-
1
-
-
77950949952
-
The gene balance hypothesis: Implications for gene regulation, quantitative traits and evolution
-
Birchler JA, Veitia RA. 2010. The gene balance hypothesis: Implications for gene regulation, quantitative traits and evolution. New Phytol 186:54-62.
-
(2010)
New Phytol
, vol.186
, pp. 54-62
-
-
Birchler, J.A.1
Veitia, R.A.2
-
2
-
-
77956795823
-
Heterosis
-
Birchler JA, Yao H, Chudalayandi S, Vaiman D, Veitia RA. 2010. Heterosis. Plant Cell 22: 2105-2112.
-
(2010)
Plant Cell
, vol.22
, pp. 2105-2112
-
-
Birchler, J.A.1
Yao, H.2
Chudalayandi, S.3
Vaiman, D.4
Veitia, R.A.5
-
3
-
-
77949481052
-
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
-
doi: 10.1186/1471-2105-11-94
-
Bullard JH, Purdom E, Hansen KD, Dudoit S. 2010. Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments. BMC Bioinformatics 11: 94. doi: 10.1186/1471-2105-11-94.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 94
-
-
Bullard, J.H.1
Purdom, E.2
Hansen, K.D.3
Dudoit, S.4
-
4
-
-
85101895806
-
Heterosis: Feeding people and protecting natural resources
-
(ed. JG Coors, S Pandey), American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Madison, WI
-
Duvick DN. 1999. Heterosis: Feeding people and protecting natural resources. In The genetics and exploitation of heterosis in crops (ed. JG Coors, S Pandey), pp. 19-29. American Society of Agronomy, Crop Science Society of America, and Soil Science Society of America, Madison, WI.
-
(1999)
The Genetics and Exploitation of Heterosis in Crops
, pp. 19-29
-
-
Duvick, D.N.1
-
5
-
-
33645020712
-
The Contribution of Breeding to Yield Advances in maize (Zea mays L.)
-
DOI 10.1016/S0065-2113(05)86002-X, PII S006521130586002X
-
Duvick DN. 2005. The contribution of breeding to yield advances in maize (Zea mays L.). Adv Agron 86: 83-145. (Pubitemid 43588441)
-
(2005)
Advances in Agronomy
, vol.86
, pp. 83-145
-
-
Duvick, D.N.1
-
7
-
-
74949084336
-
Genome-wide mapping of alternative splicing in Arabidopsis thaliana
-
Filichkin SA, Priest HD, Givan SA, Shen RK, Bryant DW, Fox SE, Wong WK, Mockler TC. 2010. Genome-wide mapping of alternative splicing in Arabidopsis thaliana. Genome Res 20: 45-58.
-
(2010)
Genome Res
, vol.20
, pp. 45-58
-
-
Filichkin, S.A.1
Priest, H.D.2
Givan, S.A.3
Shen, R.K.4
Bryant, D.W.5
Fox, S.E.6
Wong, W.K.7
Mockler, T.C.8
-
8
-
-
75849163891
-
Transcriptome-based distance measures for grouping of germplasm and prediction of hybrid performance in maize
-
Frisch M, Thiemann A, Fu JJ, Schrag TA, Scholten S, Melchinger AE. 2010. Transcriptome-based distance measures for grouping of germplasm and prediction of hybrid performance in maize. Theor Appl Genet 120: 441-450.
-
(2010)
Theor Appl Genet
, vol.120
, pp. 441-450
-
-
Frisch, M.1
Thiemann, A.2
Fu, J.J.3
Schrag, T.A.4
Scholten, S.5
Melchinger, A.E.6
-
9
-
-
0001178202
-
A language and program for complex Bayesian modeling
-
Gilks WR, Thomas A, Spiegelhalter DJ. 1994. A language and program for complex Bayesian modeling. Statistician 43: 169-177.
-
(1994)
Statistician
, vol.43
, pp. 169-177
-
-
Gilks, W.R.1
Thomas, A.2
Spiegelhalter, D.J.3
-
10
-
-
79551529430
-
A unifying theory for general multigenic heterosis: Energy efficiency, protein metabolism, and implications for molecular breeding
-
Goff SA. 2010. A unifying theory for general multigenic heterosis: Energy efficiency, protein metabolism, and implications for molecular breeding. New Phytol 189: 923-937.
-
(2010)
New Phytol
, vol.189
, pp. 923-937
-
-
Goff, S.A.1
-
11
-
-
79952301195
-
Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor
-
Groszmann M, Greavesa IK, Albertyn ZI, Scofield GN, Peacock WJ, Dennis ES. 2011. Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor. Proc Natl Acad Sci 108: 2617-2622.
-
(2011)
Proc Natl Acad Sci
, vol.108
, pp. 2617-2622
-
-
Groszmann, M.1
Greavesa, I.K.2
Albertyn, Z.I.3
Scofield, G.N.4
Peacock, W.J.5
Dennis, E.S.6
-
12
-
-
0141872967
-
Genome-wide mRNA profiling reveals heterochronic allelic variation and a new imprinted gene in hybrid maize endosperm
-
DOI 10.1046/j.1365-313X.2003.01852.x
-
Guo M, Rupe MA, Danilevskaya ON, Yang XF, Hut ZH. 2003. Genome-wide mRNA profiling reveals heterochronic allelic variation and a new imprinted gene in hybrid maize endosperm. Plant J 36: 30-44. (Pubitemid 37231655)
-
(2003)
Plant Journal
, vol.36
, Issue.1
, pp. 30-44
-
-
Guo, M.1
Rupe, M.A.2
Danilevskaya, O.N.3
Yang, X.4
Hu, Z.5
-
13
-
-
3142750575
-
Allelic variation of gene expression in maize hybrids
-
Guo M, Rupe MA, Zinselmeier C, Habben J, Bowen BA, Smith OS. 2004. Allelic variation of gene expression in maize hybrids. Plant Cell 16: 1707-1716.
-
(2004)
Plant Cell
, vol.16
, pp. 1707-1716
-
-
Guo, M.1
Rupe, M.A.2
Zinselmeier, C.3
Habben, J.4
Bowen, B.A.5
Smith, O.S.6
-
14
-
-
33747735632
-
Genome-wide transcript analysis of maize hybrids: Allelic additive gene expression and yield heterosis
-
Guo M, Rupe MA, Yang XF, Crasta O, Zinselmeier C, Smith OS, Bowen B. Genome-wide transcript analysis of maize hybrids: Allelic additive gene expression and yield heterosis. Theor Appl Genet 113: 831-845.
-
Theor Appl Genet
, vol.113
, pp. 831-845
-
-
Guo, M.1
Rupe, M.A.2
Yang, X.F.3
Crasta, O.4
Zinselmeier, C.5
Smith, O.S.6
Bowen, B.7
-
15
-
-
42149163447
-
Genome-wide allele-specific expression analysis using Massively Parallel Signature Sequencing (MPSS) reveals cis- and trans-effects on gene expression in maize hybrid meristem tissue
-
Guo M, Yang S, Rupe M, Hu B, Bickel DR, Arthur L, Smith O. 2008. Genome-wide allele-specific expression analysis using Massively Parallel Signature Sequencing (MPSS) reveals cis- and trans-effects on gene expression in maize hybrid meristem tissue. Plant Mol Biol 66: 551-563.
-
(2008)
Plant Mol Biol
, vol.66
, pp. 551-563
-
-
Guo, M.1
Yang, S.2
Rupe, M.3
Hu, B.4
Bickel, D.R.5
Arthur, L.6
Smith, O.7
-
16
-
-
77953220837
-
Cell Number Regulator1 affects plant and organ size in maize: Implications for crop yield enhancement and heterosis
-
Guo M, Rupe MA, Dieter JA, Zou JJ, Spielbauer D, Duncan KE, Howard RJ, Hou ZL, Simmons CR. 2010. Cell Number Regulator1 affects plant and organ size in maize: Implications for crop yield enhancement and heterosis. Plant Cell 22: 1057-1073.
-
(2010)
Plant Cell
, vol.22
, pp. 1057-1073
-
-
Guo, M.1
Rupe, M.A.2
Dieter, J.A.3
Zou, J.J.4
Spielbauer, D.5
Duncan, K.E.6
Howard, R.J.7
Hou, Z.L.8
Simmons, C.R.9
-
17
-
-
77950346035
-
Global epigenetic and transcriptional trends among two rice subspecies and their resiprocal hybrids
-
He GM, Zhu XP, Eiling AA, Chen LB, Wang XF, Guo L, Liang MZ, He H, Zhang HY, Chen FF, et al. 2010. Global epigenetic and transcriptional trends among two rice subspecies and their resiprocal hybrids. Plant Cell 22: 17-33.
-
(2010)
Plant Cell
, vol.22
, pp. 17-33
-
-
He, G.M.1
Zhu, X.P.2
Eiling, A.A.3
Chen, L.B.4
Wang, X.F.5
Guo, L.6
Liang, M.Z.7
He, H.8
Zhang, H.Y.9
Chen, F.F.10
-
18
-
-
34548395815
-
Towards the molecular basis of heterosis
-
DOI 10.1016/j.tplants.2007.08.005, PII S1360138507001847
-
Hochholdinger F, Hoecker N. 2007. Towards the molecular basis of heterosis. Trends Plant Sci 12: 427-432. (Pubitemid 47362796)
-
(2007)
Trends in Plant Science
, vol.12
, Issue.9
, pp. 427-432
-
-
Hochholdinger, F.1
Hoecker, N.2
-
19
-
-
84930188735
-
Manifestation of heterosis during early maize (Zea mays L.) root development
-
DOI 10.1007/s00122-005-0139-4
-
Hoecker N, Keller B, Piepho HP, Hochholdinger F. 2006. Manifestation of heterosis during early maize (Zea mays L.) root development. Theor Appl Genet 112: 421-429. (Pubitemid 43081585)
-
(2006)
Theoretical and Applied Genetics
, vol.112
, Issue.3
, pp. 421-429
-
-
Hoecker, N.1
Keller, B.2
Piepho, H.-P.3
Hochholdinger, F.4
-
20
-
-
52049125924
-
Comparison of maize (Zea mays L.) F1-hybrid and parental inbred line primary root transcriptomes suggests organ-specific patterns of nonadditive gene expression and conserved expression trends
-
Hoecker N, Keller B, Muthreich N, Chollet D, Descombes P, Piepho HP, Hochholdinger F. 2008a. Comparison of maize (Zea mays L.) F1-hybrid and parental inbred line primary root transcriptomes suggests organ-specific patterns of nonadditive gene expression and conserved expression trends. Genetics 179: 1275-1283.
-
(2008)
Genetics
, vol.179
, pp. 1275-1283
-
-
Hoecker, N.1
Keller, B.2
Muthreich, N.3
Chollet, D.4
Descombes, P.5
Piepho, H.P.6
Hochholdinger, F.7
-
21
-
-
53549101031
-
1-hybrid compared to its parental inbred lines
-
1-hybrid compared to its parental inbred lines. Proteomics 8: 3882-3894.
-
(2008)
Proteomics
, vol.8
, pp. 3882-3894
-
-
Hoecker, N.1
Lamkemeyer, T.2
Sarholz, B.3
Paschold, A.4
Fladerer, C.5
Madlung, J.6
Wurster, K.7
Stahl, M.8
Piepho, H.P.9
Nordheim, A.10
-
22
-
-
70249146903
-
Advantages of next-generation sequencing versus the microarray in epigenetic research
-
Hurd PJ, Nelson CJ. 2009. Advantages of next-generation sequencing versus the microarray in epigenetic research. Brief Funct Genomics Proteomics 8: 174-183.
-
(2009)
Brief Funct Genomics Proteomics
, vol.8
, pp. 174-183
-
-
Hurd, P.J.1
Nelson, C.J.2
-
23
-
-
75849155012
-
Heterosis in early seed development: A comparative study of F1 embryo and endosperm tissues 6 days after fertilization
-
Jahnke S, Sarholz B, Thiemann A, Kuhr V, Gutierrez-Marcos JF, Geiger HH, Piepho HP, Scholten S. 2010. Heterosis in early seed development: A comparative study of F1 embryo and endosperm tissues 6 days after fertilization. Theor Appl Genet 120: 389-400.
-
(2010)
Theor Appl Genet
, vol.120
, pp. 389-400
-
-
Jahnke, S.1
Sarholz, B.2
Thiemann, A.3
Kuhr, V.4
Gutierrez-Marcos, J.F.5
Geiger, H.H.6
Piepho, H.P.7
Scholten, S.8
-
24
-
-
0001136614
-
Dominance of linked factors as a means of accounting for heterosis
-
Jones DF. 1917. Dominance of linked factors as a means of accounting for heterosis. Genetics 2: 466-479.
-
(1917)
Genetics
, vol.2
, pp. 466-479
-
-
Jones, D.F.1
-
25
-
-
77951769145
-
The flowering gene SINGLE FLOWER TRUSS drives heterosis for yield in tomato
-
Krieger U, Lippman ZB, Zamir D. 2010. The flowering gene SINGLE FLOWER TRUSS drives heterosis for yield in tomato. Nat Genet 42: 459-465.
-
(2010)
Nat Genet
, vol.42
, pp. 459-465
-
-
Krieger, U.1
Lippman, Z.B.2
Zamir, D.3
-
26
-
-
21144454436
-
Gene movement by Helitron transposons contributes to the haplotype variability of maize
-
DOI 10.1073/pnas.0502923102
-
Lai JS, Li YB, Messing J, Dooner HK. 2005. Gene movement by Helitron transposons contributes to the haplotype variability of maize. Proc Natl Acad Sci 102: 9068-9073. (Pubitemid 40881079)
-
(2005)
Proceedings of the National Academy of Sciences of the United States of America
, vol.102
, Issue.25
, pp. 9068-9073
-
-
Lai, J.1
Li, Y.2
Messing, J.3
Dooner, H.K.4
-
27
-
-
78049338441
-
Genome-wide patterns of genetic variation among elite maize inbred lines
-
Lai JS, Li RQ, Xu X, Jin WW, Xu ML, Zhao HN, Xiang ZK, Song WB, Ying K, Zhang M, et al. 2010. Genome-wide patterns of genetic variation among elite maize inbred lines. Nat Genet 42: 1027-1030.
-
(2010)
Nat Genet
, vol.42
, pp. 1027-1030
-
-
Lai, J.S.1
Li, R.Q.2
Xu, X.3
Jin, W.W.4
Xu, M.L.5
Zhao, H.N.6
Xiang, Z.K.7
Song, W.B.8
Ying, K.9
Zhang, M.10
-
28
-
-
77955350347
-
Using deep RNA sequencing for the structural annotation of the Laccaria bicolor mycorrhizal transcriptome
-
doi: 10.1371/journal.pone.0009780
-
Larsen PE, Trivedi G, Sreedasyam A, Lu V, Podila GK, Collart FR. 2010. Using deep RNA sequencing for the structural annotation of the Laccaria bicolor mycorrhizal transcriptome. PLoS ONE 5: e9780. doi: 10.1371/journal.pone.0009780.
-
(2010)
PLoS ONE
, vol.5
-
-
Larsen, P.E.1
Trivedi, G.2
Sreedasyam, A.3
Lu, V.4
Podila, G.K.5
Collart, F.R.6
-
29
-
-
69949166093
-
Comparative gene expression profiles between heterotic and non-heterotic hybrids of tetraploid Medicago sativa
-
doi: 10.1186/1471-2229-9-107
-
Li XH, Wei YL, Nettleton D, Brummer EC. 2009. Comparative gene expression profiles between heterotic and non-heterotic hybrids of tetraploid Medicago sativa. BMC Plant Biol 9: 107. doi: 10.1186/1471-2229-9-107.
-
(2009)
BMC Plant Biol
, vol.9
, pp. 107
-
-
Li, X.H.1
Wei, Y.L.2
Nettleton, D.3
Brummer, E.C.4
-
30
-
-
33846543858
-
Heterosis: revisiting the magic
-
DOI 10.1016/j.tig.2006.12.006, PII S0168952506004094
-
Lippman ZB, Zamir D. 2007. Heterosis: Revisiting the magic. Trends Genet 23: 60-66. (Pubitemid 46161217)
-
(2007)
Trends in Genetics
, vol.23
, Issue.2
, pp. 60-66
-
-
Lippman, Z.B.1
Zamir, D.2
-
31
-
-
55849151275
-
Systems approaches to identifying gene regulatory networks in plants
-
Long TA, Rady SM, Benfey PN. 2008. Systems approaches to identifying gene regulatory networks in plants. Annu Rev Cell Dev Biol 24: 81-103.
-
(2008)
Annu Rev Cell Dev Biol
, vol.24
, pp. 81-103
-
-
Long, T.A.1
Rady, S.M.2
Benfey, P.N.3
-
32
-
-
78649816418
-
Non-additive protein accumulation patterns in maize (Zea mays L.) hybrids during embryo development
-
Marcon C, Schützenmeister A, Schütz W, Madlung J, Piepho H-P, Hochholdinger F. 2010. Non-additive protein accumulation patterns in maize (Zea mays L.) hybrids during embryo development. J Proteome Res 9: 6511-6522.
-
(2010)
J Proteome Res
, vol.9
, pp. 6511-6522
-
-
Marcon, C.1
Schützenmeister, A.2
Schütz, W.3
Madlung, J.4
Piepho, H.-P.5
Hochholdinger, F.6
-
33
-
-
50649089207
-
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
-
Marioni JC, Mason CE, Mane SM, Stephens M, Gilad Y. 2008. RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays. Genome Res 18: 1509-1517.
-
(2008)
Genome Res
, vol.18
, pp. 1509-1517
-
-
Marioni, J.C.1
Mason, C.E.2
Mane, S.M.3
Stephens, M.4
Gilad, Y.5
-
34
-
-
72849144434
-
Sequencing technologies-the next generation
-
Metzker ML. 2010. Sequencing technologies-the next generation. Nat Rev Genet 11: 31-46.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 31-46
-
-
Metzker, M.L.1
-
35
-
-
33846839271
-
Heterosis associated gene expression in maize embryos 6 days after fertilization exhibits additive, dominant and overdominant pattern
-
DOI 10.1007/s11103-006-9095-x
-
Meyer S, Pospisil H, Scholten S. 2007. Heterosis associated gene expression in maize embryos 6 days after fertilization exhibits additive, dominant and overdominant pattern. Plant Mol Biol 63: 381-391. (Pubitemid 46204481)
-
(2007)
Plant Molecular Biology
, vol.63
, Issue.3
, pp. 381-391
-
-
Meyer, S.1
Pospisil, H.2
Scholten, S.3
-
36
-
-
33749260517
-
A discussion of statistical methods for design and analysis of microarray experiments for plant scientists
-
DOI 10.1105/tpc.106.041616
-
Nettleton D. 2006. A discussion of statistical methods for design and analysis of microarray experiments for plant scientists. Plant Cell 18: 2112-2121. (Pubitemid 44484713)
-
(2006)
Plant Cell
, vol.18
, Issue.9
, pp. 2112-2121
-
-
Nettleton, D.1
-
37
-
-
33748651016
-
Estimating the number of true null hypotheses from a histogram of p values
-
DOI 10.1198/108571106X129135
-
Nettleton D, Hwang JTG, Caldo RA, Wise RP. 2006. Estimating the number of true null hypotheses from a histogram of p values. J Agric Biol Environ Stat 11: 337-356. (Pubitemid 44383308)
-
(2006)
Journal of Agricultural, Biological, and Environmental Statistics
, vol.11
, Issue.3
, pp. 337-356
-
-
Nettleton, D.1
Hwang, J.T.G.2
Caldo, R.A.3
Wise, R.P.4
-
38
-
-
75849125815
-
Molecular dissection of heterosis manifestation during early maize root development
-
Paschold A, Marcon C, Hoecker N, Hochholdinger F. 2010. Molecular dissection of heterosis manifestation during early maize root development. Theor Appl Genet 120: 383-388.
-
(2010)
Theor Appl Genet
, vol.120
, pp. 383-388
-
-
Paschold, A.1
Marcon, C.2
Hoecker, N.3
Hochholdinger, F.4
-
41
-
-
75849147404
-
Gene expression analysis at the intersection of ploidy and hybridity in maize
-
Riddle NC, Jiang HM, An LL, Doerge RW, Birchler JA. 2010. Gene expression analysis at the intersection of ploidy and hybridity in maize. Theor Appl Genet 120: 341-353.
-
(2010)
Theor Appl Genet
, vol.120
, pp. 341-353
-
-
Riddle, N.C.1
Jiang, H.M.2
An, L.L.3
Doerge, R.W.4
Birchler, J.A.5
-
42
-
-
75849143874
-
Heterotic patterns of sugar and amino acid components in developing maize kernels
-
Römisch-Margl L, Spielbauer G, Schützenmeister A, Schwab W, Piepho HP, Genschel U, Gierl A. 2010. Heterotic patterns of sugar and amino acid components in developing maize kernels. Theor Appl Genet 120: 369-381.
-
(2010)
Theor Appl Genet
, vol.120
, pp. 369-381
-
-
Römisch-Margl, L.1
Spielbauer, G.2
Schützenmeister, A.3
Schwab, W.4
Piepho, H.P.5
Genschel, U.6
Gierl, A.7
-
43
-
-
70450202132
-
The B73 maize genome: Complexity, diversity, and dynamics
-
Schnable PS, Ware D, Fulton RS, Stein JC, Wei FS, Pasternak S, Liang CZ, Zhang JW, Fulton L, Graves TA, et al. 2009. The B73 maize genome: Complexity, diversity, and dynamics. Science 326: 1112-1115.
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
Stein, J.C.4
Wei, F.S.5
Pasternak, S.6
Liang, C.Z.7
Zhang, J.W.8
Fulton, L.9
Graves, T.A.10
-
44
-
-
33645241407
-
The RIN: An RNA integrity number for assigning integrity values to RNA measurements
-
doi: 10.1186/1471-2199-7-3
-
Schroeder A, Mueller O, Stocker S, Salowsky R, Leiber M, Gassmann M, Lightfoot S, Menzel W, Granzow M, Ragg T. 2006. The RIN: An RNA integrity number for assigning integrity values to RNA measurements. BMC Mol Biol 7: 3. doi: 10.1186/1471-2199-7-3.
-
(2006)
BMC Mol Biol
, vol.7
, pp. 3
-
-
Schroeder, A.1
Mueller, O.2
Stocker, S.3
Salowsky, R.4
Leiber, M.5
Gassmann, M.6
Lightfoot, S.7
Menzel, W.8
Granzow, M.9
Ragg, T.10
-
45
-
-
35348906821
-
Allele-specific expression patterns reveal biases and embryo-specific parent-of-origin effects in hybrid maize
-
DOI 10.1105/tpc.107.052258
-
Springer NM, Stupar RM. 2007. Allele-specific expression patterns reveal biases and embryo-specific parent-of-origin effects in hybrid maize. Plant Cell 19: 2391-2402. (Pubitemid 47583832)
-
(2007)
Plant Cell
, vol.19
, Issue.8
, pp. 2391-2402
-
-
Springer, N.M.1
Stupar, R.M.2
-
46
-
-
73649121258
-
Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content
-
doi: 10.1371/journal.pgen.1000734
-
Springer NM, Ying K, Fu Y, Ji TM, Yeh CT, Jia Y, Wu W, Richmond T, Kitzman J, Rosenbaum H, et al. 2009. Maize inbreds exhibit high levels of copy number variation (CNV) and presence/absence variation (PAV) in genome content. PLoS Genet 5: e1000734. doi: 10.1371/journal.pgen.1000734.
-
(2009)
PLoS Genet
, vol.5
-
-
Springer, N.M.1
Ying, K.2
Fu, Y.3
Ji, T.M.4
Yeh, C.T.5
Jia, Y.6
Wu, W.7
Richmond, T.8
Kitzman, J.9
Rosenbaum, H.10
-
48
-
-
33747866029
-
1 hybrid
-
DOI 10.1534/genetics.106.060699
-
Stupar RM, Springer NM. 2006. Cis-transcriptional variation inmaize inbred lines B73 and Mo17 leads to additive expression patterns in the F1hybrid. Genetics 173: 2199-2210. (Pubitemid 44285696)
-
(2006)
Genetics
, vol.173
, Issue.4
, pp. 2199-2210
-
-
Stupar, R.M.1
Springer, N.M.2
-
49
-
-
35348865466
-
Nonadditive expression and parent-of-origin effects identified by microarray and allele-specific expression profiling of maize endosperm
-
DOI 10.1104/pp.107.101428
-
Stupar RM, Hermanson PJ, Springer NM. 2007. Nonadditive expression and parent-of-origin effects identified by microarray and allele-specific expression profiling of maize endosperm. Plant Physiol 145: 411-425. (Pubitemid 47575140)
-
(2007)
Plant Physiology
, vol.145
, Issue.2
, pp. 411-425
-
-
Stupar, R.M.1
Hermanson, P.J.2
Springer, N.M.3
-
50
-
-
43149100157
-
Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis
-
doi: 10.1186/1471-2229-8-33
-
Stupar RM, Gardiner JM, Oldre AG, Haun WJ, Chandler VL, Springer NM. Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis. BMC Plant Biol 8: 33. doi: 10.1186/1471-2229-8-33.
-
BMC Plant Biol
, vol.8
, pp. 33
-
-
Stupar, R.M.1
Gardiner, J.M.2
Oldre, A.G.3
Haun, W.J.4
Chandler, V.L.5
Springer, N.M.6
-
53
-
-
70450180852
-
Paternal dominance of trans-eQTL influences gene expression patterns in maize hybrids
-
Swanson-Wagner RA, DeCook R, Jia Y, Bancroft T, Ji TM, Zhao XF, Nettleton D, Schnable PS. 2009. Paternal dominance of trans-eQTL influences gene expression patterns in maize hybrids. Science 326: 1118-1120.
-
(2009)
Science
, vol.326
, pp. 1118-1120
-
-
Swanson-Wagner, R.A.1
DeCook, R.2
Jia, Y.3
Bancroft, T.4
Ji, T.M.5
Zhao, X.F.6
Nettleton, D.7
Schnable, P.S.8
-
54
-
-
78549273825
-
Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor
-
Swanson-Wagner RA, Eichten SR, Kumari S, Tiffin P, Stein JC, Ware D, Springer NM. 2010. Pervasive gene content variation and copy number variation in maize and its undomesticated progenitor. Genome Res 20: 1689-1699.
-
(2010)
Genome Res
, vol.20
, pp. 1689-1699
-
-
Swanson-Wagner, R.A.1
Eichten, S.R.2
Kumari, S.3
Tiffin, P.4
Stein, J.C.5
Ware, D.6
Springer, N.M.7
-
55
-
-
84950758368
-
The calculation of posterior distributions by data augmentation
-
Tanner MA, Wing HW. 1987. The calculation of posterior distributions by data augmentation. J Am Stat Assoc 82: 528-540.
-
(1987)
J Am Stat Assoc
, vol.82
, pp. 528-540
-
-
Tanner, M.A.1
Wing, H.W.2
-
56
-
-
75849126030
-
Correlation between parental transcriptome and field data for the characterization of heterosis in Zea mays L
-
Thiemann A, Fu JJ, Schrag TA, Melchinger AE, Frisch M, Scholten S. 2010. Correlation between parental transcriptome and field data for the characterization of heterosis in Zea mays L. Theor Appl Genet 120: 401-413.
-
(2010)
Theor Appl Genet
, vol.120
, pp. 401-413
-
-
Thiemann, A.1
Fu, J.J.2
Schrag, T.A.3
Melchinger, A.E.4
Frisch, M.5
Scholten, S.6
-
57
-
-
33845614089
-
Comparative expression profiling in meristems of inbred-hybrid triplets of maize based on morphological investigations of heterosis for plant height
-
DOI 10.1007/s11103-006-9069-z
-
Uzarowska A, Keller B, Piepho HP, Schwarz G, Ingvardsen C, Wenzel G, Lubberstedt T. 2007. Comparative expression profiling in meristems of inbred-hybrid triplets of maize based on morphological investigations of heterosis for plant height. Plant Mol Biol 63: 21-34. (Pubitemid 44950229)
-
(2007)
Plant Molecular Biology
, vol.63
, Issue.1
, pp. 21-34
-
-
Uzarowska, A.1
Keller, B.2
Piepho, H.-P.3
Schwarz, G.4
Ingvardsen, C.5
Wenzel, G.6
Lubberstedt, T.7
-
58
-
-
32544437127
-
Genetic analysis of variation in gene expression in Arabidopsis thaliana
-
DOI 10.1534/genetics.105.041509
-
Vuylsteke M, van Eeuwijk F, Van Hummelen P, Kuiper M, Zabeau M. 2005. Genetic analysis of variation in gene expression in Arabidopsis thaliana. Genetics 171: 1267-1275. (Pubitemid 43234858)
-
(2005)
Genetics
, vol.171
, Issue.3
, pp. 1267-1275
-
-
Vuylsteke, M.1
Van Eeuwijk, F.2
Van Hummelen, P.3
Kuiper, M.4
Zabeau, M.5
-
59
-
-
33750054658
-
Heterosis in root development and differential gene expression between hybrids and their parental inbreds in wheat (Triticum aestivum L.)
-
Wang ZK, Ni ZF, Wu HL, Nie XL, Sun QX. 2006. Heterosis in root development and differential gene expression between hybrids and their parental inbreds in wheat (Triticum aestivum L.). Theor Appl Genet 113: 1283-1294.
-
(2006)
Theor Appl Genet
, vol.113
, pp. 1283-1294
-
-
Wang, Z.K.1
Ni, Z.F.2
Wu, H.L.3
Nie, X.L.4
Sun, Q.X.5
-
60
-
-
66149176899
-
Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize
-
Wang XF, Elling AA, Li XY, Li N, Peng ZY, He GM, Sun H, Qi YJ, Liu XS, Deng XW. 2009. Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize. Plant Cell 21: 1053-1069.
-
(2009)
Plant Cell
, vol.21
, pp. 1053-1069
-
-
Wang, X.F.1
Elling, A.A.2
Li, X.Y.3
Li, N.4
Peng, Z.Y.5
He, G.M.6
Sun, H.7
Qi, Y.J.8
Liu, X.S.9
Deng, X.W.10
-
61
-
-
57749195712
-
RNA-Seq: A revolutionary tool for transcriptomics
-
Wang Z, Gerstein M, Snyder M. 2009. RNA-Seq: A revolutionary tool for transcriptomics. Nat Rev Genet 10: 57-63.
-
(2009)
Nat Rev Genet
, vol.10
, pp. 57-63
-
-
Wang, Z.1
Gerstein, M.2
Snyder, M.3
-
62
-
-
77951998724
-
Exploring plant transcriptomes using ultra high-throughput sequencing
-
Wang L, Li PH, Brutnell TP. 2010. Exploring plant transcriptomes using ultra high-throughput sequencing. Briefings in Functional Genomics 9: 118-128.
-
(2010)
Briefings in Functional Genomics
, vol.9
, pp. 118-128
-
-
Wang, L.1
Li, P.H.2
Brutnell, T.P.3
-
63
-
-
66049086034
-
A transcriptomic analysis of superhybrid rice LYP9 and its parents
-
Wei G, Tao Y, Liu GZ, Chen C, Luo RY, Xia HA, Gan Q, Zeng HP, Lu ZK, Han YN, et al. 2009. A transcriptomic analysis of superhybrid rice LYP9 and its parents. Proc Natl Acad Sci 106: 7695-7701.
-
(2009)
Proc Natl Acad Sci
, vol.106
, pp. 7695-7701
-
-
Wei, G.1
Tao, Y.2
Liu, G.Z.3
Chen, C.4
Luo, R.Y.5
Xia, H.A.6
Gan, Q.7
Zeng, H.P.8
Lu, Z.K.9
Han, Y.N.10
-
64
-
-
0035039408
-
Molecular interactions between the specialist herbivore Manduca sexta (lepidoptera, sphingidae) and its natural host Nicotiana attenuata. IV. Insect-induced ethylene reduces Jasmonate-induced nicotine accumulation by regulating putrescine N-methyltransferase transcripts
-
DOI 10.1104/pp.125.4.2189
-
Winz RA, Baldwin IT. 2001. Molecular interactions between the specialist herbivore Manduca sexta (Lepidoptera, Sphingidae) and its natural host Nicotiana attenuata. IV. Insect-induced ethylene reduces jasmonate-induced nicotine accumulation by regulating putrescine N-methyltransferase transcripts. Plant Physiol 125: 2189-2202. (Pubitemid 32375799)
-
(2001)
Plant Physiology
, vol.125
, Issue.4
, pp. 2189-2202
-
-
Winz, R.A.1
Baldwin, I.T.2
-
65
-
-
77950545365
-
Characterization of transcriptional complexity during berry development in Vitis vinifera using RNA-Seq
-
Zenoni S, Ferrarini A, Giacomelli E, Xumerle L, Fasoli M, Malerba G, Bellin D, Pezzotti M, Delledonne M. 2010. Characterization of transcriptional complexity during berry development in Vitis vinifera using RNA-Seq. Plant Physiol 152: 1787-1795.
-
(2010)
Plant Physiol
, vol.152
, pp. 1787-1795
-
-
Zenoni, S.1
Ferrarini, A.2
Giacomelli, E.3
Xumerle, L.4
Fasoli, M.5
Malerba, G.6
Bellin, D.7
Pezzotti, M.8
Delledonne, M.9
-
66
-
-
70350142925
-
Global analysis of allele-specific expression in Arabidopsis thaliana
-
Zhang X, Borevitz JO. 2009. Global analysis of allele-specific expression in Arabidopsis thaliana. Genetics 182: 943-954.
-
(2009)
Genetics
, vol.182
, pp. 943-954
-
-
Zhang, X.1
Borevitz, J.O.2
-
67
-
-
77951871117
-
Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome
-
Zhang GJ, Guo GW, Hu XD, Zhang Y, Li QY, Li RQ, Zhuang RH, Lu ZK, He ZQ, Fang XD, et al. 2010. Deep RNA sequencing at single base-pair resolution reveals high complexity of the rice transcriptome. Genome Res 20: 646-654.
-
(2010)
Genome Res
, vol.20
, pp. 646-654
-
-
Zhang, G.J.1
Guo, G.W.2
Hu, X.D.3
Zhang, Y.4
Li, Q.Y.5
Li, R.Q.6
Zhuang, R.H.7
Lu, Z.K.8
He, Z.Q.9
Fang, X.D.10
-
68
-
-
37249069878
-
1 hybrids
-
DOI 10.1534/genetics.107.080325
-
Zhuang Y, Adams KL. 2007. Extensive allelic variation in gene expression in Populus F-1 hybrids. Genetics 177: 1987-1996. (Pubitemid 350276982)
-
(2007)
Genetics
, vol.177
, Issue.4
, pp. 1987-1996
-
-
Zhuang, Y.1
Adams, K.L.2
|