A rapid extraction method for glycogen from formalin-fixed liver

Carbohydrate Polymers

Volumn 118, Issue , 2015, Pages 9-15

  Sullivan, Mitchell A ^a,b   Li, Shihan ^a,b   Aroney, Samuel T N ^b   Deng, Bin ^a   Li, Cheng ^a,b   Roura, Eugeni ^b   Schulz, Benjamin L ^b   Harcourt, Brooke E ^c   Forbes, Josephine M ^b,c   Gilbert, Robert G ^a,b  

^a HUAZHONG UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

^b UNIVERSITY OF QUEENSLAND   (Australia)

^c TRANSLATIONAL RESEARCH INSTITUTE   (Australia)

Author keywords

Formalin; Glycogen extraction; SEC

Indexed keywords

CENTRIFUGATION; FORMALDEHYDE; MASS SPECTROMETRY; MOLECULAR BIOLOGY; SIZE DISTRIBUTION; SIZE EXCLUSION CHROMATOGRAPHY; SUGAR (SUCROSE); TISSUE; TISSUE ENGINEERING;

EXTRACTION PROCEDURE; EXTRACTION TECHNIQUES; FROZEN TISSUES; HIGHLY BRANCHED POLYMERS; PROTEASE TREATMENT; RAPID EXTRACTION; STRUCTURAL STUDIES; SUCROSE GRADIENTS;

EXTRACTION;

FORMALDEHYDE; GLYCOGEN;

ANIMAL; CHEMISTRY; HUMAN; ISOLATION AND PURIFICATION; LIVER; PIG;

ANIMALS; FORMALDEHYDE; GLYCOGEN; HUMANS; LIVER; SWINE;

EID: 84913529228     PISSN: 01448617     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.carbpol.2014.11.005     Document Type: Article

References (36)

1. U.M. Bailey, M.F.B. Jamaluddin, and B.L. Schulz Analysis of congenital disorder of glycosylation-Id in a yeast model system shows diverse site-specific under-glycosylation of glycoproteins Journal of Proteome Research 11 11 2012 5376 5383
2. U.M. Bailey, C. Punyadeera, J.J. Cooper-White, and B.L. Schulz Analysis of the extreme diversity of salivary alpha-amylase isoforms generated by physiological proteolysis using liquid chromatography-tandem mass spectrometry Journal of Chromatography B: Analytical Technologies in the Biomedical and Life Sciences 911 2012 21 26
3. C. Bernard Sur le méchanisme physiologique de la formation du sucre dans le foie Comptes rendus 44 1857 578
4. Q.A. Besford, M.A. Sullivan, L. Zheng, R.G. Gilbert, D. Stapleton, and A. Gray-Weale The structure of cardiac glycogen in healthy mice International Journal of Biological Macromolecules 51 5 2012 887 891
5. A.M. Brown Brain glycogen re-awakened Journal of Neurochemistry 89 3 2004 537 552
6. E. Bueding, and S.A. Orrell A mild procedure for the isolation of polydisperse glycogen from animal tissues The Journal of Biological Chemistry 239 1964 4018 4020
7. P.C. Calder, and R. Geddes Glycogen of high molecular weight from mammalian muscle Carbohydrate Research 135 1985 249 256
8. R.A. Cave, S.A. Seabrook, M.J. Gidley, and R.G. Gilbert Characterization of starch by size-exclusion chromatography: The limitations imposed by shear scission Biomacromolecules 10 8 2009 2245 2253
9. M. Choi, C.Y. Chang, T. Clough, D. Broudy, T. Killeen, and B. MacLean MSstats: An R package for statistical analysis of quantitative mass spectrometry-based proteomic experiments? Bioinformatics 30 17 2014 2524 2526
10. M.A.O. De Apodaca, E. Fernandez, and G. Delafuente Tris discriminates between the different alpha-glucosidase activities from extracts of human neutrophils Journal of Inherited Metabolic Disease 15 2 1992 213 219
11. A.W. Devor, R.O. Barichie, and B. Siddiqui Continued studies on formalin method for liver glycogen Analytical Biochemistry 14 2 1966 237 242
12. A.W. Devor, and D.H. Canowitz Formaldehyde extraction of glycogen from liver Analytical Biochemistry 3 2 1962 166 169
13. I. Eltoum, J. Fredenburgh, R.B. Myers, and W.E. Grizzle Introduction to the theory and practice of fixation of tissues Journal of Histotechnology 24 3 2001 173 190
14. C.B. Fowler, D.L. Evers, T.J. O'Leary, and J.T. Mason Antigen retrieval causes protein unfolding: Evidence for a linear epitope model of recovered immunoreactivity Journal of Histochemistry & Cytochemistry 59 2011 366
15. R. Geddes, and K.B. Rapson Postmortem degradation of glycogen FEBS Letters 31 3 1973 324 326
16. M.J. Gidley, I. Hanashiro, N.M. Hani, S.E. Hill, A. Huber, and J.-L. Jane Reliable measurements of the size distributions of starch molecules in solution: Current dilemmas and recommendations Carbohydrate Polymers 79 2 2010 255 261
17. A.E. Hamielec, and A.C. Ouano Generalized universal molecular weight calibration parameter in GPC Journal of Liquid Chromatography 1 1 1978 111 120
18. K.G. Helander Kinetic-studies of formaldehyde binding in tissue Biotechnic & Histochemistry 69 3 1994 177 179
19. D.W. Huang, B.R. Sherman, and R.A. Lempicki Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources Nature Protocols 4 2009 44 57
20. X.G. Jiang, X.N. Jiang, S. Feng, R.J. Tian, M.L. Ye, and H.F. Zou Development of efficient protein extraction methods for shotgun proteome analysis of formalin-fixed tissues Journal of Proteome Research 6 2007 1038 1047
21. M.J. Jurczak, A.M. Danos, V.R. Rehrmann, M.B. Allison, C.C. Greenberg, and M.J. Brady Transgenic overexpression of protein targeting to glycogen markedly increases adipocytic glycogen storage in mice American Journal of Physiology - Endocrinology and Metabolism 292 3 2007 E952 E963
22. J.A. Kiernan Formaldehyde, formalin, paraformaldehyde and glutaraldehyde: What they are and what they do Microscopy Today 1 2000 8 12
23. T. Kuge, K. Kobayashi, H. Tanahashi, T. Igushi, and S. Kitamura Gel permeation chromatography of polysaccharides: Universal calibration curve Agricultural and Biological Chemistry 78 9 1984 2375 2376
24. A. Lazarow Particulate glycogen - A submicroscopic component of the guinea pig liver cell, its significance in glycogen storage and the regulation of blood sugar Anatomical Record 84 1 1942 31 50
25. S.A. Orrell, and E. Bueding A comparison of products obtained by various procedures used for the extraction of glycogen The Journal of Biological Chemistry 239 1964 4021 4026
26. G.J. Parker, A. Koay, R. Gilbert-Wilson, L.J. Waddington, and D. Stapleton AMP-activated protein kinase does not associate with glycogen alpha-particles from rat liver Biochemical and Biophysical Research Communications 362 2007 811 815
27. K.L. Roehrig, and J.B. Allred Direct enzymatic procedure for the determination of liver glycogen Analytical Biochemistry 58 1974 414 421
28. J.-H. Ryu, J. Drain, J.H. Kim, S. McGee, A. Gray-Weale, and L. Waddington Comparative structural analyses of purified glycogen particles from rat liver, human skeletal muscle and commercial preparations International Journal of Biological Macromolecules 45 5 2009 478 482
29. M.R. Stetten, H.M. Katzen, and D. Stetten Metabolic inhomogeneity of glycogen as a function of molecular weight Journal of Biological Chemistry 222 2 1956 587 599
30. M.A. Sullivan, S.T.N. Aroney, S. Li, F.J. Warren, L. Joo, and K.S. Mak Changes in glycogen structure over feeding cycle sheds new light on blood-glucose control Biomacromolecules 15 2 2014 660 665
31. M.A. Sullivan, J. Li, C. Li, F. Vilaplana, L. Zheng, and D. Stapleton Molecular structural differences between type-2-diabetic and healthy glycogen Biomacromolecules 12 6 2011 1983 1986
32. M.A. Sullivan, M.J. O'Connor, F. Umana, E. Roura, K. Jack, and D.I. Stapleton Molecular insights into glycogen alpha-particle formation Biomacromolecules 13 11 2012 3805 3813
33. M.A. Sullivan, P.O. Powell, T. Witt, F. Vilaplana, E. Roura, and R.G. Gilbert Improving size-exclusion chromatography separation for glycogen Journal of Chromatography A 1332 2014 21 29
34. M.A. Sullivan, F. Vilaplana, R.A. Cave, D.I. Stapleton, A.A. Gray-Weale, and R.G. Gilbert Nature of alpha and beta particles in glycogen using molecular size distributions Biomacromolecules 11 4 2010 1094 1100
35. M.A. Sullivan, F. Vilaplana, R.A. Cave, D.I. Stapleton, A.A. Gray-Weale, and R.G. Gilbert Using molecular size distributions to understand the nature of α and β particles in glycogen Biomacromolecules 11 4 2010 1094 1100
36. R. Thavarajah, V.K. Mudimbaimannar, J. Elizabeth, U.K. Rao, and K. Ranganathan Chemical and physical basics of routine formaldehyde fixation Journal of Oral and Maxillofacial Pathology 16 3 2012 400 405