-
1
-
-
84871036375
-
Global and regional mortality from 235 causes of death for 20 age groups in 1990 and 2010: a systematic analysis for the Global Burden of Disease Study 2010
-
Lozano R, Naghavi M, Foreman K, Lim S, Shibuya K, Aboyans V, Abraham J, Adair T, Aggarwal R, Ahn SY, Alvarado M, Anderson HR, Anderson LM, Andrews KG, Atkinson C, Baddour LM, Barker-Collo S, Bartels DH, Bell ML, Benjamin EJ, Bennett D, Bhalla K, Bikbov B, Bin Abdulhak A, Birbeck G, Blyth F, Bolliger I, Boufous S, Bucello C, Burch M, et al: Global and regional mortality from 235 causes of death for 20 age groups in 1990 and 2010: a systematic analysis for the Global Burden of Disease Study 2010. Lancet 2012, 380:2095-2128.
-
(2012)
Lancet
, vol.380
, pp. 2095-2128
-
-
Lozano, R.1
Naghavi, M.2
Foreman, K.3
Lim, S.4
Shibuya, K.5
Aboyans, V.6
Abraham, J.7
Adair, T.8
Aggarwal, R.9
Ahn, S.Y.10
Alvarado, M.11
Anderson, H.R.12
Anderson, L.M.13
Andrews, K.G.14
Atkinson, C.15
Baddour, L.M.16
Barker-Collo, S.17
Bartels, D.H.18
Bell, M.L.19
Benjamin, E.J.20
Bennett, D.21
Bhalla, K.22
Bikbov, B.23
Bin Abdulhak, A.24
Birbeck, G.25
Blyth, F.26
Bolliger, I.27
Boufous, S.28
Bucello, C.29
Burch, M.30
more..
-
2
-
-
77953002425
-
Global, regional, and national causes of child mortality in 2008: a systematic analysis
-
Black RE, Cousens S, Johnson HL, Lawn JE, Rudan I, Bassani DG, Jha P, Campbell H, Walker CF, Cibulskis R, Eisele T, Liu L, Mathers C, Child Health Epidemiology Reference Group of WHO and UNICEF: Global, regional, and national causes of child mortality in 2008: a systematic analysis. Lancet 2010, 375:1969-1987.
-
(2010)
Lancet
, vol.375
, pp. 1969-1987
-
-
Black, R.E.1
Cousens, S.2
Johnson, H.L.3
Lawn, J.E.4
Rudan, I.5
Bassani, D.G.6
Jha, P.7
Campbell, H.8
Walker, C.F.9
Cibulskis, R.10
Eisele, T.11
Liu, L.12
Mathers, C.13
-
3
-
-
84855317133
-
Estimating diarrhea mortality among young children in low and middle income countries
-
Walker CL, Aryee MJ, Boschi-Pinto C, Black RE: Estimating diarrhea mortality among young children in low and middle income countries. PLoS One 2012, 7:e29151.
-
(2012)
PLoS One
, vol.7
-
-
Walker, C.L.1
Aryee, M.J.2
Boschi-Pinto, C.3
Black, R.E.4
-
4
-
-
84870045086
-
The Global Enteric Multicenter Study (GEMS): impetus, rationale, and genesis
-
Levine MM, KotloffKL, Nataro JP, Muhsen K: The Global Enteric Multicenter Study (GEMS): impetus, rationale, and genesis. Clin Infect Dis 2012, 55:S215-S224.
-
(2012)
Clin Infect Dis
, vol.55
, pp. S215-S224
-
-
Levine, M.M.1
Kotloff, K.L.2
Nataro, J.P.3
Muhsen, K.4
-
5
-
-
84880508179
-
Burden and aetiology of diarrhoeal disease in infants and young children in developing countries (the Global Enteric Multicenter Study, GEMS): a prospective, case-control study
-
KotloffKL, Nataro JP, Blackwelder WC, Nasrin D, Farag TH, Panchalingam S, Wu Y, Sow SO, Sur D, Breiman RF, Faruque AS, Zaidi AK, Saha D, Alonso PL, Tamboura B, Sanogo D, Onwuchekwa U, Manna B, Ramamurthy T, Kanungo S, Ochieng JB, Omore R, Oundo JO, Hossain A, Das SK, Ahmed S, Qureshi S, Quadri F, Adegbola RA, Antonio M, et al: Burden and aetiology of diarrhoeal disease in infants and young children in developing countries (the Global Enteric Multicenter Study, GEMS): a prospective, case-control study. Lancet 2013, 382:209-222.
-
(2013)
Lancet
, vol.382
, pp. 209-222
-
-
Kotloff, K.L.1
Nataro, J.P.2
Blackwelder, W.C.3
Nasrin, D.4
Farag, T.H.5
Panchalingam, S.6
Wu, Y.7
Sow, S.O.8
Sur, D.9
Breiman, R.F.10
Faruque, A.S.11
Zaidi, A.K.12
Saha, D.13
Alonso, P.L.14
Tamboura, B.15
Sanogo, D.16
Onwuchekwa, U.17
Manna, B.18
Ramamurthy, T.19
Kanungo, S.20
Ochieng, J.B.21
Omore, R.22
Oundo, J.O.23
Hossain, A.24
Das, S.K.25
Ahmed, S.26
Qureshi, S.27
Quadri, F.28
Adegbola, R.A.29
Antonio, M.30
more..
-
6
-
-
79959655657
-
DNACLUST: accurate and efficient clustering of phylogenetic marker genes
-
Ghodsi M, Liu B, Pop M: DNACLUST: accurate and efficient clustering of phylogenetic marker genes. BMC Bioinformatics 2011, 12:271.
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 271
-
-
Ghodsi, M.1
Liu, B.2
Pop, M.3
-
7
-
-
77952243141
-
QIIME allows analysis of high-throughput community sequencing data
-
Caporaso JG, Kuczynski J, Stombaugh J, Bittinger K, Bushman FD, Costello EK, Fierer N, Pena AG, Goodrich JK, Gordon JI, Huttley GA, Kelley ST, Knights D, Koenig JE, Ley RE, Lozupone CA, McDonald D, Muegge BD, Pirrung M, Reeder J, Sevinsky JR, Turnbaugh PJ, Walters WA, Widmann J, Yatsunenko T, Zaneveld J, Knight R: QIIME allows analysis of high-throughput community sequencing data. Nat Methods 2010, 7:335-336.
-
(2010)
Nat Methods
, vol.7
, pp. 335-336
-
-
Caporaso, J.G.1
Kuczynski, J.2
Stombaugh, J.3
Bittinger, K.4
Bushman, F.D.5
Costello, E.K.6
Fierer, N.7
Pena, A.G.8
Goodrich, J.K.9
Gordon, J.I.10
Huttley, G.A.11
Kelley, S.T.12
Knights, D.13
Koenig, J.E.14
Ley, R.E.15
Lozupone, C.A.16
McDonald, D.17
Muegge, B.D.18
Pirrung, M.19
Reeder, J.20
Sevinsky, J.R.21
Turnbaugh, P.J.22
Walters, W.A.23
Widmann, J.24
Yatsunenko, T.25
Zaneveld, J.26
Knight, R.27
more..
-
8
-
-
34547129847
-
Development of the human infant intestinal microbiota
-
Palmer C, Bik EM, DiGiulio DB, Relman DA, Brown PO: Development of the human infant intestinal microbiota. PLoS Biol 2007, 5:e177.
-
(2007)
PLoS Biol
, vol.5
-
-
Palmer, C.1
Bik, E.M.2
DiGiulio, D.B.3
Relman, D.A.4
Brown, P.O.5
-
9
-
-
79952763661
-
Succession of microbial consortia in the developing infant gut microbiome
-
Koenig JE, Spor A, Scalfone N, Fricker AD, Stombaugh J, Knight R, Angenent LT, Ley RE: Succession of microbial consortia in the developing infant gut microbiome. Proc Natl Acad Sci U S A 2011, 108:4578-4585.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 4578-4585
-
-
Koenig, J.E.1
Spor, A.2
Scalfone, N.3
Fricker, A.D.4
Stombaugh, J.5
Knight, R.6
Angenent, L.T.7
Ley, R.E.8
-
10
-
-
0032956143
-
Developmental microbial ecology of the neonatal gastrointestinal tract
-
Mackie RI, Sghir A, Gaskins HR: Developmental microbial ecology of the neonatal gastrointestinal tract. Am J Clin Nutr 1999, 69:1035s-1045s.
-
(1999)
Am J Clin Nutr
, vol.69
, pp. 1035s-1045s
-
-
Mackie, R.I.1
Sghir, A.2
Gaskins, H.R.3
-
11
-
-
0032935617
-
Influences of microbiota on intestinal immune system development
-
Cebra JJ: Influences of microbiota on intestinal immune system development. Am J Clin Nutr 1999, 69:1046S-1051S.
-
(1999)
Am J Clin Nutr
, vol.69
, pp. 1046S-1051S
-
-
Cebra, J.J.1
-
12
-
-
72449145776
-
Influence of early gut microbiota on the maturation of childhood mucosal and systemic immune responses
-
Sjogren YM, Tomicic S, Lundberg A, Bottcher MF, Bjorksten B, Sverremark-Ekstrom E, Jenmalm MC: Influence of early gut microbiota on the maturation of childhood mucosal and systemic immune responses. Clin Exp Allergy 2009, 39:1842-1851.
-
(2009)
Clin Exp Allergy
, vol.39
, pp. 1842-1851
-
-
Sjogren, Y.M.1
Tomicic, S.2
Lundberg, A.3
Bottcher, M.F.4
Bjorksten, B.5
Sverremark-Ekstrom, E.6
Jenmalm, M.C.7
-
13
-
-
34547683600
-
Diversity of the human gastrointestinal tract microbiota revisited
-
Rajilic-Stojanovic M, Smidt H, de Vos WM: Diversity of the human gastrointestinal tract microbiota revisited. Environ Microbiol 2007, 9:2125-2136.
-
(2007)
Environ Microbiol
, vol.9
, pp. 2125-2136
-
-
Rajilic-Stojanovic, M.1
Smidt, H.2
de Vos, W.M.3
-
14
-
-
84862141704
-
Human gut microbiome viewed across age and geography
-
Yatsunenko T, Rey FE, Manary MJ, Trehan I, Dominguez-Bello MG, Contreras M, Magris M, Hidalgo G, Baldassano RN, Anokhin AP, Heath AC, Warner B, Reeder J, Kuczynski J, Caporaso JG, Lozupone CA, Lauber C, Clemente JC, Knights D, Knight R, Gordon JI: Human gut microbiome viewed across age and geography. Nature 2012, 486:222-227.
-
(2012)
Nature
, vol.486
, pp. 222-227
-
-
Yatsunenko, T.1
Rey, F.E.2
Manary, M.J.3
Trehan, I.4
Dominguez-Bello, M.G.5
Contreras, M.6
Magris, M.7
Hidalgo, G.8
Baldassano, R.N.9
Anokhin, A.P.10
Heath, A.C.11
Warner, B.12
Reeder, J.13
Kuczynski, J.14
Caporaso, J.G.15
Lozupone, C.A.16
Lauber, C.17
Clemente, J.C.18
Knights, D.19
Knight, R.20
Gordon, J.I.21
more..
-
15
-
-
84873718952
-
Therapeutic modulation of intestinal dysbiosis
-
Walker AW, Lawley TD: Therapeutic modulation of intestinal dysbiosis. Pharmacol Res 2013, 69:75-86.
-
(2013)
Pharmacol Res
, vol.69
, pp. 75-86
-
-
Walker, A.W.1
Lawley, T.D.2
-
16
-
-
84884127512
-
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences
-
Langille MGI, Zaneveld J, Caporaso JG, McDonald D, Knights D, Reyes JA, Clemente JC, Burkepile DE, Vega Thurber RL, Knight R, Beiko RG, Huttenhower C: Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences. Nat Biotech 2013, 31:814-821.
-
(2013)
Nat Biotech
, vol.31
, pp. 814-821
-
-
Langille, M.G.I.1
Zaneveld, J.2
Caporaso, J.G.3
McDonald, D.4
Knights, D.5
Reyes, J.A.6
Clemente, J.C.7
Burkepile, D.E.8
Vega Thurber, R.L.9
Knight, R.10
Beiko, R.G.11
Huttenhower, C.12
-
17
-
-
77951945504
-
Identifying biologically relevant differences between metagenomic communities
-
Parks DH, Beiko RG: Identifying biologically relevant differences between metagenomic communities. Bioinformatics 2010, 26:715-721.
-
(2010)
Bioinformatics
, vol.26
, pp. 715-721
-
-
Parks, D.H.1
Beiko, R.G.2
-
18
-
-
84888865593
-
Differential abundance analysis for microbial marker-gene surveys
-
Paulson JN, Stine OC, Bravo HC, Pop M: Differential abundance analysis for microbial marker-gene surveys. Nat Methods 2013, 10:1200-1202.
-
(2013)
Nat Methods
, vol.10
, pp. 1200-1202
-
-
Paulson, J.N.1
Stine, O.C.2
Bravo, H.C.3
Pop, M.4
-
19
-
-
14344260968
-
Bacterial diversity promotes community stability and functional resilience after perturbation
-
Girvan MS, Campbell CD, Killham K, Prosser JI, Glover LA: Bacterial diversity promotes community stability and functional resilience after perturbation. Environ Microbiol 2005, 7:301-313.
-
(2005)
Environ Microbiol
, vol.7
, pp. 301-313
-
-
Girvan, M.S.1
Campbell, C.D.2
Killham, K.3
Prosser, J.I.4
Glover, L.A.5
-
20
-
-
0034636310
-
The diversity-stability debate
-
McCann KS: The diversity-stability debate. Nature 2000, 405:228-233.
-
(2000)
Nature
, vol.405
, pp. 228-233
-
-
McCann, K.S.1
-
21
-
-
84866543729
-
Pediatric Case Report of Chronic Colitis Associated With an Unusual Serotype of Streptococcus pneumoniae
-
Shields TM, Chen KD, Gould JM: Pediatric Case Report of Chronic Colitis Associated With an Unusual Serotype of Streptococcus pneumoniae. Infectious Diseases in Clinical Practice 2012, 20:357-358.
-
(2012)
Infectious Diseases in Clinical Practice
, vol.20
, pp. 357-358
-
-
Shields, T.M.1
Chen, K.D.2
Gould, J.M.3
-
22
-
-
84879055206
-
Dynamics of fecal microbial communities in children with diarrhea of unknown etiology and genomic analysis of associated Streptococcus lutetiensis
-
Jin D, Chen C, Li L, Lu S, Li Z, Zhou Z, Jing H, Xu Y, Du P, Wang H, Xiong Y, Zheng H, Bai X, Sun H, Wang L, Ye C, Gottschalk M, Xu J: Dynamics of fecal microbial communities in children with diarrhea of unknown etiology and genomic analysis of associated Streptococcus lutetiensis. BMC Microbiol 2013, 13:141.
-
(2013)
BMC Microbiol
, vol.13
, pp. 141
-
-
Jin, D.1
Chen, C.2
Li, L.3
Lu, S.4
Li, Z.5
Zhou, Z.6
Jing, H.7
Xu, Y.8
Du, P.9
Wang, H.10
Xiong, Y.11
Zheng, H.12
Bai, X.13
Sun, H.14
Wang, L.15
Ye, C.16
Gottschalk, M.17
Xu, J.18
-
23
-
-
84888616865
-
Etiology of diarrhea in bangladeshi infants in the first year of life analyzed using molecular methods
-
Taniuchi M, Sobuz SU, Begum S, Platts-Mills JA, Liu J, Yang Z, Wang XQ, Petri WA Jr, Haque R, Houpt ER: Etiology of diarrhea in bangladeshi infants in the first year of life analyzed using molecular methods. J Infect Dis 2013, 208:1794-1802.
-
(2013)
J Infect Dis
, vol.208
, pp. 1794-1802
-
-
Taniuchi, M.1
Sobuz, S.U.2
Begum, S.3
Platts-Mills, J.A.4
Liu, J.5
Yang, Z.6
Wang, X.Q.7
Petri W.A, Jr.8
Haque, R.9
Houpt, E.R.10
-
24
-
-
85027927719
-
Enterotypes of the human gut microbiome
-
Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto JM, Bertalan M, Borruel N, Casellas F, Fernandez L, Gautier L, Hansen T, Hattori M, Hayashi T, Kleerebezem M, Kurokawa K, Leclerc M, Levenez F, Manichanh C, Nielsen HB, Nielsen T, Pons N, Poultain J, Qin J, Sicheritz-Ponten T, Tims S, et al: Enterotypes of the human gut microbiome. Nature 2011, 473:174-180.
-
(2011)
Nature
, vol.473
, pp. 174-180
-
-
Arumugam, M.1
Raes, J.2
Pelletier, E.3
Le Paslier, D.4
Yamada, T.5
Mende, D.R.6
Fernandes, G.R.7
Tap, J.8
Bruls, T.9
Batto, J.M.10
Bertalan, M.11
Borruel, N.12
Casellas, F.13
Fernandez, L.14
Gautier, L.15
Hansen, T.16
Hattori, M.17
Hayashi, T.18
Kleerebezem, M.19
Kurokawa, K.20
Leclerc, M.21
Levenez, F.22
Manichanh, C.23
Nielsen, H.B.24
Nielsen, T.25
Pons, N.26
Poultain, J.27
Qin, J.28
Sicheritz-Ponten, T.29
Tims, S.30
more..
-
25
-
-
77957075815
-
Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa
-
De Filippo C, Cavalieri D, Di Paola M, Ramazzotti M, Poullet JB, Massart S, Collini S, Pieraccini G, Lionetti P: Impact of diet in shaping gut microbiota revealed by a comparative study in children from Europe and rural Africa. Proc Natl Acad Sci U S A 2010, 107:14691-14696.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 14691-14696
-
-
De Filippo, C.1
Cavalieri, D.2
Di Paola, M.3
Ramazzotti, M.4
Poullet, J.B.5
Massart, S.6
Collini, S.7
Pieraccini, G.8
Lionetti, P.9
-
26
-
-
80053618114
-
Linking long-term dietary patterns with gut microbial enterotypes
-
Wu GD, Chen J, Hoffmann C, Bittinger K, Chen YY, Keilbaugh SA, Bewtra M, Knights D, Walters WA, Knight R, Sinha R, Gilroy E, Gupta K, Baldassano R, Nessel L, Li H, Bushman FD, Lewis JD: Linking long-term dietary patterns with gut microbial enterotypes. Science 2011, 334:105-108.
-
(2011)
Science
, vol.334
, pp. 105-108
-
-
Wu, G.D.1
Chen, J.2
Hoffmann, C.3
Bittinger, K.4
Chen, Y.Y.5
Keilbaugh, S.A.6
Bewtra, M.7
Knights, D.8
Walters, W.A.9
Knight, R.10
Sinha, R.11
Gilroy, E.12
Gupta, K.13
Baldassano, R.14
Nessel, L.15
Li, H.16
Bushman, F.D.17
Lewis, J.D.18
-
27
-
-
61449123021
-
Lactobacillus saerimneri and Lactobacillus ruminis: novel human-derived probiotic strains with immunomodulatory activities
-
Taweechotipatr M, Iyer C, Spinler JK, Versalovic J, Tumwasorn S: Lactobacillus saerimneri and Lactobacillus ruminis: novel human-derived probiotic strains with immunomodulatory activities. FEMS Microbiol Lett 2009, 293:65-72.
-
(2009)
FEMS Microbiol Lett
, vol.293
, pp. 65-72
-
-
Taweechotipatr, M.1
Iyer, C.2
Spinler, J.K.3
Versalovic, J.4
Tumwasorn, S.5
-
28
-
-
77954426370
-
Asymptomatic colonization by Clostridium difficile in infants: implications for disease in later life
-
Jangi S, Lamont JT: Asymptomatic colonization by Clostridium difficile in infants: implications for disease in later life. J Pediatr Gastroenterol Nutr 2010, 51:2-7.
-
(2010)
J Pediatr Gastroenterol Nutr
, vol.51
, pp. 2-7
-
-
Jangi, S.1
Lamont, J.T.2
-
29
-
-
0029001721
-
Enterotoxigenic Bacteroides fragilis
-
Sears CL, Myers LL, Lazenby A, Van Tassell RL: Enterotoxigenic Bacteroides fragilis. Clin Infect Dis 1995, 20:S142-S148.
-
(1995)
Clin Infect Dis
, vol.20
, pp. S142-S148
-
-
Sears, C.L.1
Myers, L.L.2
Lazenby, A.3
Van Tassell, R.L.4
-
30
-
-
44449106055
-
A microbial symbiosis factor prevents intestinal inflammatory disease
-
Mazmanian SK, Round JL, Kasper DL: A microbial symbiosis factor prevents intestinal inflammatory disease. Nature 2008, 453:620-625.
-
(2008)
Nature
, vol.453
, pp. 620-625
-
-
Mazmanian, S.K.1
Round, J.L.2
Kasper, D.L.3
-
31
-
-
84872825519
-
Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States
-
Lin A, Bik EM, Costello EK, Dethlefsen L, Haque R, Relman DA, Singh U: Distinct distal gut microbiome diversity and composition in healthy children from Bangladesh and the United States. PLoS One 2013, 8:e53838.
-
(2013)
PLoS One
, vol.8
-
-
Lin, A.1
Bik, E.M.2
Costello, E.K.3
Dethlefsen, L.4
Haque, R.5
Relman, D.A.6
Singh, U.7
-
32
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, Nielsen T, Pons N, Levenez F, Yamada T, Mende DR, Li J, Xu J, Li S, Li D, Cao J, Wang B, Liang H, Zheng H, Xie Y, Tap J, Lepage P, Bertalan M, Batto JM, Hansen T, Le Paslier D, Linneberg A, Nielsen HB, Pelletier E, Renault P, et al: A human gut microbial gene catalogue established by metagenomic sequencing. Nature 2010, 464:59-65.
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
Manichanh, C.6
Nielsen, T.7
Pons, N.8
Levenez, F.9
Yamada, T.10
Mende, D.R.11
Li, J.12
Xu, J.13
Li, S.14
Li, D.15
Cao, J.16
Wang, B.17
Liang, H.18
Zheng, H.19
Xie, Y.20
Tap, J.21
Lepage, P.22
Bertalan, M.23
Batto, J.M.24
Hansen, T.25
Le Paslier, D.26
Linneberg, A.27
Nielsen, H.B.28
Pelletier, E.29
Renault, P.30
more..
-
33
-
-
84862286169
-
A framework for human microbiome research
-
Human Microbiome Project Consortium: A framework for human microbiome research. Nature 2012, 486:215-221.
-
(2012)
Nature
, vol.486
, pp. 215-221
-
-
-
34
-
-
84859014125
-
Improved detection of bifidobacteria with optimised 16S rRNA-gene based pyrosequencing
-
Sim K, Cox MJ, Wopereis H, Martin R, Knol J, Li MS, Cookson WO, Moffatt MF, Kroll JS: Improved detection of bifidobacteria with optimised 16S rRNA-gene based pyrosequencing. PLoS One 2012, 7:e32543.
-
(2012)
PLoS One
, vol.7
-
-
Sim, K.1
Cox, M.J.2
Wopereis, H.3
Martin, R.4
Knol, J.5
Li, M.S.6
Cookson, W.O.7
Moffatt, M.F.8
Kroll, J.S.9
-
35
-
-
42349100152
-
Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes
-
Frank JA, Reich CI, Sharma S, Weisbaum JS, Wilson BA, Olsen GJ: Critical evaluation of two primers commonly used for amplification of bacterial 16S rRNA genes. Appl Environ Microbiol 2008, 74:2461-2470.
-
(2008)
Appl Environ Microbiol
, vol.74
, pp. 2461-2470
-
-
Frank, J.A.1
Reich, C.I.2
Sharma, S.3
Weisbaum, J.S.4
Wilson, B.A.5
Olsen, G.J.6
-
36
-
-
84884770143
-
Survey of culture, goldengate assay, universal biosensor assay, and 16S rRNA Gene sequencing as alternative methods of bacterial pathogen detection
-
Lindsay B, Pop M, Antonio M, Walker AW, Mai V, Ahmed D, Oundo J, Tamboura B, Panchalingam S, Levine MM, KotloffK, Li S, Magder LS, Paulson JN, Liu B, Ikumapayi U, Ebruke C, Dione M, Adeyemi M, Rance R, Stares MD, Ukhanova M, Barnes B, Lewis I, Ahmed F, Alam MT, Amin R, Siddiqui S, Ochieng JB, Ouma E, et al: Survey of culture, goldengate assay, universal biosensor assay, and 16S rRNA Gene sequencing as alternative methods of bacterial pathogen detection. J Clin Microbiol 2013, 51:3263-3269.
-
(2013)
J Clin Microbiol
, vol.51
, pp. 3263-3269
-
-
Lindsay, B.1
Pop, M.2
Antonio, M.3
Walker, A.W.4
Mai, V.5
Ahmed, D.6
Oundo, J.7
Tamboura, B.8
Panchalingam, S.9
Levine, M.M.10
Kotloff, K.11
Li, S.12
Magder, L.S.13
Paulson, J.N.14
Liu, B.15
Ikumapayi, U.16
Ebruke, C.17
Dione, M.18
Adeyemi, M.19
Rance, R.20
Stares, M.D.21
Ukhanova, M.22
Barnes, B.23
Lewis, I.24
Ahmed, F.25
Alam, M.T.26
Amin, R.27
Siddiqui, S.28
Ochieng, J.B.29
Ouma, E.30
more..
-
37
-
-
22144495054
-
Colonic microbiota signatures across five northern European countries
-
Lay C, Rigottier-Gois L, Holmstrom K, Rajilic M, Vaughan EE, de Vos WM, Collins MD, Thiel R, Namsolleck P, Blaut M, Dore J: Colonic microbiota signatures across five northern European countries. Appl Environ Microbiol 2005, 71:4153-4155.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 4153-4155
-
-
Lay, C.1
Rigottier-Gois, L.2
Holmstrom, K.3
Rajilic, M.4
Vaughan, E.E.5
de Vos, W.M.6
Collins, M.D.7
Thiel, R.8
Namsolleck, P.9
Blaut, M.10
Dore, J.11
-
38
-
-
84878490222
-
Quantitative PCR for detection of shigella improves ascertainment of shigella burden in children with moderate-to-severe diarrhea in low-income countries
-
Lindsay B, Ochieng JB, Ikumapayi UN, Toure A, Ahmed D, Li S, Panchalingam S, Levine MM, KotloffK, Rasko DA, Morris CR, Juma J, Fields BS, Dione M, Malle D, Becker SM, Houpt ER, Nataro JP, Sommerfelt H, Pop M, Oundo J, Antonio M, Hossain A, Tamboura B, Stine OC: Quantitative PCR for detection of shigella improves ascertainment of shigella burden in children with moderate-to-severe diarrhea in low-income countries. J Clin Microbiol 2013, 51:1740-1746.
-
(2013)
J Clin Microbiol
, vol.51
, pp. 1740-1746
-
-
Lindsay, B.1
Ochieng, J.B.2
Ikumapayi, U.N.3
Toure, A.4
Ahmed, D.5
Li, S.6
Panchalingam, S.7
Levine, M.M.8
Kotloff, K.9
Rasko, D.A.10
Morris, C.R.11
Juma, J.12
Fields, B.S.13
Dione, M.14
Malle, D.15
Becker, S.M.16
Houpt, E.R.17
Nataro, J.P.18
Sommerfelt, H.19
Pop, M.20
Oundo, J.21
Antonio, M.22
Hossain, A.23
Tamboura, B.24
Stine, O.C.25
more..
-
39
-
-
84868158515
-
Targeted restoration of the intestinal microbiota with a simple, defined bacteriotherapy resolves relapsing Clostridium difficile disease in mice
-
Lawley TD, Clare S, Walker AW, Stares MD, Connor TR, Raisen C, Goulding D, Rad R, Schreiber F, Brandt C, Deakin LJ, Pickard DJ, Duncan SH, Flint HJ, Clark TG, Parkhill J, Dougan G: Targeted restoration of the intestinal microbiota with a simple, defined bacteriotherapy resolves relapsing Clostridium difficile disease in mice. PLoS Pathog 2012, 8:e1002995.
-
(2012)
PLoS Pathog
, vol.8
-
-
Lawley, T.D.1
Clare, S.2
Walker, A.W.3
Stares, M.D.4
Connor, T.R.5
Raisen, C.6
Goulding, D.7
Rad, R.8
Schreiber, F.9
Brandt, C.10
Deakin, L.J.11
Pickard, D.J.12
Duncan, S.H.13
Flint, H.J.14
Clark, T.G.15
Parkhill, J.16
Dougan, G.17
-
40
-
-
84874672692
-
Intestinal microbiota containing Barnesiella species cures vancomycin-resistant Enterococcus faecium colonization
-
Ubeda C, Bucci V, Caballero S, Djukovic A, Toussaint NC, Equinda M, Lipuma L, Ling L, Gobourne A, No D, Taur Y, Jeng RR, van den Brink MR, Xavier JB, Pamer EG: Intestinal microbiota containing Barnesiella species cures vancomycin-resistant Enterococcus faecium colonization. Infect Immun 2013, 81:965-973.
-
(2013)
Infect Immun
, vol.81
, pp. 965-973
-
-
Ubeda, C.1
Bucci, V.2
Caballero, S.3
Djukovic, A.4
Toussaint, N.C.5
Equinda, M.6
Lipuma, L.7
Ling, L.8
Gobourne, A.9
No, D.10
Taur, Y.11
Jeng, R.R.12
Van den Brink, M.R.13
Xavier, J.B.14
Pamer, E.G.15
-
41
-
-
84876326963
-
Faecal transplantation for recurrent C difficile diarrhoea
-
Senior K: Faecal transplantation for recurrent C difficile diarrhoea. Lancet Infect Dis 2013, 13:200-201.
-
(2013)
Lancet Infect Dis
, vol.13
, pp. 200-201
-
-
Senior, K.1
-
42
-
-
84870010706
-
The Global Enteric Multicenter Study (GEMS) of diarrheal disease in infants and young children in developing countries: epidemiologic and clinical methods of the case/control study
-
KotloffKL, Blackwelder WC, Nasrin D, Nataro JP, Farag TH, van Eijk A, Adegbola RA, Alonso PL, Breiman RF, Faruque AS, Saha D, Sow SO, Sur D, Zaidi AK, Biswas K, Panchalingam S, Clemens JD, Cohen D, Glass RI, Mintz ED, Sommerfelt H, Levine MM: The Global Enteric Multicenter Study (GEMS) of diarrheal disease in infants and young children in developing countries: epidemiologic and clinical methods of the case/control study. Clin Infect Dis 2012, 55:S232-S245.
-
(2012)
Clin Infect Dis
, vol.55
, pp. S232-S245
-
-
Kotloff, K.L.1
Blackwelder, W.C.2
Nasrin, D.3
Nataro, J.P.4
Farag, T.H.5
van Eijk, A.6
Adegbola, R.A.7
Alonso, P.L.8
Breiman, R.F.9
Faruque, A.S.10
Saha, D.11
Sow, S.O.12
Sur, D.13
Zaidi, A.K.14
Biswas, K.15
Panchalingam, S.16
Clemens, J.D.17
Cohen, D.18
Glass, R.I.19
Mintz, E.D.20
Sommerfelt, H.21
Levine, M.M.22
more..
-
43
-
-
84870036414
-
Diagnostic microbiologic methods in the GEMS-1 case/control study
-
Panchalingam S, Antonio M, Hossain A, Mandomando I, Ochieng B, Oundo J, Ramamurthy T, Tamboura B, Zaidi AK, Petri W, Houpt E, Murray P, Prado V, Vidal R, Steele D, Strockbine N, Sansonetti P, Glass RI, Robins-Browne RM, Tauschek M, Svennerholm AM, Berkeley LY, KotloffK, Levine MM, Nataro JP: Diagnostic microbiologic methods in the GEMS-1 case/control study. Clin Infect Dis 2012, 55:S294-S302.
-
(2012)
Clin Infect Dis
, vol.55
, pp. S294-S302
-
-
Panchalingam, S.1
Antonio, M.2
Hossain, A.3
Mandomando, I.4
Ochieng, B.5
Oundo, J.6
Ramamurthy, T.7
Tamboura, B.8
Zaidi, A.K.9
Petri, W.10
Houpt, E.11
Murray, P.12
Prado, V.13
Vidal, R.14
Steele, D.15
Strockbine, N.16
Sansonetti, P.17
Glass, R.I.18
Robins-Browne, R.M.19
Tauschek, M.20
Svennerholm, A.M.21
Berkeley, L.Y.22
Kotloff, K.23
Levine, M.M.24
Nataro, J.P.25
more..
-
44
-
-
84912127340
-
-
nalysis pipeline for GEMS pathogen discovery project
-
Analysis pipeline for GEMS pathogen discovery project. https://github. com/MihaiPop/GEMS-db.
-
-
-
-
45
-
-
84868270724
-
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome
-
McDonald D, Clemente JC, Kuczynski J, Rideout JR, Stombaugh J, Wendel D, Wilke A, Huse S, Hufnagle J, Meyer F, Knight R, Caporaso JG: The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome. Gigascience 2012, 1:7.
-
(2012)
Gigascience
, vol.1
, pp. 7
-
-
McDonald, D.1
Clemente, J.C.2
Kuczynski, J.3
Rideout, J.R.4
Stombaugh, J.5
Wendel, D.6
Wilke, A.7
Huse, S.8
Hufnagle, J.9
Meyer, F.10
Knight, R.11
Caporaso, J.G.12
-
46
-
-
84912083957
-
-
Data generated in GEMS pathogen discovery project
-
Data generated in GEMS pathogen discovery project. http://www.cbcb. umd.edu/datasets/gems-study-diarrheal-disease.
-
-
-
-
47
-
-
84912105913
-
-
GEMS pathogen discovery project: summary page
-
GEMS pathogen discovery project: summary page. http://www.cbcb.umd. edu/research/projects/GEMS-pathogen-discovery.
-
-
-
-
48
-
-
34948842866
-
Accuracy and quality of massively parallel DNA pyrosequencing
-
Huse SM, Huber JA, Morrison HG, Sogin ML, Welch DM: Accuracy and quality of massively parallel DNA pyrosequencing. Genome Biol 2007, 8:R143.
-
(2007)
Genome Biol
, vol.8
-
-
Huse, S.M.1
Huber, J.A.2
Morrison, H.G.3
Sogin, M.L.4
Welch, D.M.5
-
49
-
-
72949107142
-
Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T, Hall JR, Hartmann M, Hollister EB, Lesniewski RA, Oakley BB, Parks DH, Robinson CJ, Sahl JW, Stres B, Thallinger GG, Van Horn DJ, Weber CF: Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 2009, 75:7537-7541.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
Hall, J.R.4
Hartmann, M.5
Hollister, E.B.6
Lesniewski, R.A.7
Oakley, B.B.8
Parks, D.H.9
Robinson, C.J.10
Sahl, J.W.11
Stres, B.12
Thallinger, G.G.13
Van Horn, D.J.14
Weber, C.F.15
-
50
-
-
13444304367
-
The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis
-
Cole JR, Chai B, Farris RJ, Wang Q, Kulam SA, McGarrell DM, Garrity GM, Tiedje JM: The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis. Nucleic Acids Res 2005, 33:D294-D296.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. D294-D296
-
-
Cole, J.R.1
Chai, B.2
Farris, R.J.3
Wang, Q.4
Kulam, S.A.5
McGarrell, D.M.6
Garrity, G.M.7
Tiedje, J.M.8
-
51
-
-
77952254719
-
Alignment and clustering of phylogenetic markers-implications for microbial diversity studies
-
White JR, Navlakha S, Nagarajan N, Ghodsi MR, Kingsford C, Pop M: Alignment and clustering of phylogenetic markers-implications for microbial diversity studies. BMC Bioinformatics 2010, 11:152.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 152
-
-
White, J.R.1
Navlakha, S.2
Nagarajan, N.3
Ghodsi, M.R.4
Kingsford, C.5
Pop, M.6
-
52
-
-
79952750340
-
Vaginal microbiome of reproductive-age women
-
Ravel J, Gajer P, Abdo Z, Schneider GM, Koenig SS, McCulle SL, Karlebach S, Gorle R, Russell J, Tacket CO, Brotman RM, Davis CC, Ault K, Peralta L, Forney LJ: Vaginal microbiome of reproductive-age women. Proc Natl Acad Sci U S A 2011, 108:4680-4687.
-
(2011)
Proc Natl Acad Sci U S A
, vol.108
, pp. 4680-4687
-
-
Ravel, J.1
Gajer, P.2
Abdo, Z.3
Schneider, G.M.4
Koenig, S.S.5
McCulle, S.L.6
Karlebach, S.7
Gorle, R.8
Russell, J.9
Tacket, C.O.10
Brotman, R.M.11
Davis, C.C.12
Ault, K.13
Peralta, L.14
Forney, L.J.15
-
53
-
-
79961181125
-
UCHIME improves sensitivity and speed of chimera detection
-
Edgar RC, Haas BJ, Clemente JC, Quince C, Knight R: UCHIME improves sensitivity and speed of chimera detection. Bioinformatics 2011, 27:2194-2200.
-
(2011)
Bioinformatics
, vol.27
, pp. 2194-2200
-
-
Edgar, R.C.1
Haas, B.J.2
Clemente, J.C.3
Quince, C.4
Knight, R.5
-
54
-
-
33746061683
-
Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB
-
DeSantis TZ, Hugenholtz P, Larsen N, Rojas M, Brodie EL, Keller K, Huber T, Dalevi D, Hu P, Andersen GL: Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB. Appl Environ Microbiol 2006, 72:5069-5072.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5069-5072
-
-
DeSantis, T.Z.1
Hugenholtz, P.2
Larsen, N.3
Rojas, M.4
Brodie, E.L.5
Keller, K.6
Huber, T.7
Dalevi, D.8
Hu, P.9
Andersen, G.L.10
-
55
-
-
0001677717
-
Controlling the false discovery rate-a practical and powerful approach to multiple testing
-
Benjamini Y, Hockberg Y: Controlling the false discovery rate-a practical and powerful approach to multiple testing. J Roy Stat Soc B Met 1995, 57:289-300.
-
(1995)
J Roy Stat Soc B Met
, vol.57
, pp. 289-300
-
-
Benjamini, Y.1
Hockberg, Y.2
-
56
-
-
84865733148
-
Inferring correlation networks from genomic survey data
-
Friedman J, Alm EJ: Inferring correlation networks from genomic survey data. PLoS Comput Biol 2012, 8:e1002687.
-
(2012)
PLoS Comput Biol
, vol.8
-
-
Friedman, J.1
Alm, E.J.2
-
57
-
-
38449101120
-
Integration of biological networks and gene expression data using Cytoscape
-
Cline MS, Smoot M, Cerami E, Kuchinsky A, Landys N, Workman C, Christmas R, Avila-Campilo I, Creech M, Gross B, Hanspers K, Isserlin R, Kelley R, Killcoyne S, Lotia S, Maere S, Morris J, Ono K, Pavlovic V, Pico AR, Vailaya A, Wang PL, Adler A, Conklin BR, Hood L, Kuiper M, Sander C, Schmulevich I, Schwikowski B, Warner GJ, et al: Integration of biological networks and gene expression data using Cytoscape. Nat Protoc 2007, 2:2366-2382.
-
(2007)
Nat Protoc
, vol.2
, pp. 2366-2382
-
-
Cline, M.S.1
Smoot, M.2
Cerami, E.3
Kuchinsky, A.4
Landys, N.5
Workman, C.6
Christmas, R.7
Avila-Campilo, I.8
Creech, M.9
Gross, B.10
Hanspers, K.11
Isserlin, R.12
Kelley, R.13
Killcoyne, S.14
Lotia, S.15
Maere, S.16
Morris, J.17
Ono, K.18
Pavlovic, V.19
Pico, A.R.20
Vailaya, A.21
Wang, P.L.22
Adler, A.23
Conklin, B.R.24
Hood, L.25
Kuiper, M.26
Sander, C.27
Schmulevich, I.28
Schwikowski, B.29
Warner, G.J.30
more..
|