메뉴 건너뛰기




Volumn 26, Issue 10, 2014, Pages 3939-3948

Nonsyntenic genes drive highly dynamic complementation of gene expression in Maize hybrids

Author keywords

[No Author keywords available]

Indexed keywords

ZEA MAYS;

EID: 84912122779     PISSN: 10404651     EISSN: 1532298X     Source Type: Journal    
DOI: 10.1105/tpc.114.130948     Document Type: Article
Times cited : (55)

References (49)
  • 1
    • 84858194655 scopus 로고    scopus 로고
    • Gene capture by Helitron transposons reshuffles the transcriptome of maize
    • Barbaglia, A.M., Klusman, K.M., Higgins, J., Shaw, J.R., Hannah, L.C., and Lal, S.K. (2012). Gene capture by Helitron transposons reshuffles the transcriptome of maize. Genetics 190: 965-975.
    • (2012) Genetics , vol.190 , pp. 965-975
    • Barbaglia, A.M.1    Klusman, K.M.2    Higgins, J.3    Shaw, J.R.4    Hannah, L.C.5    Lal, S.K.6
  • 4
    • 3142700743 scopus 로고    scopus 로고
    • Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes
    • Blanc, G., and Wolfe, K.H. (2004). Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes. Plant Cell 16: 1667-1678.
    • (2004) Plant Cell , vol.16 , pp. 1667-1678
    • Blanc, G.1    Wolfe, K.H.2
  • 7
    • 84863007735 scopus 로고    scopus 로고
    • Maize HapMap2 identifies extant variation from a genome in flux
    • Chia, J.M., et al. (2012). Maize HapMap2 identifies extant variation from a genome in flux. Nat. Genet. 44: 803-807.
    • (2012) Nat. Genet , vol.44 , pp. 803-807
    • Chia, J.M.1
  • 8
    • 36248951584 scopus 로고    scopus 로고
    • Transcriptomic and proteomic analyses of pericycle cells of the maize primary root
    • Dembinsky, D., et al. (2007). Transcriptomic and proteomic analyses of pericycle cells of the maize primary root. Plant Physiol. 145: 575-588.
    • (2007) Plant Physiol , vol.145 , pp. 575-588
    • Dembinsky, D.1
  • 9
    • 33845618112 scopus 로고    scopus 로고
    • The molecular genetics of crop domestication
    • Doebley, J.F., Gaut, B.S., and Smith, B.D. (2006). The molecular genetics of crop domestication. Cell 127: 1309-1321.
    • (2006) Cell , vol.127 , pp. 1309-1321
    • Doebley, J.F.1    Gaut, B.S.2    Smith, B.D.3
  • 10
    • 0034162885 scopus 로고    scopus 로고
    • Programmed cell death and aerenchyma formation in roots
    • Drew, M.C., He, C.J., and Morgan, P.W. (2000). Programmed cell death and aerenchyma formation in roots. Trends Plant Sci. 5: 123-127.
    • (2000) Trends Plant Sci , vol.5 , pp. 123-127
    • Drew, M.C.1    He, C.J.2    Morgan, P.W.3
  • 11
    • 33645020712 scopus 로고    scopus 로고
    • The contribution of breeding to yield advances in maize (Zea mays L.)
    • Duvick, D.N. (2005). The contribution of breeding to yield advances in maize (Zea mays L.). Adv. Agron. 86: 83-145.
    • (2005) Adv. Agron , vol.86 , pp. 83-145
    • Duvick, D.N.1
  • 13
    • 57149120510 scopus 로고    scopus 로고
    • Many or most genes in Arabidopsis transposed after the origin of the order Brassicales
    • Freeling, M., Lyons, E., Pedersen, B., Alam, M., Ming, R., and Lisch, D. (2008). Many or most genes in Arabidopsis transposed after the origin of the order Brassicales. Genome Res. 18: 1924-1937.
    • (2008) Genome Res , vol.18 , pp. 1924-1937
    • Freeling, M.1    Lyons, E.2    Pedersen, B.3    Alam, M.4    Ming, R.5    Lisch, D.6
  • 14
    • 7544221711 scopus 로고    scopus 로고
    • Xylogenesis: Initiation, progression, and cell death
    • Fukuda, H. (1996). Xylogenesis: Initiation, progression, and cell death. Annu. Rev. Plant Physiol. Plant Mol. Biol. 47: 299-325.
    • (1996) Annu. Rev. Plant Physiol. Plant Mol. Biol , vol.47 , pp. 299-325
    • Fukuda, H.1
  • 16
    • 84896808010 scopus 로고    scopus 로고
    • Insights into the maize pan-genome and pan-transcriptome
    • Hirsch, C.N., et al. (2014). Insights into the maize pan-genome and pan-transcriptome. Plant Cell 26: 121-135.
    • (2014) Plant Cell , vol.26 , pp. 121-135
    • Hirsch, C.N.1
  • 17
    • 73249116428 scopus 로고    scopus 로고
    • The maize root system: Morphology, anatomy, and genetics
    • J.L. Bennetzen and S.C. Hake, eds (New York: Springer)
    • Hochholdinger, F. (2009). The maize root system: morphology, anatomy, and genetics. In Handbook of Maize: Its Biology, J.L. Bennetzen and S.C. Hake, eds (New York: Springer), pp. 145-160.
    • (2009) Handbook of Maize: Its Biology , pp. 145-160
    • Hochholdinger, F.1
  • 18
    • 84930188735 scopus 로고    scopus 로고
    • Manifestation of heterosis during early maize (Zea mays L.) root development
    • Hoecker, N., Keller, B., Piepho, H.P., and Hochholdinger, F. (2006). Manifestation of heterosis during early maize (Zea mays L.) root development. Theor. Appl. Genet. 112: 421-429.
    • (2006) Theor. Appl. Genet , vol.112 , pp. 421-429
    • Hoecker, N.1    Keller, B.2    Piepho, H.P.3    Hochholdinger, F.4
  • 19
    • 84862993359 scopus 로고    scopus 로고
    • Comparative population genomics of maize domestication and improvement
    • Hufford, M.B., et al. (2012). Comparative population genomics of maize domestication and improvement. Nat. Genet. 44: 808-811.
    • (2012) Nat. Genet , vol.44 , pp. 808-811
    • Hufford, M.B.1
  • 20
    • 0029188653 scopus 로고
    • Specialized zones of development in roots
    • Ishikawa, H., and Evans, M.L. (1995). Specialized zones of development in roots. Plant Physiol. 109: 725-727.
    • (1995) Plant Physiol , vol.109 , pp. 725-727
    • Ishikawa, H.1    Evans, M.L.2
  • 21
    • 84862981255 scopus 로고    scopus 로고
    • Genome-wide genetic changes during modern breeding of maize
    • Jiao, Y., et al. (2012). Genome-wide genetic changes during modern breeding of maize. Nat. Genet. 44: 812-815.
    • (2012) Nat. Genet , vol.44 , pp. 812-815
    • Jiao, Y.1
  • 22
    • 4544245758 scopus 로고    scopus 로고
    • Chromosome painting using repetitive DNA sequences as probes for somatic chromosome identification in maize
    • Kato, A., Lamb, J.C., and Birchler, J.A. (2004). Chromosome painting using repetitive DNA sequences as probes for somatic chromosome identification in maize. Proc. Natl. Acad. Sci. USA 101: 13554-13559.
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 13554-13559
    • Kato, A.1    Lamb, J.C.2    Birchler, J.A.3
  • 23
    • 84861434537 scopus 로고    scopus 로고
    • Dynamics and adaptive benefits of protein domain emergence and arrangements during plant genome evolution
    • Kersting, A.R., Bornberg-Bauer, E., Moore, A.D., and Grath, S. (2012). Dynamics and adaptive benefits of protein domain emergence and arrangements during plant genome evolution. Genome Biol. Evol. 4: 316-329.
    • (2012) Genome Biol. Evol , vol.4 , pp. 316-329
    • Kersting, A.R.1    Bornberg-Bauer, E.2    Moore, A.D.3    Grath, S.4
  • 24
    • 78049338441 scopus 로고    scopus 로고
    • Genome-wide patterns of genetic variation among elite maize inbred lines
    • Lai, J., et al. (2010). Genome-wide patterns of genetic variation among elite maize inbred lines. Nat. Genet. 42: 1027-1030.
    • (2010) Nat. Genet , vol.42 , pp. 1027-1030
    • Lai, J.1
  • 25
    • 84966162827 scopus 로고
    • Nuclear-DNA content in the genera Zea and Sorghum -intergeneric, interspecific and intraspecific variation
    • Laurie, D.A., and Bennett, M.D. (1985). Nuclear-DNA content in the genera Zea and Sorghum -intergeneric, interspecific and intraspecific variation. Heredity 55: 307-313.
    • (1985) Heredity , vol.55 , pp. 307-313
    • Laurie, D.A.1    Bennett, M.D.2
  • 26
    • 84885140594 scopus 로고    scopus 로고
    • Improving transcriptome assembly through error correction of high-throughput sequence reads
    • Macmanes, M.D., and Eisen, M.B. (2013). Improving transcriptome assembly through error correction of high-throughput sequence reads. PeerJ 1: e113.
    • (2013) PeerJ , vol.1
    • Macmanes, M.D.1    Eisen, M.B.2
  • 27
    • 84894062713 scopus 로고    scopus 로고
    • Structural variation and genome complexity: Is dispensable really dispensable? Curr
    • Marroni, F., Pinosio, S., and Morgante, M. (2014). Structural variation and genome complexity: is dispensable really dispensable? Curr. Opin. Plant Biol. 18: 31-36.
    • (2014) Opin. Plant Biol , vol.18 , pp. 31-36
    • Marroni, F.1    Pinosio, S.2    Morgante, M.3
  • 29
    • 84877677216 scopus 로고    scopus 로고
    • A bountiful harvest: Genomic insights into crop domestication phenotypes
    • Olsen, K.M., and Wendel, J.F. (2013). A bountiful harvest: genomic insights into crop domestication phenotypes. Annu. Rev. Plant Biol. 64: 47-70.
    • (2013) Annu. Rev. Plant Biol , vol.64 , pp. 47-70
    • Olsen, K.M.1    Wendel, J.F.2
  • 31
    • 58449137410 scopus 로고    scopus 로고
    • The Sorghum bicolor genome and the diversification of grasses
    • Paterson, A.H., et al. (2009). The Sorghum bicolor genome and the diversification of grasses. Nature 457: 551-556.
    • (2009) Nature , vol.457 , pp. 551-556
    • Paterson, A.H.1
  • 32
    • 67650521193 scopus 로고    scopus 로고
    • JAGS: A program for analysis of Bayesian graphical models using Gibbs sampling
    • K. Hornik, F. Leisch, and A. Zeileis, eds (Vienna, Austria: Technical University Vienna)
    • Plummer, M. (2003). JAGS: A program for analysis of Bayesian graphical models using Gibbs sampling. In 3rd International Workshop on Distributed Statistical Computing, K. Hornik, F. Leisch, and A. Zeileis, eds (Vienna, Austria: Technical University Vienna).
    • (2003) 3rd International Workshop on Distributed Statistical Computing
    • Plummer, M.1
  • 33
    • 41149087694 scopus 로고    scopus 로고
    • Convergence diagnosis and output analysis for MCMC
    • Plummer, M., Best, N., Cowles, K., Vines, K. (2006). Convergence diagnosis and output analysis for MCMC. R News 6: 7-11.
    • (2006) R News , vol.6 , pp. 7-11
    • Plummer, M.1    Best, N.2    Cowles, K.3    Vines, K.4
  • 34
    • 66749187689 scopus 로고    scopus 로고
    • Tissue specific control of themaize (Zea mays L.) embryo, cortical parenchyma, and stele proteomes by RUM1 which regulates seminal and lateral root initiation
    • Saleem, M., Lamkemeyer, T., Schützenmeister, A., Fladerer, C., Piepho, H.P., Nordheim, A., and Hochholdinger, F. (2009). Tissue specific control of themaize (Zea mays L.) embryo, cortical parenchyma, and stele proteomes by RUM1 which regulates seminal and lateral root initiation. J. Proteome Res. 8: 2285-2297.
    • (2009) J. Proteome Res , vol.8 , pp. 2285-2297
    • Saleem, M.1    Lamkemeyer, T.2    Schützenmeister, A.3    Fladerer, C.4    Piepho, H.P.5    Nordheim, A.6    Hochholdinger, F.7
  • 35
    • 79952495788 scopus 로고    scopus 로고
    • Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize
    • Schnable, J.C., and Freeling, M. (2011). Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize. PLoS ONE 6: e17855.
    • (2011) PLoS ONE , vol.6
    • Schnable, J.C.1    Freeling, M.2
  • 36
    • 79952744855 scopus 로고    scopus 로고
    • Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss
    • Schnable, J.C., Springer, N.M., and Freeling, M. (2011). Differentiation of the maize subgenomes by genome dominance and both ancient and ongoing gene loss. Proc. Natl. Acad. Sci. USA 108: 4069-4074.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , pp. 4069-4074
    • Schnable, J.C.1    Springer, N.M.2    Freeling, M.3
  • 37
    • 84877658412 scopus 로고    scopus 로고
    • Progress toward understanding heterosis in crop plants
    • Schnable, P.S., and Springer, N.M. (2013). Progress toward understanding heterosis in crop plants. Annu. Rev. Plant Biol. 64: 71-88.
    • (2013) Annu. Rev. Plant Biol , vol.64 , pp. 71-88
    • Schnable, P.S.1    Springer, N.M.2
  • 38
    • 70450202132 scopus 로고    scopus 로고
    • The B73 maize genome: Complexity, diversity, and dynamics
    • Schnable, P.S., et al. (2009). The B73 maize genome: complexity, diversity, and dynamics. Science 326: 1112-1115.
    • (2009) Science , vol.326 , pp. 1112-1115
    • Schnable, P.S.1
  • 41
    • 73649121258 scopus 로고    scopus 로고
    • Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content
    • Springer, N.M., et al. (2009). Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. PLoS Genet. 5: e1000734.
    • (2009) PLoS Genet , vol.5
    • Springer, N.M.1
  • 42
    • 33747866029 scopus 로고    scopus 로고
    • Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression patterns in the F1 hybrid
    • Stupar, R.M., and Springer, N.M. (2006). Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression patterns in the F1 hybrid. Genetics 173: 2199-2210.
    • (2006) Genetics , vol.173 , pp. 2199-2210
    • Stupar, R.M.1    Springer, N.M.2
  • 43
    • 84920129897 scopus 로고    scopus 로고
    • R2jags: A package for running JAGS from R
    • Su, Y., and Yajima, M. (2011). R2jags: A package for running JAGS from R. In R Package Version 0.02-17, http://cran.r-project.org/web/packages/ R2jags/.
    • (2011) R Package Version 0.02-17
    • Su, Y.1    Yajima, M.2
  • 44
    • 78549273825 scopus 로고    scopus 로고
    • Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor
    • Swanson-Wagner, R.A., Eichten, S.R., Kumari, S., Tiffin, P., Stein, J.C., Ware, D., and Springer, N.M. (2010). Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor. Genome Res. 20: 1689-1699.
    • (2010) Genome Res , vol.20 , pp. 1689-1699
    • Swanson-Wagner, R.A.1    Eichten, S.R.2    Kumari, S.3    Tiffin, P.4    Stein, J.C.5    Ware, D.6    Springer, N.M.7
  • 46
    • 0035039408 scopus 로고    scopus 로고
    • Molecular interactions between the specialist herbivore Manduca sexta (Lepidoptera, Sphingidae) and its natural host Nicotiana attenuata. IV. Insect-Induced ethylene reduces jasmonate-induced nicotine accumulation by regulating putrescine N-methyltransferase transcripts
    • Winz, R.A., and Baldwin, I.T. (2001). Molecular interactions between the specialist herbivore Manduca sexta (Lepidoptera, Sphingidae) and its natural host Nicotiana attenuata. IV. Insect-Induced ethylene reduces jasmonate-induced nicotine accumulation by regulating putrescine N-methyltransferase transcripts. Plant Physiol. 125: 2189-2202.
    • (2001) Plant Physiol , vol.125 , pp. 2189-2202
    • Winz, R.A.1    Baldwin, I.T.2
  • 47
    • 3042722019 scopus 로고    scopus 로고
    • Evolutionary changes in cis and trans gene regulation
    • Wittkopp, P.J., Haerum, B.K., and Clark, A.G. (2004). Evolutionary changes in cis and trans gene regulation. Nature 430: 85-88.
    • (2004) Nature , vol.430 , pp. 85-88
    • Wittkopp, P.J.1    Haerum, B.K.2    Clark, A.G.3
  • 48
    • 77954741256 scopus 로고    scopus 로고
    • Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs
    • Woodhouse, M.R., Schnable, J.C., Pedersen, B.S., Lyons, E., Lisch, D., Subramaniam, S., and Freeling, M. (2010). Following tetraploidy in maize, a short deletion mechanism removed genes preferentially from one of the two homologs. PLoS Biol. 8: e1000409.
    • (2010) PLoS Biol , vol.8
    • Woodhouse, M.R.1    Schnable, J.C.2    Pedersen, B.S.3    Lyons, E.4    Lisch, D.5    Subramaniam, S.6    Freeling, M.7
  • 49
    • 66049146171 scopus 로고    scopus 로고
    • A genomewide transcription analysis reveals a close correlation of promoter INDEL polymorphism and heterotic gene expression in rice hybrids
    • Zhang, H.Y., He, H., Chen, L.B., Li, L., Liang, M.Z., Wang, X.F., Liu, X.G., He, G.M., Chen, R.S., Ma, L.G., and Deng, X.W. (2008). A genomewide transcription analysis reveals a close correlation of promoter INDEL polymorphism and heterotic gene expression in rice hybrids. Mol. Plant 1: 720-731.
    • (2008) Mol. Plant , vol.1 , pp. 720-731
    • Zhang, H.Y.1    He, H.2    Chen, L.B.3    Li, L.4    Liang, M.Z.5    Wang, X.F.6    Liu, X.G.7    He, G.M.8    Chen, R.S.9    Ma, L.G.10    Deng, X.W.11


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.