메뉴 건너뛰기




Volumn 104, Issue 6, 2014, Pages 472-476

Cox regression model for dissecting genetic architecture of survival time

Author keywords

Cox regression model; LASSO; Partial likelihood algorithm; QTL; Survival time

Indexed keywords

ARTICLE; GENETIC TRAIT; INTERMETHOD COMPARISON; LEAST ABSOLUTE SHRINKAGE AND SELECTION OPERATOR; PROPORTIONAL HAZARDS MODEL; QUANTITATIVE TRAIT LOCUS; QUANTITATIVE TRAIT LOCUS MAPPING; STATISTICAL ANALYSIS; STATISTICAL MODEL; SURVIVAL TIME; BIOLOGICAL MODEL; CHROMOSOME MAP; GENETICS; GROWTH, DEVELOPMENT AND AGING; HORDEUM; PLANT DEVELOPMENT; PLANT GENOME; PROCEDURES; QUANTITATIVE TRAIT; REGRESSION ANALYSIS;

EID: 84918811734     PISSN: 08887543     EISSN: 10898646     Source Type: Journal    
DOI: 10.1016/j.ygeno.2014.10.002     Document Type: Article
Times cited : (6)

References (32)
  • 2
    • 0037356574 scopus 로고    scopus 로고
    • Mapping quantitative trait loci in the case of a spike in the phenotype distribution
    • Broman K.W. Mapping quantitative trait loci in the case of a spike in the phenotype distribution. Genetics 2003, 163:1169-1175.
    • (2003) Genetics , vol.163 , pp. 1169-1175
    • Broman, K.W.1
  • 4
    • 0031708309 scopus 로고    scopus 로고
    • Estimating equations with incomplete categorical covariates in the Cox model
    • Lipsitz S.R., Ibrahim J.G. Estimating equations with incomplete categorical covariates in the Cox model. Biometrics 1998, 1002-1013.
    • (1998) Biometrics , pp. 1002-1013
    • Lipsitz, S.R.1    Ibrahim, J.G.2
  • 5
    • 10844238914 scopus 로고    scopus 로고
    • Mapping quantitative trait loci with censored observations
    • Diao G., Lin D., Zou F. Mapping quantitative trait loci with censored observations. Genetics 2004, 168:1689-1698.
    • (2004) Genetics , vol.168 , pp. 1689-1698
    • Diao, G.1    Lin, D.2    Zou, F.3
  • 6
    • 27744450835 scopus 로고    scopus 로고
    • Semiparametric methods for mapping quantitative trait loci with censored data
    • Diao G., Lin D. Semiparametric methods for mapping quantitative trait loci with censored data. Biometrics 2005, 61:789-798.
    • (2005) Biometrics , vol.61 , pp. 789-798
    • Diao, G.1    Lin, D.2
  • 7
    • 33645781093 scopus 로고    scopus 로고
    • A note on QTL detecting for censored traits
    • Fang Y. A note on QTL detecting for censored traits. Genet. Sel. Evol. 2006, 38:221.
    • (2006) Genet. Sel. Evol. , vol.38 , pp. 221
    • Fang, Y.1
  • 8
    • 22144484446 scopus 로고    scopus 로고
    • Interval mapping methods for detecting QTL affecting survival and time-to-event phenotypes
    • Moreno C., Elsen J., Le Roy P., Ducrocq V. Interval mapping methods for detecting QTL affecting survival and time-to-event phenotypes. Genet. Res. 2005, 85:139-150.
    • (2005) Genet. Res. , vol.85 , pp. 139-150
    • Moreno, C.1    Elsen, J.2    Le Roy, P.3    Ducrocq, V.4
  • 9
    • 79957508129 scopus 로고    scopus 로고
    • Generalized F accelerated failure time model for mapping survival trait loci
    • Zhou X., Yan L., Prows D.R., Yang R. Generalized F accelerated failure time model for mapping survival trait loci. Genomics 2011, 97:379-385.
    • (2011) Genomics , vol.97 , pp. 379-385
    • Zhou, X.1    Yan, L.2    Prows, D.R.3    Yang, R.4
  • 10
    • 79952445421 scopus 로고    scopus 로고
    • Statistical optimization of parametric accelerated failure time model for mapping survival trait loci
    • Piao Z., Zhou X., Yan L., Guo Y., Yang R., Luo Z., Prows D.R. Statistical optimization of parametric accelerated failure time model for mapping survival trait loci. Theor. Appl. Genet. 2011, 122:855-863.
    • (2011) Theor. Appl. Genet. , vol.122 , pp. 855-863
    • Piao, Z.1    Zhou, X.2    Yan, L.3    Guo, Y.4    Yang, R.5    Luo, Z.6    Prows, D.R.7
  • 11
    • 60349096562 scopus 로고    scopus 로고
    • Parametric and semiparametric methods for mapping quantitative trait loci
    • Cheng J.-Y., Tzeng S.-J. Parametric and semiparametric methods for mapping quantitative trait loci. Comput. Stat. Data Anal. 2009, 53:1843-1849.
    • (2009) Comput. Stat. Data Anal. , vol.53 , pp. 1843-1849
    • Cheng, J.-Y.1    Tzeng, S.-J.2
  • 13
    • 35549004413 scopus 로고    scopus 로고
    • Derivation of the shrinkage estimates of quantitative trait locus effects
    • Xu S. Derivation of the shrinkage estimates of quantitative trait locus effects. Genetics 2007, 177:1255-1258.
    • (2007) Genetics , vol.177 , pp. 1255-1258
    • Xu, S.1
  • 14
    • 79957462119 scopus 로고    scopus 로고
    • Methods of plant breeding in the genome era
    • Xu S., Hu Z. Methods of plant breeding in the genome era. Genet. Res. 2011, 92:423.
    • (2011) Genet. Res. , vol.92 , pp. 423
    • Xu, S.1    Hu, Z.2
  • 16
    • 34250748097 scopus 로고    scopus 로고
    • Bayesian shrinkage analysis of quantitative trait loci for dynamic traits
    • Yang R., Xu S. Bayesian shrinkage analysis of quantitative trait loci for dynamic traits. Genetics 2007, 176:1169-1185.
    • (2007) Genetics , vol.176 , pp. 1169-1185
    • Yang, R.1    Xu, S.2
  • 17
    • 79957481980 scopus 로고    scopus 로고
    • Fast empirical Bayesian LASSO for multiple quantitative trait locus mapping
    • Cai X., Anhui H., Shizhong X. Fast empirical Bayesian LASSO for multiple quantitative trait locus mapping. BMC Bioinforma. 2011, 12.
    • (2011) BMC Bioinforma. , vol.12
    • Cai, X.1    Anhui, H.2    Shizhong, X.3
  • 18
    • 29144459062 scopus 로고    scopus 로고
    • Efficient empirical Bayes variable selection and estimation in linear models
    • Yuan M., Lin Y. Efficient empirical Bayes variable selection and estimation in linear models. J. Am. Stat. Assoc. 2005, 100:1215-1225.
    • (2005) J. Am. Stat. Assoc. , vol.100 , pp. 1215-1225
    • Yuan, M.1    Lin, Y.2
  • 19
    • 85194972808 scopus 로고    scopus 로고
    • Regression shrinkage and selection via the lasso
    • Tibshirani R. Regression shrinkage and selection via the lasso. J. R. Stat. Soc. Ser. B Methodol. 1996, 267-288.
    • (1996) J. R. Stat. Soc. Ser. B Methodol. , pp. 267-288
    • Tibshirani, R.1
  • 20
    • 84892951342 scopus 로고    scopus 로고
    • Iteratively reweighted LASSO for mapping multiple quantitative trait loci
    • Liu Y., Yang T., Li H., Yang R. Iteratively reweighted LASSO for mapping multiple quantitative trait loci. Brief. Bioinform. 2014, 15:20-29.
    • (2014) Brief. Bioinform. , vol.15 , pp. 20-29
    • Liu, Y.1    Yang, T.2    Li, H.3    Yang, R.4
  • 21
    • 77950537175 scopus 로고    scopus 로고
    • Regularization paths for generalized linear models via coordinate descent
    • Friedman J., Hastie T., Tibshirani R. Regularization paths for generalized linear models via coordinate descent. J. Stat. Softw. 2010, 33:1.
    • (2010) J. Stat. Softw. , vol.33 , pp. 1
    • Friedman, J.1    Hastie, T.2    Tibshirani, R.3
  • 22
    • 79952934063 scopus 로고    scopus 로고
    • Regularization paths for Cox's proportional hazards model via coordinate descent
    • Simon N., Friedman J., Hastie T., Tibshirani R. Regularization paths for Cox's proportional hazards model via coordinate descent. J. Stat. Softw. 2011, 39:1-13.
    • (2011) J. Stat. Softw. , vol.39 , pp. 1-13
    • Simon, N.1    Friedman, J.2    Hastie, T.3    Tibshirani, R.4
  • 23
    • 33646942472 scopus 로고
    • A simple regression method for mapping quantitative trait loci in line crosses using flanking markers
    • Haley C.S., Knott S.A. A simple regression method for mapping quantitative trait loci in line crosses using flanking markers. Heredity (Edinb) 1992, 69:315-324.
    • (1992) Heredity (Edinb) , vol.69 , pp. 315-324
    • Haley, C.S.1    Knott, S.A.2
  • 25
    • 33645035051 scopus 로고    scopus 로고
    • Model selection and estimation in regression with grouped variables
    • Yuan M., Lin Y. Model selection and estimation in regression with grouped variables. J. R. Stat. Soc. Ser. B Stat. Methodol. 2007, 68:49-67.
    • (2007) J. R. Stat. Soc. Ser. B Stat. Methodol. , vol.68 , pp. 49-67
    • Yuan, M.1    Lin, Y.2
  • 26
    • 0028151261 scopus 로고
    • Empirical threshold values for quantitative trait mapping
    • Churchill G.A., Doerge R.W. Empirical threshold values for quantitative trait mapping. Genetics 1994, 138:963-971.
    • (1994) Genetics , vol.138 , pp. 963-971
    • Churchill, G.A.1    Doerge, R.W.2
  • 27
    • 19944372078 scopus 로고    scopus 로고
    • Generating survival times to simulate Cox proportional hazards models
    • Bender R., Augustin T., Blettner M. Generating survival times to simulate Cox proportional hazards models. Stat. Med. 2005, 24:1713-1723.
    • (2005) Stat. Med. , vol.24 , pp. 1713-1723
    • Bender, R.1    Augustin, T.2    Blettner, M.3
  • 29
    • 0017709268 scopus 로고
    • The asymptotic information in censored survival data
    • Oakes D. The asymptotic information in censored survival data. Biometrika 1977, 64:441-448.
    • (1977) Biometrika , vol.64 , pp. 441-448
    • Oakes, D.1
  • 30
    • 62549142748 scopus 로고    scopus 로고
    • Hierarchical generalized linear models for multiple quantitative trait locus mapping
    • Yi N., Banerjee S. Hierarchical generalized linear models for multiple quantitative trait locus mapping. Genetics 2009, 181:1101-1113.
    • (2009) Genetics , vol.181 , pp. 1101-1113
    • Yi, N.1    Banerjee, S.2
  • 31
    • 84872661184 scopus 로고    scopus 로고
    • Parametric proportional hazards model for mapping genomic imprinting of survival traits
    • Gao H., Liu Y., Zhang T., Yang R., Prows D.R. Parametric proportional hazards model for mapping genomic imprinting of survival traits. J. Appl. Genet. 2013, 54:79-88.
    • (2013) J. Appl. Genet. , vol.54 , pp. 79-88
    • Gao, H.1    Liu, Y.2    Zhang, T.3    Yang, R.4    Prows, D.R.5
  • 32
    • 84918769775 scopus 로고    scopus 로고
    • An optimal parametric proportional hazards model for mapping heading time loci in rice
    • Luo Z., Piao Z., Zhou X., Yang T., Yang R. An optimal parametric proportional hazards model for mapping heading time loci in rice. Euphytica 2012, 1-8.
    • (2012) Euphytica , pp. 1-8
    • Luo, Z.1    Piao, Z.2    Zhou, X.3    Yang, T.4    Yang, R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.