Prevalence and diversity of mycoviruses infecting the plant pathogen Ustilaginoidea virens

Virus Research

Volumn 195, Issue , 2015, Pages 47-56

  Jiang, Yinhui ^a   Zhang, Tingting ^a   Luo, Chaoxi ^a   Jiang, Daohong ^a   Li, Guoqing ^a   Li, Qili ^b   Hsiang, Tom ^c   Huang, Junbin ^a  

^a HUAZHONG AGRICULTURAL UNIVERSITY   (China)

^b NATIONAL ENGINEERING RESEARCH CENTER FOR NON FOOD BIOREFINERY   (China)

^c UNIVERSITY OF GUELPH   (Canada)

Author keywords

Diversity; DsRNA; Mycovirus; Prevalence; Ustilaginoidea virens

Indexed keywords

ARTICLE; CURVULARIA; HEAT TOLERANCE; MICROBIAL DIVERSITY; MIXED INFECTION; MYCOVIRUS; NONHUMAN; NORTHERN BLOTTING; NUCLEOTIDE SEQUENCE; PLANT DISEASE; PREVALENCE; RNA VIRUS; TOTIVIRIDAE; USTILAGINOIDEA; USTILAGINOIDEA VIRENS; VIRUS INFECTION; WILD TYPE; CHEMICAL STRUCTURE; CHINA; CLASSIFICATION; CLUSTER ANALYSIS; CONFORMATION; DNA SEQUENCE; GENETICS; HYPOCREALES; ISOLATION AND PURIFICATION; MICROBIOLOGY; MOLECULAR GENETICS; PHYLOGENY; RICE; SEQUENCE HOMOLOGY; VIROLOGY;

CURVULARIA; PARTITIVIRIDAE; RNA VIRUSES; TOTIVIRIDAE; USTILAGINOIDEA VIRENS;

VIRUS RNA;

CHINA; CLUSTER ANALYSIS; HYPOCREALES; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; ORYZA SATIVA; PHYLOGENY; PLANT DISEASES; PREVALENCE; RNA VIRUSES; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY;

EID: 84919389055     PISSN: 01681702     EISSN: 18727492     Source Type: Journal    
DOI: 10.1016/j.virusres.2014.08.022     Document Type: Article

References (62)

1. Adams M., Antoniw J., Fauquet C. Molecular criteria for genus and species discrimination within the family Potyviridae. Arch. Virol. 2005, 150:459-479.
2. Arakawa M., Nakamura H., Uetake Y., Matsumoto N. Presence and distribution of double-stranded RNA elements in the white root rot fungus Rosellinia necatrix. Mycoscience 2002, 43:21-26.
3. Bhatti M.F., Bignell E.M., Coutts R.H. Complete nucleotide sequences of two dsRNAs associated with a new partitivirus infecting Aspergillus fumigatus. Arch. Virol. 2011, 156:1677-1680.
4. Biswas A. False smut disease of rice. Environ. Ecol. 2001, 19:67-83.
5. Bottacin A.M., Levesque C.A., Punja Z.K. Characterization of dsRNA in Chalara elegans and effects on growth and virulence. Phytopathology 1994, 84:303-312.
6. Bruenn J.A. A closely related group of RNA-dependent RNA polymerases from double-stranded RNA viruses. Nucleic Acids Res. 1993, 21:5667-5669.
7. Dodds J., Bar-Joseph M. Double-stranded RNA from plants infected with closteroviruses. Phytopathology 1983, 73:419-423.
8. Enebak S.A., MacDonald W.L., Hillman B.I. Effect of dsRNA associated with isolates of Cryphonectria parasitica from the central Appalachians and their relatedness to other dsRNAs from North America and Europe. Phytopathology 1994, 84:528-534.
9. Esteban R., Vega L., Fujimura T. 20S RNA narnavirus defies the antiviral activity of SKI1/XRN1 in Saccharomyces cerevisiae. J. Biol. Chem. 2008, 283:25812-25820.
10. Froussard P. rPCR: a powerful tool for random amplification of whole RNA sequences. Genome Res. 1993, 2:185-190.
11. Ghabrial S.A., Ochoa W., Baker T., Nibert M. Partitiviruses: general features. Encycl. Virol. 2008, 5:68-75.
12. Ghabrial S.A. Origin, adaptation and evolutionary pathways of fungal viruses. Virus Genes 1998, 16:119-131.
13. Ghabrial S.A., Suzuki N. Fungal viruses. Encycl. Virol. 2008, 2:284-291.
14. Ghabrial S.A., Nibert M.L. Victorivirus, a new genus of fungal viruses in the family Totiviridae. Arch. Virol. 2009, 154:373-379.
15. Ghabrial S.A., Suzuki N. Viruses of plant pathogenic fungi. Ann. Rev. Phytopathol. 2009, 47:353-384.
16. Herrero N., Dueñas E., Moraga E.Q., Zabalgogeazcoa I. Prevalence and diversity of viruses in the entomopathogenic fungus Beauveria bassiana. Appl. Environ. Microbiol. 2012, 78:8523-8530.
17. Herrero N., Zabalgogeazcoa I. Mycoviruses infecting the endophytic and entomopathogenic fungus Tolypocladium cylindrosporum. Virus Res. 2011, 160:409-413.
18. Hillman B.I., Cai G. The family Narnaviridae: simplest of RNA viruses. Adv. Virus Res. 2013, 86:149-176.
19. Hong Y., Dover S.L., Cole T.E., Brasier C.M., Buck K.W. Multiple mitochondrial viruses in an isolate of the Dutch elm disease fungus Ophiostoma novoulmi. Virology 1999, 258:118-127.
20. Huang C.-H., Lu C.L., Chiu H.-T. A heuristic approach for detecting RNA H-type pseudoknots. Bioinformatics 2005, 21:3501-3508.
21. Hunst P.L., Latterell F.M., Rossi A.E. Variation in double-stranded RNA from isolates of Pyricularia oryzae. Phytopathology 1986, 76:674-678.
22. Ihrmark K. Double-stranded RNA elements in the root rot fungus Heterobasidion annosum 2001, (PhD Dissertation), Department of Forest Mycology and Pathology, Swedish University of Agricultural Sciences, Uppsala, (ISBN 91-576-6094-8).
23. Ihrmark K., Johannesson H., Stenström E., Stenlid J. Transmission of double-stranded RNA in Heterobasidion annosum. Fungal Genet. Biol. 2002, 36:147-154.
24. Ikeda K., Nakamura H., Arakawa M., Matsumoto N. Diversity and vertical transmission of double-stranded RNA elements in root rot pathogens of trees, Helicobasidium mompa and Rosellinia necatrix. Mycol. Res. 2004, 108:626-634.
25. Jiang Y., Luo C., Jiang D., Li G., Huang J. The complete genomic sequence of a second novel partitivirus infecting Ustilaginoidea virens. Arch. Virol. 2014, 10.1007/s00705-014-1991-9.
26. King A.M., Adams M.J., Lefkowitz E.J., Carstens E.B. Virus Taxonomy: Ninth Report of the International Committee on Taxonomy of Viruses 2012, Elsevier, Amsterdam.
27. Koiso Y., Li Y., Iwasaki S., Hanaoka K., Kobayashi T., Sonoda R., Fujita Y., Yaegashi H., Sato Z. Ustiloxins, antimitotic cyclic peptides from false smut balls on rice panicles caused by Ustilaginoidea virens. J. Antibiot. 1994, 47:765-773.
28. Li H., Havens W.M., Nibert M.L., Ghabrial S.A. RNA sequence determinants of a coupled termination-reinitiation strategy for downstream open reading frame translation in Helminthosporium victoriae virus 190S and other victoriviruses (Family Totiviridae). J. Virol. 2011, 85:7343-7352.
29. Li Y., Koiso Y., Kobayashi H., Hashimoto Y., Iwasaki S. Ustiloxins, new antimitotic cyclic peptides: interaction with porcine brain tubulin. Biochem. Pharmacol. 1995, 49:1367-1372.
30. Márquez L.M., Redman R.S., Rodriguez R.J., Roossinck M.J. A virus in a fungus in a plant: three-way symbiosis required for thermal tolerance. Science 2007, 315:513-515.
31. Mathews D.H., Disney M.D., Childs J.L., Schroeder S.J., Zuker M., Turner D.H. Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc. Natl. Acad. Sci. U. S. A. 2004, 101:7287-7292.
32. Melzer M.S., Dunn M., Zhou T., Boland G.J. Assessment of hypovirulent isolates of Cryphonectria parasitica for potential in biological control of chestnut blight. Can. J. Plant Pathol. 1997, 19:69-77.
33. Morris T., Dodds J. Isolation and analysis of double-stranded RNA from virus-infected plant and fungal tissue. Phytopathology 1979, 69:855.
34. Nibert M.L., Ghabrial S.A., Maiss E., Lesker T., Vainio E.J., Jiang D., Suzuki N. Taxonomic reorganization of family Partitiviridae and other recent progress in partitivirus research. Virus Res. 2014, 188:128-141.
35. Osada S. Effect of false smut occurrence on yield and quality of rice. Annual Report of the Society of Plant Protection of North Japan 1995, vol. 46:30-32.
36. Osaki H., Nakamura H., Sasaki A., Matsumoto N., Yoshida K. An endornavirus from a hypovirulent strain of the violet root rot fungus, Helicobasidium mompa. Virus Res. 2006, 118:143-149.
37. Parker W.B. Metabolism and antiviral activity of ribavirin. Virus Res. 2005, 107:165-171.
38. Park Y., Chen X., Punja Z.K. Diversity, complexity and transmission of double-stranded RNA elements in Chalara elegans (synanam. Thielaviopsis basicola). Mycol. Res. 2006, 110:697-704.
39. Park Y., James D., Punja Z.K. Co-infection by two distinct totivirus-like double-stranded RNA elements in Chalara elegans (Thielaviopsis basicola). Virus Res. 2005, 109:71-85.
40. Pearson M.N., Beever R.E., Boine B., Arthur K. Mycoviruses of filamentous fungi and their relevance to plant pathology. Mol. Plant Pathol. 2009, 10:115-128.
41. Peever T.L., Liu Y.C., Milgroom M.G. Diversity of hypoviruses and other double-stranded RNAs in Cryphonectria parasitica in North America. Phytopathology 1997, 87:1026-1033.
42. Petisco C., Vázquez-de-Aldana B., García-Criado B., Zabalgogeazcoa I. Incidence of Epichloë festucae in Festuca rubra plants of natural grasslands and presence of double-stranded RNA fungal viruses. Grassland in a changing world. Proceedings of the 23rd General Meeting of the European Grassland Federation 2010, Germany, Kiel. H. Schnyder, J. Isselstein, F. Taube, K. Auerswald, J. Schellberg, M. Wachendorf, A. Herrmann, M. Gierus, N. Wrage, A. Hopkins (Eds.).
43. Potgieter A.C., Page N.A., Liebenberg J., Wright I.M., Landt O., van Dijk A.A. Improved strategies for sequence-independent amplification and sequencing of viral double-stranded RNA genomes. J. Gen. Virol. 2009, 90:1423-1432.
44. Reuter J.S., Mathews D.H. RNAstructure: software for RNA secondary structure prediction and analysis. BMC Bioinform. 2010, 11:129.
45. Romo M., Leuchtmann A., García B., Zabalgogeazcoa I. A totivirus infecting the mutualistic fungal endophyte Epichloë festucae. Virus Res. 2007, 124:38-43.
46. Rong R., Rao S., Scott S.W., Tainter F.H. Common multiple dsRNAs are present in populations of the fungus Discula destructiva originating from widely separated geographic locations. Curr. Microbiol. 2001, 42:144-148.
47. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28:2731-2739.
48. Tanaka E., Ashizawa T., Sonoda R., Tanaka C. Villosiclava virens gen. nov., comb. nov., the teleomorph of Ustilaginoidea virens, the causal agent of rice false smut. Mycotaxon 2008, 106:491-501.
49. Tuomivirta T.T., Hantula J. Three unrelated viruses occur in a single isolate of Gremmeniella abietina var. abietina type A. Virus Res. 2005, 110:31-39.
50. Vainio E.J., Hyder R., Aday G., Hansen E., Piri T., Doğmuş-Lehtijärvi T., Lehtijärvi A., Korhonen K., Hantula J. Population structure of a novel putative mycovirus infecting the conifer root-rot fungus Heterobasidion annosum sensu lato. Virology 2012, 422:366-376.
51. Vainio E.J., Hakanpää J., Dai Y.C., Hansen E., Korhonen K., Hantula J. Species of Heterobasidion host a diverse pool of partitiviruses with global distribution and interspecies transmission. Fungal Biol. 2011, 115:1234-1243.
52. Wang D., Wang S., Fu S. Research advance on false smut of rice. Liaoning Agric. Sci. 2004, 2004:21-24.
53. Wickner R.B., Ghabrial S.A., Nibert M.L., Patterson J.L., Wang C.C. Family Totiviridae. Virus Taxonomy: Ninth Report of the International Committee on Taxonomy of Viruses 2011, 639-650. Elsevier Inc., Amsterdam. A.M.Q. King, M.J. Adams, E.B. Carstens, E.J. Lefkowitz (Eds.).
54. Wu M., Zhang L., Li G., Jiang D., Hou M., Huang H.-C. Hypovirulence and double-stranded RNA in Botrytis cinerea. Phytopathology 2007, 97:1590-1599.
55. Yu J., Kwon S.-J., Lee K.-M., Son M., Kim K.-H. Complete nucleotide sequence of double-stranded RNA viruses from Fusarium graminearum strain DK3. Arch. Virol. 2009, 154:1855-1858.
56. Yu X., Li B., Fu Y., Jiang D., Ghabrial S.A., Li G., Peng Y., Xie J., Cheng J., Huang J. A geminivirus-related DNA mycovirus that confers hypovirulence to a plant pathogenic fungus. Proc. Natl. Acad. Sci. 2010, 107:8387-8392.
57. Zhang T., Jiang Y., Huang J., Dong W. Complete genome sequence of a putative novel victorivirus from Ustilaginoidea virens. Arch. Virol. 2013, 6:1403-1406.
58. Zhang T., Jiang Y., Huang J., Dong W. Genomic organization of a novel partitivirus from the phytopathogenic fungus Ustilaginoidea virens. Arch. Virol. 2013, 11:2415-2419.
59. Zhang T., Jiang Y., Dong W. A novel monopartite dsRNA virus isolated from the phytopathogenic fungus Ustilaginoidea virens and ancestrally related to a mitochondria-associated dsRNA in the green alga Bryopsis. Virology 2014, 462:227-235.
60. Zheng L., Liu H., Zhang M., Cao X., Zhou E. The complete genomic sequence of a novel mycovirus from Rhizoctonia solani AG-1 IA strain B275. Arch. Virol. 2013, 7:1609-1612.
61. Zhong J., Zhou Q., Lei X.H., Chen D., Shang H.H., Zhu H.J. The nucleotide sequence and genome organization of two victoriviruses from the rice false smut fungus Ustilaginoidea virens. Virus Genes 2014, 10.1007/s11262-014-1050-3.
62. Zhong J., Zhu J.-Z., Lei X.-H., Chen D., Zhu H.-J., Gao B.-D. Complete genome sequence and organization of a novel virus from the rice false smut fungus Ustilaginoidea virens. Virus Genes 2014, 10.1007/s11262-013-1022-z.