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Volumn 20, Issue 6, 2014, Pages 1076-1087

Cell-type-resolved quantitative proteomics of murine liver

Author keywords

[No Author keywords available]

Indexed keywords

CHOLESTEROL; FATTY ACID; GROWTH FACTOR RECEPTOR; PROTEOME; RNA; TRANSFORMING GROWTH FACTOR BETA;

EID: 84919690585     PISSN: 15504131     EISSN: 19327420     Source Type: Journal    
DOI: 10.1016/j.cmet.2014.11.002     Document Type: Article
Times cited : (133)

References (56)
  • 1
    • 0037435030 scopus 로고    scopus 로고
    • Mass spectrometry-based proteomics
    • R. Aebersold, and M. Mann Mass spectrometry-based proteomics Nature 422 2003 198 207
    • (2003) Nature , vol.422 , pp. 198-207
    • Aebersold, R.1    Mann, M.2
  • 2
    • 0027943309 scopus 로고
    • Contribution of the mitochondrial compartment to the optical properties of the rat liver: A theoretical and practical approach
    • B. Beauvoit, T. Kitai, and B. Chance Contribution of the mitochondrial compartment to the optical properties of the rat liver: a theoretical and practical approach Biophys. J. 67 1994 2501 2510
    • (1994) Biophys. J. , vol.67 , pp. 2501-2510
    • Beauvoit, B.1    Kitai, T.2    Chance, B.3
  • 3
    • 77956958497 scopus 로고    scopus 로고
    • Regulation of liver regeneration by growth factors and cytokines
    • F. Bohm, U.A. Kohler, T. Speicher, and S. Werner Regulation of liver regeneration by growth factors and cytokines EMBO Mol. Med. 2 2010 294 305
    • (2010) EMBO Mol. Med. , vol.2 , pp. 294-305
    • Bohm, F.1    Kohler, U.A.2    Speicher, T.3    Werner, S.4
  • 5
    • 57449099865 scopus 로고    scopus 로고
    • MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
    • J. Cox, and M. Mann MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification Nat. Biotechnol. 26 2008 1367 1372
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1367-1372
    • Cox, J.1    Mann, M.2
  • 7
    • 84907197082 scopus 로고    scopus 로고
    • Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ
    • J. Cox, M.Y. Hein, C.A. Luber, I. Paron, N. Nagaraj, and M. Mann Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ Mol. Cell. Proteomics 13 2014 2513 2526
    • (2014) Mol. Cell. Proteomics , vol.13 , pp. 2513-2526
    • Cox, J.1    Hein, M.Y.2    Luber, C.A.3    Paron, I.4    Nagaraj, N.5    Mann, M.6
  • 8
    • 0034023752 scopus 로고    scopus 로고
    • Modulation of transforming growth factor beta function in hepatocytes and hepatic stellate cells in rat liver injury
    • M. Date, K. Matsuzaki, M. Matsushita, Y. Tahashi, F. Furukawa, and K. Inoue Modulation of transforming growth factor beta function in hepatocytes and hepatic stellate cells in rat liver injury Gut 46 2000 719 724
    • (2000) Gut , vol.46 , pp. 719-724
    • Date, M.1    Matsuzaki, K.2    Matsushita, M.3    Tahashi, Y.4    Furukawa, F.5    Inoue, K.6
  • 9
    • 39149104044 scopus 로고    scopus 로고
    • The liver sinusoidal endothelial cell: A cell type of controversial and confusing identity
    • K. Elvevold, B. Smedsrød, and I. Martinez The liver sinusoidal endothelial cell: a cell type of controversial and confusing identity Am. J. Physiol. Gastrointest. Liver Physiol. 294 2008 G391 G400
    • (2008) Am. J. Physiol. Gastrointest. Liver Physiol. , vol.294 , pp. 391-G400
    • Elvevold, K.1    Smedsrød, B.2    Martinez, I.3
  • 10
    • 84905372152 scopus 로고    scopus 로고
    • Analyzing the First Drafts of the Human Proteome
    • Published online July 16, 2014
    • I. Ezkurdia, J. Vázquez, A. Valencia, and M. Tress Analyzing the First Drafts of the Human Proteome J. Proteome Res. 2014 Published online July 16, 2014
    • (2014) J. Proteome Res.
    • Ezkurdia, I.1    Vázquez, J.2    Valencia, A.3    Tress, M.4
  • 12
    • 44449118921 scopus 로고    scopus 로고
    • Fatty acid-binding proteins: Role in metabolic diseases and potential as drug targets
    • M. Furuhashi, and G.S. Hotamisligil Fatty acid-binding proteins: role in metabolic diseases and potential as drug targets Nat. Rev. Drug Discov. 7 2008 489 503
    • (2008) Nat. Rev. Drug Discov. , vol.7 , pp. 489-503
    • Furuhashi, M.1    Hotamisligil, G.S.2
  • 13
    • 0041305878 scopus 로고    scopus 로고
    • The thymosins. Prothymosin alpha, parathymosin, and beta-thymosins: Structure and function
    • E. Hannappel, and T. Huff The thymosins. Prothymosin alpha, parathymosin, and beta-thymosins: structure and function Vitam. Horm. 66 2003 257 296
    • (2003) Vitam. Horm. , vol.66 , pp. 257-296
    • Hannappel, E.1    Huff, T.2
  • 15
    • 0038664360 scopus 로고    scopus 로고
    • Changes in global gene and protein expression during early mouse liver carcinogenesis induced by non-genotoxic model carcinogens oxazepam and Wyeth-14,643
    • M. Iida, C.H. Anna, J. Hartis, M. Bruno, B. Wetmore, J.R. Dubin, S. Sieber, L. Bennett, M.L. Cunningham, and R.S. Paules Changes in global gene and protein expression during early mouse liver carcinogenesis induced by non-genotoxic model carcinogens oxazepam and Wyeth-14,643 Carcinogenesis 24 2003 757 770
    • (2003) Carcinogenesis , vol.24 , pp. 757-770
    • Iida, M.1    Anna, C.H.2    Hartis, J.3    Bruno, M.4    Wetmore, B.5    Dubin, J.R.6    Sieber, S.7    Bennett, L.8    Cunningham, M.L.9    Paules, R.S.10
  • 17
    • 84895538371 scopus 로고    scopus 로고
    • Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells
    • N.A. Kulak, G. Pichler, I. Paron, N. Nagaraj, and M. Mann Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells Nat. Methods 11 2014 319 324
    • (2014) Nat. Methods , vol.11 , pp. 319-324
    • Kulak, N.A.1    Pichler, G.2    Paron, I.3    Nagaraj, N.4    Mann, M.5
  • 18
    • 0025195764 scopus 로고
    • Structure and function of leukocyte integrins
    • R.S. Larson, and T.A. Springer Structure and function of leukocyte integrins Immunol. Rev. 114 1990 181 217
    • (1990) Immunol. Rev. , vol.114 , pp. 181-217
    • Larson, R.S.1    Springer, T.A.2
  • 19
    • 65649123336 scopus 로고    scopus 로고
    • Impact of asialoglycoprotein receptor deficiency on the development of liver injury
    • S.M. Lee, C.A. Casey, and B.L. McVicker Impact of asialoglycoprotein receptor deficiency on the development of liver injury World J. Gastroenterol. 15 2009 1194 1200
    • (2009) World J. Gastroenterol. , vol.15 , pp. 1194-1200
    • Lee, S.M.1    Casey, C.A.2    McVicker, B.L.3
  • 20
    • 2542564256 scopus 로고    scopus 로고
    • Accurate qualitative and quantitative proteomic analysis of clinical hepatocellular carcinoma using laser capture microdissection coupled with isotope-coded affinity tag and two-dimensional liquid chromatography mass spectrometry
    • C. Li, Y. Hong, Y.X. Tan, H. Zhou, J.H. Ai, S.J. Li, L. Zhang, Q.C. Xia, J.R. Wu, H.Y. Wang, and R. Zeng Accurate qualitative and quantitative proteomic analysis of clinical hepatocellular carcinoma using laser capture microdissection coupled with isotope-coded affinity tag and two-dimensional liquid chromatography mass spectrometry Mol. Cell. Proteomics 3 2004 399 409
    • (2004) Mol. Cell. Proteomics , vol.3 , pp. 399-409
    • Li, C.1    Hong, Y.2    Tan, Y.X.3    Zhou, H.4    Ai, J.H.5    Li, S.J.6    Zhang, L.7    Xia, Q.C.8    Wu, J.R.9    Wang, H.Y.10    Zeng, R.11
  • 21
    • 80051822117 scopus 로고    scopus 로고
    • Sample preparation method for isolation of single-cell types from mouse liver for proteomic studies
    • W. Liu, Y. Hou, H. Chen, H. Wei, W. Lin, J. Li, M. Zhang, F. He, and Y. Jiang Sample preparation method for isolation of single-cell types from mouse liver for proteomic studies Proteomics 11 2011 3556 3564
    • (2011) Proteomics , vol.11 , pp. 3556-3564
    • Liu, W.1    Hou, Y.2    Chen, H.3    Wei, H.4    Lin, W.5    Li, J.6    Zhang, M.7    He, F.8    Jiang, Y.9
  • 24
    • 79960976768 scopus 로고    scopus 로고
    • UniProt Knowledgebase: A hub of integrated protein data
    • Published online March 29, 2011
    • M. Magrane, and U. Consortium UniProt Knowledgebase: a hub of integrated protein data Database (Oxford) 2011 10.1093/database/bar009 Published online March 29, 2011
    • (2011) Database (Oxford)
    • Magrane, M.1    Consortium, U.2
  • 25
    • 84874232489 scopus 로고    scopus 로고
    • The coming age of complete, accurate, and ubiquitous proteomes
    • M. Mann, N.A. Kulak, N. Nagaraj, and J. Cox The coming age of complete, accurate, and ubiquitous proteomes Mol. Cell 49 2013 583 590
    • (2013) Mol. Cell , vol.49 , pp. 583-590
    • Mann, M.1    Kulak, N.A.2    Nagaraj, N.3    Cox, J.4
  • 29
    • 79961014854 scopus 로고    scopus 로고
    • Large-scale phosphosite quantification in tissues by a spike-in SILAC method
    • M. Monetti, N. Nagaraj, K. Sharma, and M. Mann Large-scale phosphosite quantification in tissues by a spike-in SILAC method Nat. Methods 8 2011 655 658
    • (2011) Nat. Methods , vol.8 , pp. 655-658
    • Monetti, M.1    Nagaraj, N.2    Sharma, K.3    Mann, M.4
  • 33
    • 63049110388 scopus 로고    scopus 로고
    • Comparative proteomic phenotyping of cell lines and primary cells to assess preservation of cell type-specific functions
    • C. Pan, C. Kumar, S. Bohl, U. Klingmueller, and M. Mann Comparative proteomic phenotyping of cell lines and primary cells to assess preservation of cell type-specific functions Mol. Cell. Proteomics 8 2009 443 450
    • (2009) Mol. Cell. Proteomics , vol.8 , pp. 443-450
    • Pan, C.1    Kumar, C.2    Bohl, S.3    Klingmueller, U.4    Mann, M.5
  • 34
    • 74549125753 scopus 로고    scopus 로고
    • An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data
    • D. Ramsköld, E.T. Wang, C.B. Burge, and R. Sandberg An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data PLoS Comput. Biol. 5 2009 e1000598
    • (2009) PLoS Comput. Biol. , vol.5 , pp. 1000598
    • Ramsköld, D.1    Wang, E.T.2    Burge, C.B.3    Sandberg, R.4
  • 35
    • 36048937343 scopus 로고    scopus 로고
    • Complement-targeted therapeutics
    • D. Ricklin, and J.D. Lambris Complement-targeted therapeutics Nat. Biotechnol. 25 2007 1265 1275
    • (2007) Nat. Biotechnol. , vol.25 , pp. 1265-1275
    • Ricklin, D.1    Lambris, J.D.2
  • 36
    • 84884376382 scopus 로고    scopus 로고
    • HDL endocytosis and resecretion
    • C. Röhrl, and H. Stangl HDL endocytosis and resecretion Biochim. Biophys. Acta 1831 2013 1626 1633
    • (2013) Biochim. Biophys. Acta , vol.1831 , pp. 1626-1633
    • Röhrl, C.1    Stangl, H.2
  • 37
    • 84857980282 scopus 로고    scopus 로고
    • Analysis of high accuracy, quantitative proteomics data in the MaxQB database
    • C. Schaab, T. Geiger, G. Stoehr, J. Cox, and M. Mann Analysis of high accuracy, quantitative proteomics data in the MaxQB database Mol. Cell. Proteomics 11 2012 10.1074/mcp.M111.014068
    • (2012) Mol. Cell. Proteomics , vol.11
    • Schaab, C.1    Geiger, T.2    Stoehr, G.3    Cox, J.4    Mann, M.5
  • 38
    • 33745769536 scopus 로고    scopus 로고
    • The emergence of ErbB2 expression in cultured rat hepatocytes correlates with enhanced and diversified EGF-mediated signaling
    • L.A. Scheving, L. Zhang, M.C. Stevenson, E.S. Kwak, and W.E. Russell The emergence of ErbB2 expression in cultured rat hepatocytes correlates with enhanced and diversified EGF-mediated signaling Am. J. Physiol. Gastrointest. Liver Physiol. 291 2006 G16 G25
    • (2006) Am. J. Physiol. Gastrointest. Liver Physiol. , vol.291 , pp. 16-G25
    • Scheving, L.A.1    Zhang, L.2    Stevenson, M.C.3    Kwak, E.S.4    Russell, W.E.5
  • 45
    • 5044232017 scopus 로고    scopus 로고
    • Liver regeneration: From myth to mechanism
    • R. Taub Liver regeneration: from myth to mechanism Nat. Rev. Mol. Cell Biol. 5 2004 836 847
    • (2004) Nat. Rev. Mol. Cell Biol. , vol.5 , pp. 836-847
    • Taub, R.1
  • 46
    • 77958557979 scopus 로고    scopus 로고
    • Antigen-presenting cell function in the tolerogenic liver environment
    • A.W. Thomson, and P.A. Knolle Antigen-presenting cell function in the tolerogenic liver environment Nat. Rev. Immunol. 10 2010 753 766
    • (2010) Nat. Rev. Immunol. , vol.10 , pp. 753-766
    • Thomson, A.W.1    Knolle, P.A.2
  • 47
    • 84863113109 scopus 로고    scopus 로고
    • Actin stress fibers - Assembly, dynamics and biological roles
    • S. Tojkander, G. Gateva, and P. Lappalainen Actin stress fibers - assembly, dynamics and biological roles J. Cell Sci. 125 2012 1855 1864
    • (2012) J. Cell Sci. , vol.125 , pp. 1855-1864
    • Tojkander, S.1    Gateva, G.2    Lappalainen, P.3
  • 49
    • 44949241584 scopus 로고    scopus 로고
    • Keeping blood clots at bay in sepsis
    • C. van't Veer, and T. van der Poll Keeping blood clots at bay in sepsis Nat. Med. 14 2008 606 608
    • (2008) Nat. Med. , vol.14 , pp. 606-608
    • Van'T Veer, C.1    Van Der Poll, T.2
  • 52
    • 84910081742 scopus 로고    scopus 로고
    • A 'proteomic ruler' for protein copy number and concentration estimation without spike-in standards
    • Published online September 15, 2014
    • J.R. Wis̈niewski, M.Y. Hein, J. Cox, and M. Mann A 'proteomic ruler' for protein copy number and concentration estimation without spike-in standards Mol. Cell. Proteomics 2014 Published online September 15, 2014
    • (2014) Mol. Cell. Proteomics
    • Wis̈niewski, J.R.1    Hein, M.Y.2    Cox, J.3    Mann, M.4
  • 54
    • 84870552826 scopus 로고    scopus 로고
    • Liver X receptor β and peroxisome proliferator-activated receptor δ regulate cholesterol transport in murine cholangiocytes
    • X. Xia, D. Jung, P. Webb, A. Zhang, B. Zhang, L. Li, S.D. Ayers, C. Gabbi, Y. Ueno, and J.A. Gustafsson Liver X receptor β and peroxisome proliferator-activated receptor δ regulate cholesterol transport in murine cholangiocytes Hepatology 56 2012 2288 2296
    • (2012) Hepatology , vol.56 , pp. 2288-2296
    • Xia, X.1    Jung, D.2    Webb, P.3    Zhang, A.4    Zhang, B.5    Li, L.6    Ayers, S.D.7    Gabbi, C.8    Ueno, Y.9    Gustafsson, J.A.10
  • 55
    • 12244300698 scopus 로고    scopus 로고
    • A dataset of human liver proteins identified by protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry
    • W. Yan, H. Lee, E.W. Deutsch, C.A. Lazaro, W.L. Tang, E. Chen, N. Fausto, M.G. Katze, and R. Aebersold A dataset of human liver proteins identified by protein profiling via isotope-coded affinity tag (ICAT) and tandem mass spectrometry Mol. Cell. Proteomics 3 2004 1039 1041
    • (2004) Mol. Cell. Proteomics , vol.3 , pp. 1039-1041
    • Yan, W.1    Lee, H.2    Deutsch, E.W.3    Lazaro, C.A.4    Tang, W.L.5    Chen, E.6    Fausto, N.7    Katze, M.G.8    Aebersold, R.9
  • 56
    • 84877139427 scopus 로고    scopus 로고
    • Hepatic stellate cells in liver development, regeneration, and cancer
    • C. Yin, K.J. Evason, K. Asahina, and D.Y. Stainier Hepatic stellate cells in liver development, regeneration, and cancer J. Clin. Invest. 123 2013 1902 1910
    • (2013) J. Clin. Invest. , vol.123 , pp. 1902-1910
    • Yin, C.1    Evason, K.J.2    Asahina, K.3    Stainier, D.Y.4


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