Crassisporium and Romagnesiella: Two new genera of dark-spored Agaricales

Systematics and Biodiversity

Volumn 13, Issue 1, 2015, Pages 28-41

  Matheny, P Brandon ^a   Moreau, Pierre Arthur ^b   Vizzini, Alfredo ^c   Harrower, Emma ^a   De Haan, Andre ^d   Contu, Marco ^d   Curti, Mariano ^d  

^a UNIVERSITY OF TENNESSEE   (United States)

^b UNIV LILLE   (France)

^c UNIVERSITY OF TURIN   (Italy)

^d NONE   (Italy)

Author keywords

Agaricoid clade; carbonicolous fungi; Hymenogastraceae; Pachylepyrium; Strophariaceae; taxon sampling; taxonomy; types

Indexed keywords

AGARICALES; FUNGI; HYMENOGASTRACEAE; PACHYLEPYRIUM; STROPHARIACEAE;

EID: 84916209063     PISSN: 14772000     EISSN: 14780933     Source Type: Journal    
DOI: 10.1080/14772000.2014.967823     Document Type: Article

References (68)

1. Aime, M. C., Vilgalys, R., &, Miller, O. K. (2005). The Crepidotaceae (Basidiomycota, Agaricales). Phylogeny and taxonomy of the genera and revision of the family based on molecular evidence. American Journal of Botany, 92, 74-82.
2. Altekar, G., Dwarkadas, S., Huelsenbeck, J. P., &, Ronquist, F. (2004). Parallel Metropolis-coupled Markov chain Monte Carlo for Bayesian phylogenetic inference. Bioinformatics, 20, 407-415.
3. Ammirati, J. F., Parker, A. D., &, Matheny, P.B. (2007). Cleistocybe, a new genus of Agaricales. Mycoscience, 48, 282-289.
4. Baroni, T. J., &, Matheny, P. B. (2011). A re-evaluation of gasteroid and cyphelloid species of Entolomataceae from eastern North America. Harvard Papers in Botany, 16, 293-310.
5. Binder, M., Larsson, K.-H., Matheny, P. B., &, Hibbett, D. S. (2010). Amylocorticiales ord. nov. and Jaapiales ord. nov.: early-diverging clades of Agaricomycetidae dominated by corticioid forms. Mycologia, 102, 865-880.
6. Bon, M. (1992). Clé monographique des espèces galéro-naucorioïdes. Documents Mycologiques, 21, 1-89.
7. Claridge, A. W., Trappe, J. M., &, Hansen, K. (2009). Do fungi have a role as soil stabilizers and remediators after forest fire? Forest Ecology and Management, 257, 1063-1069.
8. de Haan, A. & Walleyn, R. (2009). Studies in Galerina. Galerinae Flandriae (3). Fungi non Delineati, 46, 1-84.
9. Dennis, R. W. G. (1961). Fungi venezuelani: IV. Agaricales. Kew Bulletin, 15, 67-156.
10. Fannechère, G. (2005). Statistiques et notation des dimensions des spores. Bulletin Trimestriel de la Société. Mycologique de France, 121, 255-292.
11. Fannechère, G. (2009). Mycomètre 2.02. Available online, 2.VII.2009. Retrieved from http://mycolim.free.fr/DOC-SML/mycm202/Charg-Mycm202.htm, accessed 9 October 2014.
12. Fries, E. M. (1836-1838 [ 1838[). Epicrisis systematicis mycologici, synopsis Hymenomycetum, I,. Uppsala.
13. Gardes, M., &, Bruns, T. D. (1993). ITS primers with enhanced specificity for basidiomycetes-applications to the identification of mycorrhizae and rusts. Molecular Ecology, 2, 113-118.
14. Garnica, S., Weiss, M., Walther, G., &, Oberwinkler, F. (2007). Reconstructing the evolution of agarics from nuclear gene sequences and basidiospore ultrastructure. Mycological Research, 111, 1019-1029.
15. Gouy, M., Guindon, S., &, Gascuel, O. (2010). SeaView version 4: a multiplatform graphical user interface for sequence alignment and phylogenetic tree building. Molecular Biology and Evolution, 27, 221-224.
16. Gulden, G. (2012). Galerina Earle. In H. Knudsen & J. Vesterholt. (Eds.), Funga Nordica. Agaricoid, Boletoid, Clavarioid, Cyphelloid and Gasteroid Genera, (pp. 886-903). Copenhagen: Norsvamp.
17. Gulden, G., Stensrud, Ø., Shalchian-Tabrizi, K., &, Kauserud, H. 2005. Galerina Earle: a polyphyletic genus in the consortium of dark-spored agarics. Mycologia, 97, 823-837.
18. Hausknecht, A., &, Zuccherelli, A. (1993). Ritrovamenti interessanti dal Ravennate. 1a parte. Alcune Agaricales a spore brune o più scure. Bollettino del Gruppo Micologico G Bresadola, 36, 35-61.
19. Holec, J. (2001). The genus Pholiota in central and western Europe. Libri Botanici, 20, 1-220.
20. Horak, E. (1968). Synopsis generum Agaricalium (Die Gattungstypen der Agaricales). Beiträge zur Kryptogamenflora der Schweiz, 13, 1-741.
21. Horak, E. (2005). Röhrlinge und Blätterpilze in Europa-unter der Mitarbeit von Anton Hausknecht (Bolbitiaceae) und P.A. Moreau (Alnicola),. Heidelberg: Elsevier Spektrum Akademischer.
22. Kirk, P., Cannon, P. F., Minter, D. W., &, Stalpers, J. A. (2008). The dictionary of fungi, (10th ed.). Wallingford: CAB International.
23. Kornerup, A., &, Wanscher, J.H. (1967). Methuen handbook of colour, (2nd ed.). London: Methuen & Co.
24. Kühner, R., &, Romagnesi, H. (1953). Flore anaytique des champignons supérieurs (Agarics, Bolets, Chanterelles),. Paris: Masson.
25. Lange, J.E. (1938). Studies in the Agarics of Denmark. Part XII. Hebeloma, Naucoria, Tubaria, Galera, Bolbitius, Pluteolus, Crepidotus, Pseudopaxillus, Paxillus. Dansk Botanisk Arkiv, 9, 1-104.
26. Lange, J.E. (1940). Flora Agaricina Danica V, supplement (I-IX). Copenhagen: The Danish Botanical Society.
27. Lundell, S., &, Nannfeldt, J. A. (1953). Fungi Exsiccati Suecici, 41-42, 2001-2100.
28. Maddison, D. R., &, Maddison, W. P. (2005). MacClade 4, version 4.08 for OS X. Sunderland, MA: Sinauer Associates.
29. Matheny, P.B. (2005). Improving phylogenetic inference of mushrooms with RPB1 and RPB2 nucleotide sequences (Inocybe; Agaricales). Molecular Phylogenetics and Evolution, 35, 1-20.
30. Matheny, P. B., &, Griffith, G. W. (2010). Mycoparasitism between Squamanita paradoxa and Cystoderma amianthinum (Cystodermateae, Agaricales). Mycoscience, 51, 456-461.
31. Matheny, P. B., Aime, M. C., Bougher, N. L., Buyck, B., Desjardin D. E.,., Horak, E. (2009). Out of the Palaeotropics? Historical biogeography and diversification of the cosmopolitan ectomycorrhizal mushroom family Inocybaceae. Journal of Biogeography, 36, 577-592.
32. Matheny, P. B., Austin, E. A., Birkebak, J. M., &, Wolfenbarger, A. D. (2010). Craterellus fallax, a Black Trumpet mushroom from eastern North America with a broad host range. Mycorrhiza, 20, 569-575.
33. Matheny, P. B., Curtis, J. M., Hofstetter, V., Aime, M. C., Moncalvo, J.-M.,., Ge, Z.-W. (2006). Major clades of Agaricales: a multilocus phylogenetic overview. Mycologia, 98, 982-995.
34. Matheny, P. B., Vellinga, E. C., Bougher, N., Ceska, O., Moreau, P.-A., Neves, M. A., &, Ammirati, J. (2007a). Taxonomy of displaced species of Tubaria. Mycologia, 99, 569-585.
35. Matheny, P. B., Wang, Z., Binder, M., Curtis, J. M., Lim, Y.-W.,., Nilsson, H. R. (2007b). Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi). Molecular Phylogenetics and Evolution, 43, 430-451.
36. McMullan-Fisher, S. J. M., May, T. W., Robinson, R. M., Bell, T. L., Lebel, T.,., Catcheside, P. (2011). Fungi and fire in Australian ecosystems: a review of current knowledge, management implications and future directions. Australian Journal of Botany, 59, 70-90.
37. Moncalvo, J. M., Vilgalys, R., Redhead, S. A., Johnson, J. E., James, T. Y.,., Aime, M. C. (2002). One hundred and seventeen clades of euagarics. Molecular Phylogenetics and Evolution, 23, 357-400.
38. Moreau, P.-A. (2009). Révision des Naucorioideae, Geophileae et Cortinarieae naucorioïdes. In J.-C. Maire, P.-A. Moreau & G. Robich. (Eds.), Compléments à la Flore des Champignons supérieurs du Maroc de G. Malençon & R. Bertault, (pp. 161-204). Nice: Confederatio Europaea Mycologia Mediterraneensis.
39. Moser, M. (1954). Une pholiotine nouvelle intéressante: Pholiotina funariophila n. sp. avec quelques remarques écologiques. Bulletin de la Société des Naturalistes dOyonnax, 8, 41-54.
40. Moser, M. (1978). Fungorum Rariorum Icones Coloratae VII. Vaduz: Springer Verlag.
41. Moser, M. (1983). Keys to Agarics and Boleti, 4th ed. London: Roger Phillips.
42. Moser, M. (2000). Beobachtungen zur Gattung Pachylepyrium Sing. Hoppea, 61, 267-274.
43. ODonnell, K. L., Cigelnik, E., &, Benny, G.L. (1998). Phylogenetic relationships among the Harpellales and Kickxellales. Mycologia, 90, 624-639.
44. Orton, P. D. (1960). New check list of British agarics and Boleti. Part III. Notes on genera and species in the list. Transactions of the British Mycological Society, 43, 159-439.
45. Petersen, G., Knudsen, H., &, Seberg, O. (2010). Alignment, clade robustness and fungal phylogenetics-Crepidotaceae and sister families revisited. Cladistics, 26, 62-71.
46. Rambaut, A. (2009). FigTree: tree figure drawing tool,. Version 1.2.3. Institute of Evolutionary Biology: University of Edinburgh, Edinburgh. Retrieved from http://tree.bio.ed.ac.uk/, accessed 9 October 2014.
47. Rees, B. J., Midgley, D. J., Marchant, A., Perkins, A., &, Orlovich, D. A. (2013). Morphological and molecular data for Australian Hebeloma species do not support the generic status of Anamika. Mycologia, 105, 1043-1058.
48. Romagnesi, H. (1937). Florule mycologique des bois de la Grange et de lÉtoile (Seine-et-Oise). Basidiomycètes. Revue de Mycologie, 2, 85-95.
49. Romagnesi, H. (1942). Description de quelques espèces dAgarics ochrosporés. Bulletin Trimestriel de la Société Mycologique de France, 58, 121-149.
50. Ronquist, F., &, Huelsenbeck, J. P. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19: 1572-1574.
51. Singer, R. (1957). New genera of fungi X. Pachylepyrium. Sydowia, 11, 320-322.
52. Singer, R. (1969). Mycoflora australis. Beihefte zur Nova Hedwigia, 29, 1-405.
53. Singer, R. (1986). The Agaricales in modern taxonomy, 4th ed. Koenigstein: Koeltz Scientific Books.
54. Singer, R., &, Moser, M. (1965). Forest mycology and forest communities in South America. 1. The early fall aspect of the mycoflora of the Cordillera Pelada (Chile). Mycopathologia et Mycologia Applicata, 26, 129-191.
55. Smith, A. H. (1951). The North American species of Naematoloma. Mycologia, 43, 467-521.
56. Smith, A. H. (1957). Additional new or unusual North American agarics. Beihefte zur Sydowia, 1, 46-61.
57. Smith, A. H., &, Hesler, L. R. (1968). The North American species of Pholiota. New York, NY: Hafner Publishing Company.
58. Smith, A. H., &, Singer, R. (1964). A monograph of the genus Galerina. New York, NY: Hafner Publishing Company.
59. Stamatakis, A. (2006). RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics, 22, 2688-2690.
60. Thiers, B. (continuously updated). Index herbariorum: a global directory of public herbaria and associated staff,. New York Botanical Garden's Virtual Herbarium. Retrieved from http://sweetgum.nybg.org/ih/, accessed 9 October 2014.
61. Veerkamp, M. (1998). Strong decline of carbonicolous fungi in the Netherlands. De Levende Natuur, 99, 62-66.
62. Vilgalys, R., &, Hester, M. (1990). Rapid genetic identification and mapping of enzymatically amplified ribosomal DNA from several Cryptococcus species. Journal of Bacteriology, 172, 4238-4246.
63. Walther, G., Garnica, S., &, Weiß, M. (2005). The systematic relevance of conidiogenesis modes in the gilled Agaricales. Mycological Research, 109, 525-544.
64. Watling, R., &, Gregory, N.M. (1993). British fungus flora. Agarics and Boleti 7. Cortinariaceae p.p,. Edinburgh: Royal Botanical Garden.
65. White, T. J., Bruns, T., Lee, S., &, Taylor, J. (1990). Amplification and directi sequencing of fungal ribosomal RNA genes for phylogenies. In M. A. Innis, D. H. Gelfand, J. J. Sninsky & T. J. White. (Eds.), PCR protocols: a guide to methods and applications, (pp. 315-322). San Diego, CA: Academic Press.
66. Wiens, J. J. (2006). Missing data and the design of phylogenetic analyses. Journal of Biomedical Informatics, 39, 34-42.
67. Wiens, J. J., &, Moen, D. S. (2008). Missing data and the accuracy of Bayesian phylogenetics. Journal of Systematics and Evolution, 46, 307-314.
68. Wiens, J. J., &, Tu, J. (2012). Highly incomplete taxa can rescue phylogenetic analyses from the negative impacts of limited taxon sampling. Public Library of Science ONE, 7, e42925.