Genomic and phylogenetic characterization of Shuni virus

Archives of Virology

Volumn 159, Issue 11, 2014, Pages 2883-2892

  van Eeden, Charmaine ^a   Harders, Frank ^b   Kortekaas, Jeroen ^b   Bossers, Alex ^b   Venter, Marietjie ^a,c  

^a UNIVERSITY OF PRETORIA   (South Africa)

^b WAGENINGEN UNIVERSITY   (Netherlands)

^c Global AIDS Programs   (South Africa)

Author keywords

[No Author keywords available]

Indexed keywords

BOVINAE; EQUIDAE; ORTHOBUNYAVIRUS; SHUNI VIRUS;

VIRUS PROTEIN;

AMINO ACID SEQUENCE; ANIMAL; BOVINAE; BUNYAVIRUS INFECTION; CATTLE DISEASE; CHEMISTRY; CLASSIFICATION; GENETICS; GENOMICS; HORSE; HORSE DISEASE; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR GENETICS; ORTHOBUNYAVIRUS; PHYLOGENY; SEQUENCE ALIGNMENT; SOUTH AFRICA; VETERINARY; VIROLOGY; VIRUS GENOME;

AMINO ACID SEQUENCE; ANIMALS; BUNYAVIRIDAE INFECTIONS; CATTLE; CATTLE DISEASES; GENOME, VIRAL; GENOMICS; HORSE DISEASES; HORSES; MOLECULAR SEQUENCE DATA; ORTHOBUNYAVIRUS; PHYLOGENY; SEQUENCE ALIGNMENT; SOUTH AFRICA; VIRAL PROTEINS;

EID: 84919383728     PISSN: 03048608     EISSN: 14328798     Source Type: Journal    
DOI: 10.1007/s00705-014-2131-2     Document Type: Article

References (39)

1. Moore DL et al (1975) Arthropod-borne viral infections in man in Nigeria: 1964-1970. Ann Trop Med Parasitol 69:49–64
2. Causey OR et al (1972) Isolations of Simbu-group viruses in Ibadan, Nigeria 1964-69, including the new types Sango, Shamonda, Sabo and Shuni. Ann Trop Med Parasitol 66(3):357–362
3. Goller KV et al (2012) Schmallenberg virus as possible ancestor of Shamonda virus. Emerg Infect Dis 18(10):1644–1646
4. van Eeden C et al (2012) Shuni virus as cause of neurologic disease in horses. Emerg Infect Dis 18(2):318–321
5. Elliott RM (1990) Molecular biology of the Bunyaviridae. J Gen Virol 71(Pt 3):501–522
6. Fazakerley JK et al (1988) Organization of the middle RNA segment of snowshoe hare Bunyavirus. Virology 167(2):422–432
7. Fuller F, Bhown AS, Bishop DH (1983) Bunyavirus nucleoprotein, N, and a non-structural protein, NSS, are coded by overlapping reading frames in the S RNA. J Gen Virol 64(Pt 8):1705–1714
8. Saeed MF et al (2001) Phylogeny of the Simbu serogroup of the genus Bunyavirus. J Gen Virol 82:2173–2181
9. Yanase T et al (2003) Sequence analysis of the medium RNA segment of three Simbu serogroup viruses, Akabane, Aino, and Peaton viruses. Virus Res 93(1):63–69
10. Ogawa Y et al (2007) Sequence determination and functional analysis of the Akabane virus (family Bunyaviridae) L RNA segment. Arch Virol 152(5):971–979
11. Briese T et al (2006) Batai and Ngari viruses: M segment reassortment and association with severe febrile disease outbreaks in East Africa. J Virol 80(11):5627–5630
12. Yanase T et al (2006) Genetic characterization of Batai virus indicates a genomic reassortment between orthobunyaviruses in nature. Arch Virol 151(11):2253–2260
13. Kobayashi T et al (2007) Genetic diversity and reassortments among Akabane virus field isolates. Virus Res 130(1–2):162–171
14. Saeed MF et al (2001) Jatobal virus is a reassortant containing the small RNA of Oropouche virus. Virus Res 77(1):25–30
15. Yanase T et al (2010) Genetic characterization of Aino and Peaton virus field isolates reveals a genetic reassortment between these viruses in nature. Virus Res 153(1):1–7
16. Langmead B, Salzberg SL (2012) Fast gapped-read alignment with Bowtie 2. Nat Methods 9(4):357–359
17. Jones DT, Taylor WR, Thornton JM (1992) The rapid generation of mutation data matrices from protein sequences. Comput Appl Biosci 8(3):275–282
18. Tamura K et al (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739
19. Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22(22):4673–4680
20. Nei M, Gojobori T (1986) Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions. Mol Biol Evol 3(5):418–426
21. Eifan SA, Elliott RM (2009) Mutational analysis of the Bunyamwera orthobunyavirus nucleocapsid protein gene. J Virol 83(21):11307–11317
22. Bridgen A et al (2001) Bunyamwera bunyavirus nonstructural protein NSs is a nonessential gene product that contributes to viral pathogenesis. Proc Natl Acad Sci USA 98(2):664–669
23. Muller R et al (1995) Characterization of clone 13, a naturally attenuated avirulent isolate of Rift Valley fever virus, which is altered in the small segment. Am J Trop Med Hyg 53(4):405–411
24. Varela M et al (2013) Schmallenberg virus pathogenesis, tropism and interaction with the innate immune system of the host. PLoS Pathog 9(1):e1003133
25. Briese T, Kapoor V, Lipkin WI (2007) Natural M-segment reassortment in Potosi and Main Drain viruses: implications for the evolution of orthobunyaviruses. Arch Virol 152(12):2237–2247
26. Briese T, Rambaut A, Lipkin WI (2004) Analysis of the medium (M) segment sequence of Guaroa virus and its comparison to other orthobunyaviruses. J Gen Virol 85(Pt 10):3071–3077
27. Pollitt E et al (2006) Characterization of Maguari orthobunyavirus mutants suggests the nonstructural protein NSm is not essential for growth in tissue culture. Virology 348(1):224–232
28. Savji N et al (2011) Genomic and phylogenetic characterization of Leanyer virus, a novel orthobunyavirus isolated in northern Australia. J Gen Virol 92(Pt 7):1676–1687
29. Pekosz A et al (1995) Protection from La Crosse virus encephalitis with recombinant glycoproteins: role of neutralizing anti-G1 antibodies. J Virol 69(6):3475–3481
30. Reguera J, Weber F, Cusack S (2010) Bunyaviridae RNA polymerases (L-protein) have an N-terminal, influenza-like endonuclease domain, essential for viral cap-dependent transcription. PLoS Pathog 6(9):e1001101
31. Elliott RM, Schmaljohn CS, Collett MS (1991) Bunyaviridae genome structure and gene expression. Curr Top Microbiol Immunol 169:91–141
32. Fauquet CM, Fargette D (2005) International Committee on Taxonomy of Viruses and the 3,142 unassigned species. Virol J 2:64
33. Barr JN et al (2003) Segment-specific terminal sequences of Bunyamwera bunyavirus regulate genome replication. Virology 311(2):326–338
34. Barr JN, Wertz GW (2004) Bunyamwera bunyavirus RNA synthesis requires cooperation of 3’- and 5’-terminal sequences. J Virol 78(3):1129–1138
35. Kohl A et al (2006) Genetic elements regulating packaging of the Bunyamwera orthobunyavirus genome. J Gen Virol 87(Pt 1):177–187
36. Akashi H et al (1997) Sequence determination and phylogenetic analysis of the Akabane bunyavirus S RNA genome segment. J Gen Virol 78(Pt 11):2847–2851
37. Matsumori Y et al (2002) Serological and genetic characterization of newly isolated Peaton virus in Japan. Brief report. Arch Virol 147(2):401–410
38. Lee E et al (2000) Mutagenesis of the signal sequence of yellow fever virus prM protein: enhancement of signalase cleavage In vitro is lethal for virus production. J Virol 74(1):24–32
39. Botha EM et al (2008) Genetic determinants of virulence in pathogenic lineage 2 west nile virus strains. Emerg Infect Dis 14(2):222–230