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Volumn 13, Issue 12, 2014, Pages 5618-5634

Phosphoproteomics reveals the effect of ethylene in Soybean root under flooding stress

Author keywords

flooding stress; phosphoproteomics; root tip; soybean

Indexed keywords

ENZYME; ETHYLENE; INITIATION FACTOR 4G; MEMBRANE PROTEIN; PHOSPHOPROTEIN; PROGRAMMED CELL DEATH 4 PROTEIN; SUCROSE PHOSPHATE SYNTHASE 1F; UNCLASSIFIED DRUG; URIDINE DIPHOSPHATE GLUCOSE DEHYDROGENASE; ETHYLENE DERIVATIVE; MESSENGER RNA; PROTEOME; VEGETABLE PROTEIN;

EID: 84915758535     PISSN: 15353893     EISSN: 15353907     Source Type: Journal    
DOI: 10.1021/pr500621c     Document Type: Article
Times cited : (47)

References (43)
  • 1
    • 53249115259 scopus 로고    scopus 로고
    • Climate change and waterborne disease risk in the Great Lakes region of the U.S
    • Patz, A.; Vavrus, S. J.; Uejio, C. K.; McLellan, S. L. Climate change and waterborne disease risk in the Great Lakes region of the U.S Am. J. Prev. Med. 2008, 35, 451-458
    • (2008) Am. J. Prev. Med. , vol.35 , pp. 451-458
    • Patz, A.1    Vavrus, S.J.2    Uejio, C.K.3    McLellan, S.L.4
  • 2
    • 0041847077 scopus 로고    scopus 로고
    • Review of prospect for germplasm improvement for water-logging tolerance in wheat, barley and oats
    • Setter, T. L.; Waters, I. Review of prospect for germplasm improvement for water-logging tolerance in wheat, barley and oats Plant Soil 2003, 253, 1-34
    • (2003) Plant Soil , vol.253 , pp. 1-34
    • Setter, T.L.1    Waters, I.2
  • 3
    • 77956794182 scopus 로고
    • Aeration in higher plants
    • Armstrong, W. Aeration in higher plants Adv. Bot. Res. 1979, 7, 225-232
    • (1979) Adv. Bot. Res. , vol.7 , pp. 225-232
    • Armstrong, W.1
  • 4
    • 0037279704 scopus 로고    scopus 로고
    • Review: Mechanisms of anoxia tolerance in plants. I. Growth, survival and anaerobic catabolism
    • Gibbs, J.; Greenway, H. Review: Mechanisms of anoxia tolerance in plants. I. Growth, survival and anaerobic catabolism Funct. Plant Biol. 2003, 30, 353-353
    • (2003) Funct. Plant Biol. , vol.30 , pp. 353-353
    • Gibbs, J.1    Greenway, H.2
  • 6
    • 33751234197 scopus 로고    scopus 로고
    • QTL analysis of flooding tolerance in soybean at an early vegetative growth stage
    • Githiri, S. M.; Watanabe, S.; Harada, K.; Takahashi, R. QTL analysis of flooding tolerance in soybean at an early vegetative growth stage Plant Breed. 2006, 125, 613-618
    • (2006) Plant Breed. , vol.125 , pp. 613-618
    • Githiri, S.M.1    Watanabe, S.2    Harada, K.3    Takahashi, R.4
  • 7
    • 4644275500 scopus 로고    scopus 로고
    • The effect of flooding stress at the germination stage on the growth of soybean in relation to initial seed moisture content (Japanese)
    • Nakayama, N.; Hashimoto, S.; Shimada, S.; Takahashi, M.; Kim, Y.; Oya, T.; Arihara, J. The effect of flooding stress at the germination stage on the growth of soybean in relation to initial seed moisture content (Japanese) Jpn. J. Crop Sci. 2004, 74, 325-329
    • (2004) Jpn. J. Crop Sci. , vol.74 , pp. 325-329
    • Nakayama, N.1    Hashimoto, S.2    Shimada, S.3    Takahashi, M.4    Kim, Y.5    Oya, T.6    Arihara, J.7
  • 8
    • 65249095341 scopus 로고    scopus 로고
    • Proteome analysis of early-stage soybean seedlings under flooding stress
    • Hashiguchi, A.; Sakata, K.; Komatsu, S. Proteome analysis of early-stage soybean seedlings under flooding stress J. Proteome Res. 2009, 8, 2058-2069
    • (2009) J. Proteome Res. , vol.8 , pp. 2058-2069
    • Hashiguchi, A.1    Sakata, K.2    Komatsu, S.3
  • 9
    • 70349970273 scopus 로고    scopus 로고
    • A comprehensive analysis of the soybean genes and proteins expressed under flooding stress using transcriptome and proteome techniques
    • Komatsu, S.; Yamamoto, R.; Nanjo, Y.; Mikami, Y.; Yunokawa, H.; Sakata, K. A comprehensive analysis of the soybean genes and proteins expressed under flooding stress using transcriptome and proteome techniques J. Proteome Res. 2009, 8, 4766-4778
    • (2009) J. Proteome Res. , vol.8 , pp. 4766-4778
    • Komatsu, S.1    Yamamoto, R.2    Nanjo, Y.3    Mikami, Y.4    Yunokawa, H.5    Sakata, K.6
  • 10
    • 0035112494 scopus 로고    scopus 로고
    • Altered patterns of sucrose synthase phosphorylation and localization precede callose induction and root tip death in anoxic maize seedlings
    • Subbaiah, C. C.; Sachs, M. M. Altered patterns of sucrose synthase phosphorylation and localization precede callose induction and root tip death in anoxic maize seedlings Plant Physiol. 2001, 125, 585-594
    • (2001) Plant Physiol. , vol.125 , pp. 585-594
    • Subbaiah, C.C.1    Sachs, M.M.2
  • 12
    • 11944250236 scopus 로고
    • Hypoxic stress-induced changes in ribosomes of maize seedling roots
    • Bailey-Serres, J.; Freeling, M. Hypoxic stress-induced changes in ribosomes of maize seedling roots Plant Physiol. 1990, 94, 1237-1243
    • (1990) Plant Physiol. , vol.94 , pp. 1237-1243
    • Bailey-Serres, J.1    Freeling, M.2
  • 13
    • 77955459998 scopus 로고    scopus 로고
    • Comparative proteome analysis of early-stage sybean seedlings responses to flooding by using gel and gel-free techniques
    • Nanjo, Y.; Skultety, L.; Ashraf, Y.; Komatsu, S. Comparative proteome analysis of early-stage sybean seedlings responses to flooding by using gel and gel-free techniques J. Proteome Res. 2010, 9, 3989-4002
    • (2010) J. Proteome Res. , vol.9 , pp. 3989-4002
    • Nanjo, Y.1    Skultety, L.2    Ashraf, Y.3    Komatsu, S.4
  • 14
    • 84855560266 scopus 로고    scopus 로고
    • Mass spectrometry-based analysis of proteomic changes in the root tips of flooded soybean seedlings
    • Nanjo, Y.; Skultety, L.; Uváčková, L. U.; Klubicová, K.; Hajduch, M.; Komatsu, S. Mass spectrometry-based analysis of proteomic changes in the root tips of flooded soybean seedlings J. Proteome Res. 2011, 11, 372-385
    • (2011) J. Proteome Res. , vol.11 , pp. 372-385
    • Nanjo, Y.1    Skultety, L.2    Uváčková, L.U.3    Klubicová, K.4    Hajduch, M.5    Komatsu, S.6
  • 15
    • 0017184389 scopus 로고
    • A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding
    • Bradford, M. M. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding Anal. Biochem. 1976, 72, 248-254
    • (1976) Anal. Biochem. , vol.72 , pp. 248-254
    • Bradford, M.M.1
  • 18
    • 67049118923 scopus 로고    scopus 로고
    • Accurate and sensitive peptide identification with mascot percolator
    • Brosch, M.; Yu, L.; Hubbard, T.; Choudhary, J. Accurate and sensitive peptide identification with mascot percolator J. Proteome Res. 2009, 8, 3176-3181
    • (2009) J. Proteome Res. , vol.8 , pp. 3176-3181
    • Brosch, M.1    Yu, L.2    Hubbard, T.3    Choudhary, J.4
  • 20
    • 70549083891 scopus 로고    scopus 로고
    • Inference of gene regulatory networks using time-series data: A survey
    • Sima, C.; Hua, J. P.; Jung, S. W. Inference of gene regulatory networks using time-series data: a survey Curr. Genomics 2009, 10, 416-429
    • (2009) Curr. Genomics , vol.10 , pp. 416-429
    • Sima, C.1    Hua, J.P.2    Jung, S.W.3
  • 22
    • 21044441829 scopus 로고    scopus 로고
    • Expression and function of proteins during development of the basal region in rice seedlings
    • Tanaka, N.; Mitsui, S.; Nobori, H.; Yanagi, K.; Komatsu, S. Expression and function of proteins during development of the basal region in rice seedlings Mol. Cell. Proteomics 2005, 4, 796-808
    • (2005) Mol. Cell. Proteomics , vol.4 , pp. 796-808
    • Tanaka, N.1    Mitsui, S.2    Nobori, H.3    Yanagi, K.4    Komatsu, S.5
  • 24
    • 78049243938 scopus 로고    scopus 로고
    • Mutations of cellulose synthase (CESA1) phosphorylation sites modulate anisotropic cell expansion and bidirectional mobility of cellulose synthase
    • Chen, S.; Ehrhardt, D. W.; Somerville, C. R. Mutations of cellulose synthase (CESA1) phosphorylation sites modulate anisotropic cell expansion and bidirectional mobility of cellulose synthase Proc. Natl. Acad. Sci. U.S.A. 2010, 107, 17188-17193
    • (2010) Proc. Natl. Acad. Sci. U.S.A. , vol.107 , pp. 17188-17193
    • Chen, S.1    Ehrhardt, D.W.2    Somerville, C.R.3
  • 26
    • 84899883353 scopus 로고    scopus 로고
    • Analysis of initial changes in the proteins of soybean root tip under flooding stress using gel-free and gel-based proteomic techniques
    • Yin, X. J.; Sakata, K.; Nanjo, Y.; Komatsu, S. Analysis of initial changes in the proteins of soybean root tip under flooding stress using gel-free and gel-based proteomic techniques J. Proteomics 2014, 13 (106) 1-16
    • (2014) J. Proteomics , vol.13 , Issue.106 , pp. 1-16
    • Yin, X.J.1    Sakata, K.2    Nanjo, Y.3    Komatsu, S.4
  • 27
    • 0029310678 scopus 로고
    • Plant protein kinase families and signal transduction
    • Stone, J. M.; Walker, J. C. Plant protein kinase families and signal transduction Plant Physiol. 1995, 108, 451-457
    • (1995) Plant Physiol. , vol.108 , pp. 451-457
    • Stone, J.M.1    Walker, J.C.2
  • 28
    • 80052511115 scopus 로고    scopus 로고
    • Comprehensive analysis of mitochondria in roots and hypocotyls of soybean under flooding stress using proteomics and metabolomics techniques
    • Komatsu, S.; Yamamoto, A.; Nakamura, T.; Nouri, M. Z.; Nanjo, Y.; Nishizawa, K.; Furukawa, K. Comprehensive analysis of mitochondria in roots and hypocotyls of soybean under flooding stress using proteomics and metabolomics techniques J. Proteome Res. 2011, 10, 3993-4004
    • (2011) J. Proteome Res. , vol.10 , pp. 3993-4004
    • Komatsu, S.1    Yamamoto, A.2    Nakamura, T.3    Nouri, M.Z.4    Nanjo, Y.5    Nishizawa, K.6    Furukawa, K.7
  • 29
    • 1942469546 scopus 로고    scopus 로고
    • The effect of α-amanitin on the Arabidopsis seed proteome highlights the distinct roles of stored and neosynthesized mRNAs during germination
    • Rajjou, L.; Gallardo, K.; Debeaujon, I.; Vandekerckhove, J.; Job, C.; Job, D. The effect of α-amanitin on the Arabidopsis seed proteome highlights the distinct roles of stored and neosynthesized mRNAs during germination Plant Physiol. 2004, 134, 1598-1613
    • (2004) Plant Physiol. , vol.134 , pp. 1598-1613
    • Rajjou, L.1    Gallardo, K.2    Debeaujon, I.3    Vandekerckhove, J.4    Job, C.5    Job, D.6
  • 30
    • 84872961657 scopus 로고    scopus 로고
    • Proteomic analysis of the flooding tolerance mechanism in mutant soybean
    • Komatsu, S.; Nanjo, Y.; Nishimura, M. Proteomic analysis of the flooding tolerance mechanism in mutant soybean J. Proteomics 2013, 79, 231-250
    • (2013) J. Proteomics , vol.79 , pp. 231-250
    • Komatsu, S.1    Nanjo, Y.2    Nishimura, M.3
  • 32
    • 78449275495 scopus 로고    scopus 로고
    • Comparative proteomics analysis of differentially expressed proteins in soybean cell wall during flooding stress
    • Komatsu, S.; Kobayashi, Y.; Nishizawa, K.; Nanjo, Y.; Frukawa, K. Comparative proteomics analysis of differentially expressed proteins in soybean cell wall during flooding stress Amino Acids 2010, 39, 1435-1449
    • (2010) Amino Acids , vol.39 , pp. 1435-1449
    • Komatsu, S.1    Kobayashi, Y.2    Nishizawa, K.3    Nanjo, Y.4    Frukawa, K.5
  • 33
    • 0027133515 scopus 로고
    • Identification of the major regulatory phosphorylation site in sucrose phosphate synthase
    • McMichael, R. W., Jr.; Klein, R. R.; Salvucci, M. E.; Huber, S. C. Identification of the major regulatory phosphorylation site in sucrose phosphate synthase Arch. Biochem. Biophys. 1993, 307, 248-252
    • (1993) Arch. Biochem. Biophys. , vol.307 , pp. 248-252
    • McMichael, R.W.1    Klein, R.R.2    Salvucci, M.E.3    Huber, S.C.4
  • 34
    • 0001604865 scopus 로고
    • Effects of light and atmospheric carbon dioxide enrichment on photosynthesis and carbon partitioning in the leaves of tomato (Lycopersicon esculentum L.) plants over-expressing sucrose phosphate synthase
    • Galtier, N.; Foyer, C. H.; Murchie, E.; Alred, R.; Quick, P. Effects of light and atmospheric carbon dioxide enrichment on photosynthesis and carbon partitioning in the leaves of tomato (Lycopersicon esculentum L.) plants over-expressing sucrose phosphate synthase J. Exp. Bot. 1995, 46, 1335-1344
    • (1995) J. Exp. Bot. , vol.46 , pp. 1335-1344
    • Galtier, N.1    Foyer, C.H.2    Murchie, E.3    Alred, R.4    Quick, P.5
  • 35
    • 0020186856 scopus 로고
    • Heat-shock-induced alterations of ribosomal protein phosphorylation in plant cell cultures
    • Scharf, K. D.; Nover, L. Heat-shock-induced alterations of ribosomal protein phosphorylation in plant cell cultures Cell 1982, 30, 427-437
    • (1982) Cell , vol.30 , pp. 427-437
    • Scharf, K.D.1    Nover, L.2
  • 36
    • 0031200826 scopus 로고    scopus 로고
    • Acidic phosphoprotein complex of the 60S ribosomal subunit of maize seedling roots (components and changes in response to flooding)
    • Bailey-Serres, J.; Vangala, S.; Szick, K.; Lee, C. H. K. Acidic phosphoprotein complex of the 60S ribosomal subunit of maize seedling roots (components and changes in response to flooding) Plant Physiol. 1997, 114, 1293-1305
    • (1997) Plant Physiol. , vol.114 , pp. 1293-1305
    • Bailey-Serres, J.1    Vangala, S.2    Szick, K.3    Lee, C.H.K.4
  • 38
    • 0141625244 scopus 로고    scopus 로고
    • Transmembrane modulator-dependent bacterial tyrosine kinase activates UDP- glucose dehydrogenases
    • Mijakovic, I.; Poncet, S.; Boël, G.; Mazé, A.; Gillet, S.; Jamet, E.; Deutscher, J. Transmembrane modulator-dependent bacterial tyrosine kinase activates UDP- glucose dehydrogenases EMBO J. 2003, 22, 4709-4718
    • (2003) EMBO J. , vol.22 , pp. 4709-4718
    • Mijakovic, I.1    Poncet, S.2    Boël, G.3    Mazé, A.4    Gillet, S.5    Jamet, E.6    Deutscher, J.7
  • 39
    • 3142730654 scopus 로고    scopus 로고
    • Phosphorylation states of translational initiation factors affect mRNA cap binding in wheat
    • Khan, M. A.; Goss, D. J. Phosphorylation states of translational initiation factors affect mRNA cap binding in wheat Biochemistry 2004, 43, 9092-9097
    • (2004) Biochemistry , vol.43 , pp. 9092-9097
    • Khan, M.A.1    Goss, D.J.2
  • 40
    • 84883805700 scopus 로고    scopus 로고
    • The unique evolution of the programmed cell death 4 protein in plants
    • Cheng, S.; Liu, R.; Gallie, D. R. The unique evolution of the programmed cell death 4 protein in plants BMC Evolutionary Biol. 2013, 13, 199
    • (2013) BMC Evolutionary Biol. , vol.13 , pp. 199
    • Cheng, S.1    Liu, R.2    Gallie, D.R.3
  • 41
    • 0029911083 scopus 로고    scopus 로고
    • Ethylene biosynthesis and accumulation under drained and submerged conditions (a comparative study of two Rumex species)
    • Banga, M.; Slaa, E. J.; Blom, C. W. P. M.; Voesenek, L. A. C. J. Ethylene biosynthesis and accumulation under drained and submerged conditions (a comparative study of two Rumex species) Plant Physiol. 1996, 112, 229-237
    • (1996) Plant Physiol. , vol.112 , pp. 229-237
    • Banga, M.1    Slaa, E.J.2    Blom, C.W.P.M.3    Voesenek, L.A.C.J.4


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