Towards high peak capacity separations in normal pressure nanoflow liquid chromatography using meter long packed capillary columns

Analytica Chimica Acta

Volumn 852, Issue , 2014, Pages 267-273

  Han, Jing ^a   Ye, Linquan ^a   Xu, Lingjia ^a   Zhou, Zhuoheng ^a   Gao, Fan ^a   Xiao, Zhiliang ^a   Wang, Qiuquan ^a   Zhang, Bo ^a  

^a XIAMEN UNIVERSITY   (China)

Author keywords

Column technology; Liquid chromatography; Long capillary column; Packed column; Single particle frit; Single shot proteomics

Indexed keywords

COLUMN CHROMATOGRAPHY; MASS SPECTROMETRY; PROTEOMICS;

CAPILLARY COLUMNS; COLUMN TECHNOLOGY; PACKED COLUMN; SINGLE PARTICLE; SINGLE SHOTS;

LIQUID CHROMATOGRAPHY;

ANALYTICAL EQUIPMENT; ARTICLE; ELUTION; FLOW RATE; LIQUID CHROMATOGRAPHY; MEASUREMENT ACCURACY; METER LONG PACKED CAPILLARY COLUMN; NANOFABRICATION; PARTICULATE MATTER; PERMEABILITY; PRESSURE; PROTEOMICS; REPRODUCIBILITY; ANIMAL; BOVINE; DEVICES; EQUIPMENT DESIGN; ISOLATION AND PURIFICATION;

BOVINE SERUM ALBUMIN; PROTEIN;

ANIMALS; CATTLE; CHROMATOGRAPHY, LIQUID; EQUIPMENT DESIGN; PROTEINS; PROTEOMICS; SERUM ALBUMIN, BOVINE;

EID: 84912134159     PISSN: 00032670     EISSN: 18734324     Source Type: Journal    
DOI: 10.1016/j.aca.2014.09.006     Document Type: Article

References (42)

1. Thakur S.S., Geiger T., Chatterjee B., Bandilla P., Fröhlich F., Cox J., Mann M. Deep and highly sensitive proteome coverage by LC-MS/MS without prefractionation. Mol. Cell. Proteomics 2011, 10. M110.003699.
2. Nagaraj N., Kulak N.A., Cox J., Neuhauser N., Mayr K., Hoerning O., Vorm O., Mann M. System-wide perturbation analysis with nearly complete coverage of the yeast proteome by single-shot ultra HPLC runs on a bench top Orbitrap. Mol. Cell. Proteomics 2012, 11. M111.013722.
3. Iwasaki M., Miwa S., Ikegami T., Tomita M., Tanaka N., Ishihama Y. One-dimensional capillary liquid chromatographic separation coupled with tandem mass spectrometry unveils the Escherichia coli proteome on a microarray scale. Anal. Chem. 2010, 82:2616-2620.
4. Iwasaki M., Sugiyama N., Tanaka N., Ishihama Y. Human proteome analysis by using reversed phase monolithic silica capillary columns with enhanced sensitivity. J. Chromatogr. A 2012, 1228:292-297.
5. Yamana R., Iwasaki M., Wakabayashi M., Nakagawa M., Yamanaka S., Ishihama Y. Rapid and deep profiling of human induced pluripotent stem cell proteome by one-shot nanoLC-MS/MS analysis with meter-scale monolithic silica columns. J. Proteome Res. 2013, 12:214-221.
6. Kocher T., Swart R., Mechtler K. Ultra-high-pressure RPLC hyphenated to an LTQ-Orbitrap Velos reveals a linear relation between peak capacity and number of identified peptides. Anal. Chem. 2011, 83:2699-2704.
7. Zhou F., Lu Y., Ficarro S.B., Webber J.T., Marto J.A. Nanoflow low pressure high peak capacity single dimension LC-MS/MS platform for high-throughput, in-depth analysis of mammalian proteomes. Anal. Chem. 2012, 84:5133-5139.
8. Shi T., Fillmore T.L., Gao Y., Zhao R., He J., Schepmoes A.A., Nicora C.D., Wu C., Chambers J.L., Moore R.J., Kagan J., Srivastava S., Liu A.Y., Rodland K.D., Liu T., Camp D.G., Smith R.D., Qian W.J. Long-gradient separations coupled with selected reaction monitoring for highly sensitive, large scale targeted protein quantification in a single analysis. Anal. Chem. 2013, 85:9196-9203.
9. Shen Y., Zhao R., Belov M.E., Conrads T.P., Anderson G.A., Tang K., Pasa-Tolic L., Veenstra T.D., Lipton M.S., Udseth H.R., Smith R.D. Packed capillary reversed-phase liquid chromatography with high-performance electrospray ionization Fourier transform ion cyclotron resonance mass spectrometry for proteomics. Anal. Chem. 2001, 73:1766-1775.
10. Shen Y., Zhao R., Berger S.J., Anderson G.A., Rodriguez N., Smith R.D. High-efficiency nanoscale liquid chromatography coupled on-line with mass spectrometry using nanoelectrospray ionization for proteomics. Anal. Chem. 2002, 74:4235-4249.
11. Shen Y., Moore R.J., Zhao R., Blonder J., Auberry D.L., Masselon C., Pasa-Tolic L., Hixson K.K., Auberry K.J., Smith R.D. High-efficiency on-line solid-phase extraction coupling to 15-150-microm-i.d. column liquid chromatography for proteomic analysis. Anal. Chem. 2003, 75:3596-3605.
12. Shen Y., Zhang R., Moore R.J., Kim J., Metz T.O., Hixson K.K., Zhao R., Livesay E.A., Udseth H.R., Smith R.D. Automated 20kpsi RPLC-MS and MS/MS with chromatographic peak capacities of 1000-1500 and capabilities in proteomics and metabolomics. Anal. Chem. 2005, 77:3090-3100.
13. Luo Q., Shen Y., Hixson K.K., Zhao R., Yang F., Moore R.J., Mottaz H.M., Smith R.D. Preparation of 20-microm-i.d. silica-based monolithic columns and their performance for proteomics analyses. Anal. Chem. 2005, 77:5028-5035.
14. Cohen S.A., Schure M.R. Multidimensional Liquid Chromatography: Theory and Applications in Industrial Chemistry and the Life Sciences 2008, 93-125. Wiley, Hoboken, NJ.
15. Xie F., Smith R.D., Shen Y. Advanced proteomic liquid chromatography. J. Chromatogr. A 2012, 1261:78-90.
16. Tolstikov V.V., Lommen A., Nakanishi K., Tanaka N., Fiehn O. Monolithic silica-based capillary reversed-phase liquid chromatography/electrospray mass spectrometry for plant metabolomics. Anal. Chem. 2003, 75:6737-6740.
17. Miyamoto K., Hara T., Kobayashi H., Morisaka H., Tokuda D., Horie K., Koduki K., Makino S., Nunez O., Yang C., Kawabe T., Ikegami T., Takubo H., Ishihama Y., Tanaka N. High-efficiency liquid chromatographic separation utilizing long monolithic silica capillary columns. Anal. Chem. 2008, 80:8741-8750.
18. van de Meent M.H.M., de Jong G.J. Potential of long capillary monolithic columns for the analysis of protein digests. J. Sep. Sci. 2009, 32:487-493.
19. Eghbali H., Sandra K., Detobel F., Lynen F., Nakanishi K., Sandra P., Desmet G. Performance evaluation of long monolithic silica capillary columns in gradient liquid chromatography using peptide mixtures. J. Chromatogr. A 2011, 1218:3360-3366.
20. Horie K., Sato Y., Kimura T., Nakamura T., Ishihama Y., Oda Y., Ikegami T., Tanaka N. Estimation and optimization of the peak capacity of one-dimensional gradient high performance liquid chromatography using a long monolithic silica capillary column. J. Chromatogr. A 2012, 1228:283-291.
21. Washburn M.P., Wolters D., Yates J.R. Large-scale analysis of the yeast proteome by multidimensional protein identification technology. Nat. Biotechnol. 2001, 19:242-247.
22. Ishihama Y., Rappsilber J., Andersen J.S., Mann M. Microcolumns with self-assembled particle frits for proteomics. J. Chromatogr. A 2002, 979:233-239.
23. Maiolica A., Borsotti D., Rappsilber J. Self-made frits for nanoscale columns in proteomics. Proteomics 2005, 5:3847-3850.
24. Howells L.C., Whelan A.O., Woodward M.J., Coldham N.G. Simple and effective technical procedures for the packing and application of nanospray PicoFrit HPLC columns for proteomic analyses. Proteomics 2005, 5:3864-3867.
25. Guzzetta A.W., Chien A.S. A double-vented tetraphasic continuous column approach to MuDPIT analysis on long capillary columns demonstrates superior proteomic coverage. J. Proteome Res. 2005, 4:2412-2419.
26. Wang L.C., Okitsu C.Y., Kochounian H., Rodriguez A., Hsieh C.L., Zandi E. A simple and inexpensive on-column frit fabrication method for fused-silica capillaries for increased capacity and versatility in LC-MS/MS applications. Proteomics 2008, 8:1758-1761.
27. Tan F., Chen S., Zhang Y.J., Cai Y., Qian X.H. A simple and efficient frit preparation method for one-end tapered-fused silica-packed capillary columns in nanoLC-ESI-MS. Proteomics 2010, 10:1724-1727.
28. Masuda T., Sugiyama N., Tomita M., Ishihama Y. Microscale phosphoproteome analysis of 10,000 cells from human cancer cell lines. Anal. Chem. 2011, 83:7698-7703.
29. Di Palma S., Mohammed S., Heck A.J.R. ZIC-cHILIC as a fractionation method for sensitive and powerful shotgun proteomics. Nat. Protoc. 2012, 7:2041-2055.
30. Di Palma S., Hennrich M.L., Heck A.J.R., Mohammed S. Recent advances in peptide separation by multidimensional liquid chromatography for proteome analysis. J. Proteomics 2012, 75:3791-3813.
31. Xiao Z.L., Wang L., Liu Y., Wang Q.Q., Zhang B. A plug-and-use approach towards facile fabrication of capillary columns for high performance nanoflow liquid chromatography. J. Chromatogr. A 2014, 1325:109-114.
32. Nováková L., Vaast A., Stassen C., Broeckhoven K., Pra M.D., Swart R., Desmet G., Eeltink S. High-resolution peptide separations using nano-LC at ultra-high pressure. J. Sep. Sci. 2013, 36:1192-1199.
33. Jorgenson J.W. Capillary liquid chromatography at ultrahigh pressures. Annu. Rev. Anal. Chem. 2010, 3:129-150.
34. Stankovich J.J., Gritti F., Stevenson P.G., Guiochon G. The impact of column connection on band broadening in very high pressure liquid chromatography. J. Sep. Sci. 2013, 36:2709-2717.
35. Zhang B., Bergstrom E.T., Goodall D.M., Myers P. Single-particle fritting technology for capillary electrochromatography. Anal. Chem. 2007, 79:9229-9233.
36. Zhang B., Liu Q., Yang L.J., Wang Q.Q. Performance of single particle fritted capillary columns in electrochromatography. J. Chromatogr. A 2013, 1272:136-140.
37. Liu Q., Wang L., Zhou Z.H., Wang Q.Q., Yan L.J., Zhang B. Toward rapid preparation of capillary columns for electrochromatography use. Electrophoresis 2014, 35:836-839.
38. Gilar M., Daly A.E., Kele M., Neue U.D., Gebler J.C. Implications of column peak capacity on the separation of complex peptide mixtures in single- and two-dimensional high-performance liquid chromatography. J. Chromatogr. A 2004, 1061:183-192.
39. Liu H., Finch J.W., Lavallee M.J., Collamati R.A., Benevides C.C., Gebler J.C. Effects of column length, particle size, gradient length and flow rate on peak capacity of nano-scale liquid chromatography for peptide separations. J. Chromatogr. A 2007, 1147:30-36.
40. Fanali S., Rocchi S., Chankvetadze B. Use of novel phenyl-hexyl core-shell particles in nano-LC. Electrophoresis 2013, 34:1737-1742.
41. Shen Y., Page J.S., Smith R.D. Advanced capillary liquid chromatography-mass spectrometry for proteomics. Adv. Chromatogr. 2009, 47:31-58.
42. PicoTip Nanospray Emitters, New Objective, Woburn, MA, 2009.