (United States)

^d UNIVERSITY OF CALIFORNIA   (United States)

^e NATIONAL MARINE FISHERIES SERVICE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 84919832781     PISSN: 10428275     EISSN: None     Source Type: Journal    
DOI: 10.5670/oceanog.2014.86     Document Type: Article

References (132)

1. Ainley, D.G., W.J. Sydeman, R.H. Parrish, and W.H. Lenarz. 1993 Oceanic factors influencing distribution of young rockfish (Sebastes) in central California: A predator’s perspective. California Cooperative Oceanic Fisheries Investigations Reports 34:133–139
2. Bacheler, N.M., L. Ciannelli, K.M. Bailey, and J.T. Duffy-Anderson. 2010 Spatial and temporal patterns of walleye pollock (Theragra chalcogramma) spawning in the eastern Bering Sea inferred from egg and larval distributions. Fisheries Oceanography 19:107–120, http://dx.doi.org/10.1111/j.1365-2419.2009.00531.x.
3. Bailey, K.M. 2000 Shifting control of recruitment of walleye pollock Theragra chalcogramma after a major climatic and ecosystem change. Marine Ecology Progress Series 198:215–224, http://dx.doi.org/10.3354/meps198215
4. Bailey, K.M., L. Ciannelli, N.A. Bond, A. Belgrano, and N.C. Stenseth. 2005 Recruitment of walleye pollock in a physically and biologically complex ecosystem: A new perspective. Progress in Oceanography 67:24–42, http://dx.doi.org/10.1016/j.pocean.2005.06.001
5. Begg, G.A., J.A. Hare, and D.D. Sheehan. 1999 The role of life history parameters as indicators of stock structure. Fisheries Research 43:141-163, http://dx.doi.org/10.1016/S0165-7836(99)00071-5
6. Bell, R.J., J.A. Hare, J.P. Manderson, and D.E. Richardson. 2014 Externally driven changes in the abundance of summer and winter flounder. ICES Journal of Marine Science, http://dx.doi.org/10.1093/icesjms/fsu069
7. Berner, L.D. 1960 Unusual features in the distribution of pelagic tunicates in 1957 and 1958 California Cooperative Oceanic Fisheries Investigations Reports 7:133–135
8. Beszczynska-Möller, A., and S.R. Dye, eds. 2013 ICES Report on Ocean Climate 2012 ICES Cooperative Research Report No. 321, 73 pp.
9. Bi, H., W. Peterson, and P. Strub. 2011 Transport and coastal zooplankton communities in the northern California Current system. Geophysical Research Letters 38, L12607, http://dx.doi.org/10.1029/2011GL047927
10. Bigelow, H.B. 1926 Plankton of the offshore waters of the Gulf of Maine. Bulletin of the Bureau of Fisheries 40:1–509
11. Bjorkstedt, E., R. Goericke, S. McClatchie, E. Weber, W. Watson, N. Lo, W.T. Peterson, R.D. Brodeur, T. Auth, J. Fisher, and others. 2012 State of the California Current 2011–2012: Ecosystems respond to local forcing as La Niña wavers and wanes. California Cooperative Oceanic Fisheries Investigations Reports 50:41–78
12. Boeing, W.J., and J.T. Duffy-Anderson. 2008 Ichthyoplankton dynamics and biodiversity in the Gulf of Alaska: Responses to environmental change. Environmental Indicators 8:292–302, http://dx.doi.org/10.1016/j.ecolind.2007.03.002
13. Bograd, S.J., C.G. Castro, E. Di Lorenzo, D.M. Palacios, H. Bailey, W. Gilly, and F.P. Chavez. 2008 Oxygen declines and the shoaling of the hypoxic boundary in the California Current. Geophysical Research Letters 35, L12607, http://dx.doi.org/10.1029/2008GL034185
14. Braun-McNeill, J., C.R. Sasso, S.P. Epperly, and C. Rivero. 2008 Feasibility of using sea surface temperature imagery to mitigate cheloniid sea turtle– fishery interactions off the coast of northeastern USA. Endangered Species Research 5:257–266, http://dx.doi.org/10.3354/esr00145
15. Brinton, E. 1960 Changes in the distribution of the euphausiid crustaceans in the region of the California Current. California Cooperative Oceanic Fisheries Investigations Reports 7:137–146
16. Brinton, E., and A. Townsend. 2003 Decadal variability in abundances of the dominant euphausiid species in southern sectors of the California Current. Deep Sea Research Part II 50:2,449–24+72, http://dx.doi.org/10.1016/S0967-0645(03)00126-7
17. Brodziak, J., and L. O’Brien. 2005 Do environmental factors affect recruits per spawner anomalies of New England groundfish? ICES Journal of Marine Science 62(7):1394–1407, http://dx.doi.org/10.1016/j.icesjms.2005.04.019
18. Burke, B.J., W.T. Peterson, B.R. Beckman, C. Morgan, E.A. Daly, and M. Litz. 2013 Multivariate models of adult Pacific Salmon returns. PLOS ONE 8(1):e54134, http://dx.doi.org/10.1371/journal.pone.0054134
19. Busby, M.S., J.T. Duffy-Anderson, K.L. Mier, and L.G. De Forest. 2014
20. Spatial and temporal patterns in summer ichthyoplankton assemblages on the eastern Bering Sea shelf 1996–2007 Fisheries Oceanography 23:270–287, http://dx.doi.org/10.1111/fog.12062
21. Checkley, D. Jr., and M. Lindegren. 2014 Sea surface temperature variability at the Scripps Institution of Oceanography pier. Journal of Physical Oceanography, http://dx.doi.org/10.1175/JPO-D-13-0237.1
22. Chelton, D.B., P.A. Bernal, and J.A. McGowan. 1982 Large-scale interannual physical and biological interaction in the California Current. Journal of Marine Research 40:95–112
23. Ciannelli, L., K.M. Bailey, K.-S. Chan, A. Belgrano, and N.C. Stenseth. 2005 Climate change causing phase transitions of walleye pollock (Theragra chalcogramma) recruitment dynamics. Proceedings of the Royal Society B 272:1735–1743
24. Clark, F.N., and J.C. Marr. 1955 Part II: Population dynamics of the Pacific sardine. California Cooperative Oceanic Fisheries Investigations Progress Report 4:11–48
25. Clarke, G., W.T. Edmondson, and W.E. Ricker. 1946 Dynamics of production in a marine area. Ecological Monographs 16:321–337
26. Cowen, R.K., and C.M. Guigand. 2008 In situ Ichthyoplankton Imaging System (ISIIS): System design and preliminary results. Limnology and Oceanography Methods 6:126–132, http://dx.doi.org/10.4319/lom.2008.6.126
27. Daly, E., T. Auth, R. Brodeur, and W. Peterson. 2013 Winter ichthyoplankton biomass as a predictor of early summer prey fields and survival of juvenile salmon in the northern California Current. Marine Ecology Progress Series 484:203–217, http://dx.doi.org/10.3354/meps10320
28. Davis, C.S., S.M. Gallager, M. Marra, W.K. Stewart. 1996 Rapid visualization of plankton abundance and taxonomic composition using the Video Plankton Recorder. Deep Sea Research Part II 43:1947–1970, http://dx.doi.org/10.1016/S0967-0645(96)00051-3
29. Di Lorenzo, E., N. Schneider, K. Cobb, P. Franks, K. Chhak, A. Miller, J. McWilliams, S. Bograd, H. Arango, E. Curchitser, and others. 2008 North Pacific Gyre Oscillation links ocean climate and ecosystem change. Geophysical Research Letters 35, L08607, http://dx.doi.org/10.1029/2007GL032838
30. Dougherty, A.B., Bailey, K.M., and K.L. Mier. 2007 Interannual differences in growth and hatch date distributions of age-0 walleye pollock Theragra chalcogramma (Pallas) from the Shumagin Islands region of the Gulf of Alaska, 1985–2001. Journal of Fish Biology 71:763–780, http://dx.doi.org/10.1111/j.1095-8649.2007.01543.x
31. Doyle, M.J., and K.L. Mier. 2012 A new conceptual framework for evaluating the early ontogeny phase of recruitment processes among marine fish species. Canadian Journal of Fisheries and Aquatic Sciences 69:2112–2129, http://dx.doi.org/10.1139/cjfas-2012-0171
32. Doyle, M.J., S.J. Picquelle, K.L. Mier, M.C. Spillane, and N.A. Bond. 2009 Larval fish abundance and physical forcing in the Gulf of Alaska, 1981–2003 Progress in Oceanography 80(3–4):163–187, http://dx.doi.org/10.1016/j.pocean.2009.03.002
33. Duffy-Anderson, J.T., M.S. Busby, K.L. Mier, C.M. Deliyanides, and P.J. Stabeno. 2006 Spatial and temporal patterns in summer ichthyoplankton assemblages on the eastern Bering Sea shelf 1996–2000 Fisheries Oceanography 15(1):80–94, http://dx.doi.org/10.1111/j.1365-2419.2005.00348.x.
34. EcoAP (Ecosystem Assessment Program). 2012 Ecosystem Status Report for the Northeast Shelf Large Marine Ecosystem–2011 US Department of Commerce, Northeast Fisheries Science Center Ref Doc. 12–07, 32 pp.
35. Edwards, M., G. Beaugrand, G.C. Hays, A.J. Koslow, and A.J. Richardson. 2010 Multi-decadal oceanic ecological datasets and their application in marine policy and management. Trends in Ecology and Evolution 2:602–610, http://dx.doi.org/10.1016/j.tree.2010.07.007
36. Field, J.C. 2013 Status of Bocaccio, Sebastes paucispinis, in the Conception, Monterey and Eureka INPFC Areas as Evaluated for 2013 Stock Assessment and Fishery Evaluation, Pacific Fishery Management Council, Portland, OR, 79 pp.
37. Field, J.C., A.D. MacCall, R.W. Bradley, and W.J. Sydeman. 2010a. Estimating the impacts of fishing on dependant predators: A case study in the California Current. Ecological Applications 20:2223–2236, http://dx.doi.org/10.1890/09-0428.1
38. Field, J.C., A.D. MacCall, S. Ralston, M. Love, and E. Miller. 2010b. Bocaccionomics: The effectiveness of pre-recruit indices for assessment and management of bocaccio. California Cooperative Oceanic Fisheries Investigations Reports 51:77–90
39. Fogarty, M., L. Incze, K. Hayhoe, D. Mountain, and J. Manning. 2008 Potential climate change impacts on Atlantic cod (Gadus morhua) off the northeastern USA. Mitigation and Adaptation Strategies for Global Change 13:453–466, http://dx.doi.org/10.1007/s11027-007-9131-4
40. Francis, R.C., and S.R. Hare. 1994 Decadal-scale regime shifts in the large marine ecosystems of the North-east Pacific: A case for historical science. Fisheries Oceanography 3:279–291, http://dx.doi.org/10.1111/j.1365-2419.1994.tb00105.x.
41. Gallaway, B.J., W.J. Gazey, J.G. Cole, and R.G. Fechhelm. 2007 Estimation of potential impacts from offshore liquefied natural gas terminals on red snapper and red drum fisheries in the Gulf of Mexico: An alternative approach. Transactions of the American Fisheries Society 136:655–677, http://dx.doi.org/10.1577/T06-062.1
42. Gledhill, C.T., and J. Lyczkowski-Shultz. 2000 Indices of larval king mackerel (Scomberomorus cavalla) abundance in the Gulf of Mexico for use in population assessments. Fishery Bulletin of the United States 98:684–691, http://fishbull.noaa.gov/984/03.pdf.
43. Greene, C.H., E.L. Meyer-Gutbrod, L.P. McGarry, L.C. Hufnagle Jr., D. Chu, S. McClatchie, A. Packer, J.-B. Jung, T. Acker, H. Dorn, and C. Pelkie. 2014 A Wave Glider approach to fisheries acoustics: Transforming how we monitor the nation’s commercial fisheries in the 21st century. Oceanography 27(4):168–174, http://dx.doi.org/10.5670/oceanog.2014.82
44. Greene, C.H., E. Meyer-Gutbrod, B.C. Monger, L.P. McGarry, A.J. Pershing, I.M. Belkin, P.S. Fratantoni, D.G. Mountain, R.S. Pickart, A. Proshutinsky, and others. 2013 Remote climate forcing of decadal-scale regime shifts in Northwest Atlantic shelf ecosystems. Limnology and Oceanography 58(3):803–816
45. Greene, C.H., A.J. Pershing, T.M. Cronin, and N. Cecci. 2008 Arctic climate change and its impacts on the ecology of the North Atlantic. Ecology (suppl. 2008) 89:S24S38, http://dx.doi.org/10.1890/07-0550.1
46. Hanisko, D.S., and J. Lyczkowski-Shultz. 2003 Occurrence and pelagic habitat of reef fish larvae in the Gulf of Mexico. Pp. 205–224 in Fisheries, Reefs, and Offshore Development. D.R. Stanley and A. Scarborough-Bull, eds, American Fisheries Society, Symposium 36, Bethesda, MD.
47. Hanisko, D.S., J. Lyczkowski-Shultz, and G.W. Ingram. 2007 Indices of larval red snapper occurrence and abundance for use in stock assessment. Pp. 285–300 in Red Snapper Ecology and Fisheries in the US Gulf of Mexico. W.F. Patterson III, J.H. Cowan Jr., G.R. Fitzhugh, and D.L. Nieland, eds, American Fisheries Society Symposium 60, Bethesda, MD.
48. Hare, J.A., J.P. Manderson, J.A. Nye, M.A. Alexander, P.J. Auster, D.L. Borggaard, A.M. Capotondi, K.B. Damon-Randall, E. Heupel, I. Mateo, and others. 2012 Cusk (Brosme brosme) and climate change: Assessing the threat to a candidate marine fish species under the US Endangered Species Act. ICES Journal of Marine Science 69:1753–1768, http://dx.doi.org/10.1093/icesjms/fss160
49. Hastie, J., and S. Ralston. 2007 Pre-Recruit Survey Workshop: Report to the Pacific Fishery Management Council. http://www.pcouncil.org/bb/2007/0407/E1b_NWFSC3_sup.pdf
50. He, X., D.E. Pearson, E.J. Dick, J.C. Field, S. Ralston, and A.D. MacCall. 2011 Status of the Widow Rockfish Resource in 2011 Stock Assessment and Fishery Evaluation, Pacific Fishery Management Council, Portland, OR, 317 pp.
51. Heintz, R.A., E.C. Siddon, E.V. Farley, and J.M. Napp. 2013 Correlation between recruitment and fall condition of age-0 pollock (Theragra chalcogramma) from the eastern Bering Sea under varying climate conditions. Deep-Sea Research Part II 94:150–156, http://dx.doi.org/10.1016/j.dsr2.2013.04.006
52. Hooff, R.C., and W.T. Peterson. 2006 Copepod biodiversity as an indicator of changes in ocean and climate conditions of the northern California current ecosystem. Limnology and Oceanography 51:2607–2620, http://dx.doi.org/10.4319/lo.2006.51.6.2607
53. Johnson, D.R., H.M. Perry, J. Lyczkowski-Shultz, and D.S. Hanisko. 2009 Red snapper larval transport in the northern Gulf of Mexico. Transactions of the American Fisheries Society 138:458–470, http://dx.doi.org/10.1577/T08-008.1
54. Jones, D.T., S.C. Steinssen, and A.L. McCarthy. 2014 Results of the Acoustic-Trawl Surveys of Walleye Pollock (Gadus chalcogrammus) in the Gulf of Alaska, February-March 2013 (DY2013–02 and DY2013–03). AFSC Processed Report 2014-03, Alaska Fisheries Science Center, NOAA, NMFS, Seattle, WA, 81 pp.
55. Jossi, J.W., A.W.G. John, and D. Sameoto. 2003 Continuous plankton recorder sampling off the east coast of North America: History and status. Progress in Oceanography 58:313–325, http://dx.doi.org/10.1016/j.pocean.2003.08.010
56. Kane, J. 2007 Zooplankton abundance trends on Georges Bank, 1977–2004 ICES Journal of Marine Science 64:909–919, http://dx.doi.org/10.1093/icesjms/fsm066
57. Karl, D.M. 2010 Oceanic ecosystem timeseries programs: Ten lessons learned. Oceanography 23(3):104–125, http://dx.doi.org/10.5670/oceanog.2010.27
58. Karl, D.M., J.E. Dore, R. Lukas, A.F. Michaels, N.R. Bates, and A. Knap. 2001 Building the longterm picture: The US JGOFS time-series programs. Oceanography 14(4):6–17, http://dx.doi.org/10.5670/oceanog.2001.02
59. Karnauskas, M., M.J. Schirripa, C.R. Kelble, G.S. Cook, and J.K. Craig. 2013 Ecosystem Status Report for the Gulf of Mexico. NOAA Technical Memorandum NMFS-SEFSC-653, Miami, FL, 52 pp.
60. Keister, J.E., E. Di Lorenzo, C.A. Morgan, V. Combes, and W.T. Peterson. 2011 Zooplankton species composition is linked to ocean transport in the northern California Current. Global Change Biology 17:2498–2511, http://dx.doi.org/10.1111/j.1365-2486.2010.02383.x.
61. Knight, C.R. 2014 Taxonomy, diversity, and distribution patterns of portunid crab megalopae in the northern Gulf of Mexico during fall of 2003 MS Thesis, University of Southern Mississippi, 174 pp.
62. Koslow, A.J., and J. Couture. 2013 Follow the fish. Nature 502:163–164, http://www.nature.com/news/ocean-sciences-follow-the-fish-1.13886
63. Koslow, A.J., and J. Couture. 2015 Pacific Ocean observation programs: Gaps in ecological time series. Marine Policy 51:408–414, http://dx.doi.org/10.1016/j.marpol.2014.09.003
64. Koslow, A.J., R. Goericke, and W. Watson. 2013 Fish assemblages in the southern California Current: Relationships with climate, 1951–2008 Fisheries Oceanography 22:207–219, http://dx.doi.org/10.1111/fog.12018
65. Kramer, D., M.J. Kalin, E.G. Stevens, J.R. Thrailkill, and J.R. Zweifel. 1972 Collecting and Processing Data on Fish Eggs and Larvae in the California Current Region. NOAA Technical Report, NMFS Circular 370, La Jolla, CA, 38 pp.
66. Lasker, R., ed. 1985 An Egg Production Method for Estimating Spawning Biomass of Pelagic Fish: Application to Northern Anchovy, Engraulis mordax. US Department of Commerce, National Marine Fisheries Service, Southwest Fisheries Science Center, La Jolla, CA, NOAA Technical Report, NMFS 36, 105 pp.
67. Lee, R., W. Hagen, and G. Kattner. 2006 Lipid storage in marine zooplankton. Marine Ecology Progress Series 307:273–306, http://dx.doi.org/10.3354/meps307273
68. Lin, P., R. Ji, C.S. Davis, and D.J. McGillicuddy Jr. 2010 Optimizing plankton survey strategies using observing system simulation experiments. Journal of Marine Systems 82:187–194, http://dx.doi.org/10.1016/j.jmarsys.2010.05.005
69. Lindegren, M., and D.M. Checkley Jr. 2013 Temperature dependence of Pacific sardine (Sardinops sagax) recruitment in the California Current Ecosystem revisited and revised. Canadian Journal of Fisheries and Aquatic Sciences 70:245–252, http://dx.doi.org/10.1139/cjfas-2012-0211
70. Link, J., L. Col, V. Guida, D. Dow, J. O’Reilly, J. Green, W. Overholtz, D. Pelka, C. Legault, J. Vitaliano, and others. 2009 Response of balanced network models to large-scale perturbation: Implications for evaluating the role of small pelagics in the Gulf of Maine. Ecological Modelling 220:351–369, http://dx.doi.org/10.1016/j.ecolmodel.2008.10.009
71. Link, J.S., E.A. Fulton, and R.J. Gamble. 2010 The northeast US application of ATLANTIS: A full system model exploring marine ecosystem dynamics in a living marine resource management context. Progress in Oceanography 87(1):214–234, http://dx.doi.org/10.1016/j.pocean.2010.09.020
72. Lo, N.C.H. 2007 Daily larval production of Pacific hake (Merluccius productus) off California in 1951– 2006 California Cooperative Oceanic Fisheries Investigations Reports 48:147–164
73. Lo, N.C.H., E. Dorval, R. Funes-Rodríguez, M.E. Hernández-Rivas, Y. Huang, and Z. Fan. 2010 Utilities of larval densities of Pacific mackerel (Scomber japonicus) off California, USA and west coast of Mexico from 1951 to 2008, as spawning biomass indices. Ciencia Pesquera 18(2):59–75
74. Lough, R.G. 2004 Essential Fish Habitat Source Document: Atlantic Cod, Gadus morhua, Life History and Habitat Characteristics, 2nd ed. NOAA Technical Memorandum NMFS-NE 190, 104 pp.
75. Lyczkowski-Shultz, J., and D.S. Hanisko. 2007 A time series of observations on red snapper larvae from SEAMAP surveys, 1982–2003: Seasonal occurrence, distribution, abundance, and size. Pp. 3–23 in Red Snapper Ecology and Fisheries in the US Gulf of Mexico. W.F. Patterson III, J.H. Cowan Jr., G.R. Fitzhugh, and D.L. Nieland, eds, American Fisheries Society, Symposium 60, Bethesda, MD.
76. Lyczkowski-Shultz, J., D.S. Hanisko, K.J. Sulak, M. Konieczna, and P.J. Bond. 2013 Characterization of ichthyoplankton in the northeastern Gulf of Mexico from SEAMAP plankton surveys, 1982–1999 Gulf and Caribbean Research 25:43–98
77. Lynch, P.D, J.A. Nye, J.A. Hare, C.A. Stock, M.A. Alexander, J.D. Scott, K.L. Curti, and K. Drew. 2014 Projected ocean warming creates a conservation challenge for river herring populations. ICES Journal of Marine Science, http://dx.doi.org/10.1093/icesjms/fsu134
78. Mantua, N.J., S.R. Hare, Y. Zhang, J.W. Wallace, and R.C. Francis. 1997 A Pacific interdecadal oscillation with impacts on salmon production. Bulletin of the American the Meteorological Society 78:1069–1079, http://dx.doi.org/10.1175/1520-0477(1997)078<1069:APICOW>2.0.CO;2
79. Marancik, K.E., D.E. Richardson, J. Lyczkowski-Shultz, R.K. Cowen, and M. Konieczna. 2012 Spatial and temporal distribution of grouper larvae (Serranidae: Epinephelinae: Epinephelini) in the Gulf of Mexico and Straits of Florida. Fishery Bulletin of the United States 110:1–20, http://fishbull.noaa.gov/1101/marancik.pdf.
80. McClatchie, S. 2014 Regional Fisheries Oceanography of the California Current System: The CalCOFI Program. Springer, Dordrecht, 235 pp.
81. McClatchie, S., R. Goericke, R. Cosgrove, G. Auad, and R. Vetter. 2010 Oxygen in the Southern California Bight: Multidecadal trends and implications for demersal fisheries. Geophysical Research Letters 37, L19602, http://dx.doi.org/10.1029/2010GL044497
82. Megrey, B.A., A.B. Hollowed, S.R. Hare, S.A. Macklin, and P.J. Stabeno. 1996 Contributions of FOCI research to forecasts of year-class strength of walleye pollock in Shelikof Strait, Alaska. Fisheries Oceanography 5:189–203, http://dx.doi.org/10.1111/j.1365-2419.1996.tb00092.x.
83. Meyer-Gutbrod, E.L., and C.H. Greene. 2014 Climate-associated regime shifts drive decadalscale variability in recovery of North Atlantic right whale population. Oceanography 27(3):148–153, http://dx.doi.org/10.5670/oceanog.2014.64
84. Millett, A.F. 2010 Zooplankton communities in the northern Gulf of Mexico: Implications for ecosystem management. MS Thesis, University of South Alabama, 79 pp.
85. Mountain, D.G., and J. Kane. 2009 Major changes in the Georges Bank ecosystem, 1980s to the 1990s. Marine Ecology Progress Series 398:81–91, http://dx.doi.org/10.3354/meps08323
86. Muhling, B.A., J.T. Lamkin, and M.A. Roffer. 2010 Predicting the occurrence of Atlantic bluefin tuna (Thunnus thynnus) larvae in the northern Gulf of Mexico: Building a classification model from archival data. Fisheries Oceanography 19:526–539, http://dx.doi.org/10.1111/j.1365-2419.2010.00562.x.
87. Muhling, B.A., J.T. Lamkin, and W.J. Richards. 2012a. Decadal-scale responses of larval fish assemblages to multiple ecosystem processes in the northern Gulf of Mexico. Marine Ecology Progress Series 450:37–53, http://dx.doi.org/10.3354/meps09540
88. Muhling, B.A., M.A. Roffer, J.T. Lamkin, G.W. Ingram Jr., M.A. Upton, G. Gawlikowski, F. Muller-Karger, S. Habtes, and W.J. Richards. 2012b. Overlap between Atlantic bluefin tuna spawning grounds and observed Deepwater Horizon surface oil in the northern Gulf of Mexico. Marine Pollution Bulletin 64:679–687, http://dx.doi.org/10.1016/j.marpolbul.2012.01.034
89. Murawski, S.A. 1993 Climate change and marine fish distributions: Forecasting from historical analogy. Transactions of the American Fisheries Society 122:647–658, http://dx.doi.org/10.1577/1548-8659(1993)122 <0647:CCAMFD>2.3.CO;2
90. Nye, J.A., J.S. Link, J.A. Hare, and W.J. Overholz. 2009 Changing spatial distribution of fish stocks in relation to climate and population size on the Northeast United States continental shelf. Marine Ecology Progress Series 393:111–129, http://dx.doi.org/10.3354/meps08220
91. O’Brien, T.D., P.H. Wiebe, and T. Falkenhaug, eds. 2013 ICES Zooplankton Status Report 2010/2011 ICES Cooperative Research Report No. 318, 208 pp.
92. Ohman, M., and P. Smith. 1995 A comparison of zooplankton sampling methods in the CalCOFI time series. California Cooperative Oceanic Fisheries Investigations Reports 36:153–158
93. Ohman, M., and E. Venrick. 2003 CalCOFI in a changing ocean. Oceanography 16(3):76–85, http://dx.doi.org/10.5670/oceanog.2003.34
94. Olson, R.J., and H.M. Sosik. 2007 A submersible imaging-in-flow instrument to analyze nano-and microplankton: Imaging FlowCytobot. Limnology and Oceanography Methods 5:195–203, http://dx.doi.org/10.4319/lom.2007.5.195
95. Peterson, W.T., C.A. Morgan, J.O. Peterson, J.L. Fisher, B.J. Burke, and K. Fresh. 2013 Ocean Ecosystem Indicators of Salmon Marine Survival in the Northern California Current. http://www.nwfsc.noaa.gov/research/divisions/fe/estuarine/oeip/documents/Peterson_etal_2013.pdf.
96. Peterson, W.T., and F.B. Schwing. 2003 A new climate regime in Northeast Pacific ecosystems. Geophysical Research Letters 30, 1896, http://dx.doi.org/10.1029/2003GL017528
97. Petrik, C., J.T. Duffy-Anderson, F.J. Mueter, K. Hedstrom, and E. Curchitser. In press. Modeling the effect of climate variations on the transport and distribution of walleye pollock early life stages in the eastern Bering Sea. Progress in Oceanography.
98. Picquelle, S. and B. Megrey. 1993 A preliminary spawning biomass estimate for walleye pollock, Theragra chalcogramma, in the Shelikof Strait, Alaska, based on the annual egg production method. Bulletin of Marine Science 53:728–749
99. Posgay, J.A., and R.R. Marak. 1980 The MARMAP bongo zooplankton samplers. Journal of Northwest Atlantic Fisheries Science 1:91–99, http://journal.nafo.int/J01/posgay.pdf.
100. Rago, P.J. 1984 Production forgone: An alternative method for assessing the consequences of fish entrainment and impingement losses at power plants and other water intakes. Ecological Modelling 24:79–111, http://dx.doi.org/10.1016/0304-3800(84)90056-5
101. Ralston, S., J. Bence, E. Eldridge, and W. Lenarz. 2003 An approach to estimating rockfish biomass based on larval production with application to Sebastes jordani. Fishery Bulletin of the United States 101:129–146, http://fishbull.noaa.gov/1011/11ralsto.pdf.
102. Ralston, S., J.C. Field, and K.M. Sakuma. In press. Longterm variation in a Central California pelagic forage assemblage. Journal of Marine Systems, http://dx.doi.org/10.1016/j.jmarsys.2014.06.013
103. Ralston, S., and B. MacFarlane. 2010 Population estimation of bocaccio (Sebastes paucispinis) based on larval production. Canadian Journal of Fisheries and Aquatic Sciences 67:1005–1020, http://dx.doi.org/10.1139/F10-039
104. Ralston, S., K.M. Sakuma, and J.C. Field. 2013 Interannual variation in pelagic juvenile rockfish abundance: Going with the flow. Fisheries Oceanography 22:288–308, http://dx.doi.org/10.1111/fog.12022
105. Ralston, S., and I. Stewart. 2013 Anomalous distributions of pelagic juvenile rockfish on the US West Coast in 2005 and 2006 California Cooperative Oceanic and Fisheries Investigations Reports 54:155–166
106. Remsen, A., T. Hopkins, and S. Samson. 2004 What you see is not what you catch: A comparison of concurrently collected net, optical plankton counter, and shadowed image particle profiling evaluation recorder data from northeast Gulf of Mexico. Deep Sea Research Part I 51:129–151, http://dx.doi.org/10.1016/j.dsr.2003.09.008
107. Rester, J.K. 2010 SEAMAP Environmental and Biological Atlas of the Gulf of Mexico, 2010 Gulf States Marine Fisheries Commission, Ocean Springs, MS, 84 pp.
108. Richards, W.J. 1987 MEXUS-Gulf ichthyoplankton research, 1977–84 Marine Fisheries Review 49:39–41, http://spo.nmfs.noaa.gov/mfr491/mfr4917.pdf.
109. Richards, W.J., ed. 2006 Early Stages of Atlantic Fishes: An Identification Guide for the Western Central North Atlantic. CRC Press, FL, 2,640 pp.
110. Richardson, D.E., J.A. Hare, W.J. Overholtz, and D.L. Johnson. 2010 Development of long-term larval indices for Atlantic herring (Clupea harengus) on the northeast US continental shelf. ICES Journal of Marine Science 67:617–627, http://dx.doi.org/10.1093/icesjms/fsp276
111. Sakuma, K.M., E.P. Bjorkstedt, and S. Ralston. 2013 Distribution of pelagic juvenile rockfish (Sebastes spp.) in relation to temperature and fronts off central California. California Cooperative Oceanic Fisheries Investigations Reports 54:167–179
112. Sakuma, K.M., S. Ralston, and V.G. Wespestad. 2006 Interannual and spatial variation in the distribution of young-of-the-year rockfish (Sebastes spp.): Expanding and coordinating a survey sampling frame. California Cooperative Oceanic Fisheries Investigations Reports 47:127–139
113. Samson, S., T. Hopkins, A. Remsen, L. Langebrake, T. Sutton, and J. Patten. 2001 A system for high-resolution zooplankton imaging. IEEE Journal of Oceanic Engineering 26:671–676, http://dx.doi.org/10.1109/48.972110
114. Santora, J.A., S. Ralston, and W.J. Sydeman. 2011 Spatial organization of krill and seabirds in the California Current. ICES Journal of Marine Science 68(7):1391–1402, http://dx.doi.org/10.1093/icesjms/fsr046
115. Santora, J.A., I.D. Schroeder, J.C. Field, B.K. Wells, and W.J. Sydeman. 2014 Spatio-temporal dynamics of ocean conditions and forage taxa reveals regional structuring of seabird-prey relationships. Ecological Applications 24:1730–1747, http://dx.doi.org/10.1890/13-1605.1
116. Schroeder, I.D., J.A. Santora, A.M. Moore, C.A. Edwards, J. Fiechter, E.L. Hazen, S.J. Bograd, J.C. Field, and B.K. Well. 2014 Application of a data-assimilative regional ocean modeling system for assessing California Current System ocean conditions, krill, and juvenile rockfish interannual variability. Geophysical Research Letters 41:5942–5950, http://dx.doi.org/10.1002/2014GL061045
117. Scott, G.P., S.C. Turner, C.B. Grimes, W.J. Richards, and E.B. Brothers. 1993 Indices of larval bluefin tuna, Thunnus thynnus, abundance in the Gulf of Mexico: Modeling variability in growth, mortality, and gear selectivity. Bulletin of Marine Science 53:912–929
118. Sette, O.E. 1943 Biology of the Atlantic mackerel (Scomber scombrus) of North America: Part I. Early life history, including growth, drift, and mortality of the egg and larval populations. Fishery Bulletin of the United States 50:149–237, http://www.nefsc.noaa.gov/publications/classics/sette1943/sette1943.pdf.
119. Sheffield Guy, L., J. Duffy-Anderson, A.C. Matarese, C.W. Mordy, J.M. Napp, and P.J. Stabeno. 2014 Understanding climate control of fisheries recruitment in the eastern Bering Sea: Long-term measurements and process studies. Oceanography 27(4):90–103, http://dx.doi.org/10.5670/oceanog.2014.89
120. Sherman, K., R. Lasker, W. Richards, and A.W. Kendall Jr. 1983 Ichthyoplankton and fish recruitment studies in large marine ecosystems. Marine Fisheries Review 45:1–25, http://spo.nmfs.noaa.gov/mfr4510-12/mfr4510-121.pdf.
121. Siddon, E.C., J.T. Duffy-Anderson, and F.J. Mueter. 2011 Community-level response of fish larvae to environmental variability in the southeastern Bering Sea. Marine Ecology Progress Series 426:225–239, http://dx.doi.org/10.3354/meps09009
122. Smart, T., J.T. Duffy-Anderson, and J. Horne. 2012 Alternating climate states influence walleye pollock life stages in the southeastern Bering Sea. Marine Ecology Progress Series 455:257–267, http://dx.doi.org/10.3354/meps09619
123. Smith, P.E., and S.L. Richardson, eds. 1977 Standard Techniques for Pelagic Fish Egg and Larva Surveys. FAO Fisheries Technical Paper 175, Rome, 100 pp.
124. Soutar, A., and J. Isaacs. 1974 Abundance of pelagic fish during the 19th and 20th centuries as recorded in anaerobic sediment off the Californias. Fishery Bulletin of the United States 72:257–273, http://fishbull.noaa.gov/72-2/soutar.pdf.
125. Stuntz, W.E., C.E. Bryan, K. Savastano, R.S. Waller and P.A. Thompson. 1983 SEAMAP Environmental and Biological Atlas of the Gulf of Mexico, 1982 Gulf States Marine Fisheries Commission, Ocean Springs, MS, 145 pp.
126. Thayer, J.A., J.C. Field, and W.J. Sydeman. 2014 Changes in California Chinook salmon diet over the past 50 years: Relevance to the recent population crash. Marine Ecology Progress Series 498:249–261, http://dx.doi.org/10.3354/meps10608
127. Thayer, J.A., and W.J. Sydeman. 2007 Spatiotemporal variability in prey harvest and reproductive ecology of a piscivorous predator, Cerorhinca monocerata, in an upwelling system. Marine Ecology Progress Series 329:253–265, http://dx.doi.org/10.3354/meps329253
128. Todd, R.E., D. Rudnick, M. Mazloff, R. Davis, and B. Cornuelle. 2011 Poleward flows in the southern California Current System: Glider observations and numerical simulation. Journal of Geophysical Research 116, C02026, http://dx.doi.org/10.1029/2010JC006536
129. Wells, B.K., J.A. Santora, J.C. Field, R.B. MacFarlane, B.B. Marinovic, and W.J. Sydeman. 2012 Population dynamics of Chinook salmon Oncorhynchus tshawytscha relative to prey availability in the central California coastal region. Marine Ecology Progress Series 457:125–137, http://dx.doi.org/10.3354/meps09727
130. Wilson, M.T. 2009 Ecology of small midwater fishes in the western Gulf of Alaska: Part I. Geographic distribution in relation to prey density and hydrography. Marine Ecology Progress Series 392:223–237, http://dx.doi.org/10.3354/meps08160
131. Zador, S., ed. 2013 Ecosystem Considerations 2013 Stock Assessment and Fishery Evaluation Report, North Pacific Fisheries Management Council, Anchorage, AK, 236 pp.
132. Zwolinski, J.P., R.L. Emmett, and D.A. Demer. 2011 Predicting habitat to optimize sampling of Pacific sardine (Sardinops sagax). ICES Journal of Marine Science 68:867–879, http://dx.doi.org/10.1093/icesjms/fsr038.