메뉴 건너뛰기




Volumn 515, Issue 7526, 2014, Pages 216-221

The contribution of de novo coding mutations to autism spectrum disorder

(47)  Iossifov, Ivan a   O'Roak, Brian J b,c   Sanders, Stephan J d,e   Ronemus, Michael a   Krumm, Niklas b   Levy, Dan a   Stessman, Holly A b   Witherspoon, Kali T b   Vives, Laura b   Patterson, Karynne E b   Smith, Joshua D b   Paeper, Bryan b   Nickerson, Deborah A b   Dea, Jeanselle d   Dong, Shan e,f   Gonzalez, Luis E g   Mandell, Jeffrey D d   Mane, Shrikant M e   Murtha, Michael T g   Sullivan, Catherine A g   more..


Author keywords

[No Author keywords available]

Indexed keywords

DISABILITY; GENE EXPRESSION; MEDICAL GEOGRAPHY; MUTATION;

EID: 84912101541     PISSN: 00280836     EISSN: 14764687     Source Type: Journal    
DOI: 10.1038/nature13908     Document Type: Article
Times cited : (1859)

References (49)
  • 1
    • 84893844183 scopus 로고    scopus 로고
    • Disentangling the heterogeneity of autismspectrum disorder through genetic findings
    • Jeste, S. S.&Geschwind, D. H. Disentangling the heterogeneity of autismspectrum disorder through genetic findings. Nature Rev. Neurol. 10, 74-81 (2014).
    • (2014) Nature Rev. Neurol. , vol.10 , pp. 74-81
    • Jeste, S.S.1    Geschwind, D.H.2
  • 2
    • 79958074870 scopus 로고    scopus 로고
    • Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism
    • Sanders, S. J. et al. Multiple recurrent de novo CNVs, including duplications of the 7q11.23 Williams syndrome region, are strongly associated with autism. Neuron 70, 863-885 (2011).
    • (2011) Neuron , vol.70 , pp. 863-885
    • Sanders, S.J.1
  • 3
    • 79958032110 scopus 로고    scopus 로고
    • Rare de novo and transmitted copy-number variation in autistic spectrum disorders
    • Levy, D. et al. Rare de novo and transmitted copy-number variation in autistic spectrum disorders. Neuron 70, 886-897 (2011).
    • (2011) Neuron , vol.70 , pp. 886-897
    • Levy, D.1
  • 4
    • 40749089626 scopus 로고    scopus 로고
    • Structural variation of chromosomes in autism spectrum disorder
    • Marshall, C. R. et al. Structural variation of chromosomes in autism spectrum disorder. Am. J. Hum. Genet. 82, 477-488 (2008).
    • (2008) Am. J. Hum. Genet. , vol.82 , pp. 477-488
    • Marshall, C.R.1
  • 5
    • 34247481814 scopus 로고    scopus 로고
    • Strong association of de novo copy number mutations with autism
    • Sebat, J. et al. Strong association of de novo copy number mutations with autism. Science 316, 445-449 (2007).
    • (2007) Science , vol.316 , pp. 445-449
    • Sebat, J.1
  • 6
    • 84860780495 scopus 로고    scopus 로고
    • De novo mutations revealed by whole-exome sequencing are strongly associated with autism
    • Sanders, S. J. et al. De novo mutations revealed by whole-exome sequencing are strongly associated with autism. Nature 485, 237-241 (2012).
    • (2012) Nature , vol.485 , pp. 237-241
    • Sanders, S.J.1
  • 7
    • 84860741138 scopus 로고    scopus 로고
    • Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations
    • O'Roak, B. J. et al. Sporadic autism exomes reveal a highly interconnected protein network of de novo mutations. Nature 485, 246-250 (2012).
    • (2012) Nature , vol.485 , pp. 246-250
    • O'roak, B.J.1
  • 8
    • 84860297457 scopus 로고    scopus 로고
    • De novo gene disruptions in children on the autistic spectrum
    • Iossifov, I. et al. De novo gene disruptions in children on the autistic spectrum. Neuron 74, 285-299 (2012).
    • (2012) Neuron , vol.74 , pp. 285-299
    • Iossifov, I.1
  • 9
    • 84892799819 scopus 로고    scopus 로고
    • The role of de novo mutations in the genetics of autism spectrum disorders
    • Ronemus, M., Iossifov, I., Levy, D. & Wigler, M. The role of de novo mutations in the genetics of autism spectrum disorders. Nature Rev. Genet. 15, 133-141 (2014).
    • (2014) Nature Rev. Genet. , vol.15 , pp. 133-141
    • Ronemus, M.1    Iossifov, I.2    Levy, D.3    Wigler, M.4
  • 10
    • 34547886497 scopus 로고    scopus 로고
    • A unified genetic theory for sporadic and inherited autism
    • Zhao, X. et al. A unified genetic theory for sporadic and inherited autism. Proc. Natl Acad. Sci. USA 104, 12831-12836 (2007).
    • (2007) Proc. Natl Acad. Sci. USA , vol.104 , pp. 12831-12836
    • Zhao, X.1
  • 11
    • 77957927440 scopus 로고    scopus 로고
    • The Simons Simplex Collection: A resource for identification of autism genetic risk factors
    • Fischbach, G. D. & Lord, C. The Simons Simplex Collection: a resource for identification of autism genetic risk factors. Neuron 68, 192-195 (2010).
    • (2010) Neuron , vol.68 , pp. 192-195
    • Fischbach, G.D.1    Lord, C.2
  • 12
    • 84868214089 scopus 로고    scopus 로고
    • Estimating the human mutation rate using autozygosity in a founder population
    • Campbell, C. D. et al. Estimating the human mutation rate using autozygosity in a founder population. Nature Genet. 44, 1277-1281 (2012).
    • (2012) Nature Genet. , vol.44 , pp. 1277-1281
    • Campbell, C.D.1
  • 13
    • 84871595000 scopus 로고    scopus 로고
    • Whole-genome sequencing in autismidentifies hot spots for de novo germline mutation
    • Michaelson, J. J. et al. Whole-genome sequencing in autismidentifies hot spots for de novo germline mutation. Cell 151, 1431-1442 (2012).
    • (2012) Cell , vol.151 , pp. 1431-1442
    • Michaelson, J.J.1
  • 14
    • 79959340504 scopus 로고    scopus 로고
    • Pervasive multinucleotide mutational events in eukaryotes
    • Schrider, D. R., Hourmozdi, J. N. & Hahn, M. W. Pervasive multinucleotide mutational events in eukaryotes. Curr. Biol. 21, 1051-1054 (2011).
    • (2011) Curr. Biol. , vol.21 , pp. 1051-1054
    • Schrider, D.R.1    Hourmozdi, J.N.2    Hahn, M.W.3
  • 15
    • 84865208871 scopus 로고    scopus 로고
    • Rate of de novo mutations and the importance of father's age to disease risk
    • Kong, A. et al. Rate of de novo mutations and the importance of father's age to disease risk. Nature 488, 471-475 (2012).
    • (2012) Nature , vol.488 , pp. 471-475
    • Kong, A.1
  • 16
    • 84860712363 scopus 로고    scopus 로고
    • Patterns and rates of exonic de novo mutations in autism spectrum disorders
    • Neale, B. M. et al. Patterns and rates of exonic de novo mutations in autism spectrum disorders. Nature 485, 242-245 (2012).
    • (2012) Nature , vol.485 , pp. 242-245
    • Neale, B.M.1
  • 17
    • 79960779323 scopus 로고    scopus 로고
    • FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism
    • Darnell, J. C. et al. FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism. Cell 146, 247-261 (2011).
    • (2011) Cell , vol.146 , pp. 247-261
    • Darnell, J.C.1
  • 18
    • 80054993342 scopus 로고    scopus 로고
    • Spatio-temporal transcriptome of the human brain
    • Kang, H. J. et al. Spatio-temporal transcriptome of the human brain. Nature 478, 483-489 (2011).
    • (2011) Nature , vol.478 , pp. 483-489
    • Kang, H.J.1
  • 19
    • 79959262465 scopus 로고    scopus 로고
    • Transcriptomic analysis of autistic brain reveals convergent molecular pathology
    • Voineagu, I. et al. Transcriptomic analysis of autistic brain reveals convergent molecular pathology. Nature 474, 380-384 (2011).
    • (2011) Nature , vol.474 , pp. 380-384
    • Voineagu, I.1
  • 20
    • 78650680152 scopus 로고    scopus 로고
    • Characterization of the proteome, diseases and evolution of the human postsynaptic density
    • Bayés, A. et al. Characterization of the proteome, diseases and evolution of the human postsynaptic density. Nature Neurosci. 14, 19-21 (2011).
    • (2011) Nature Neurosci. , vol.14 , pp. 19-21
    • Bayés, A.1
  • 21
    • 78651286166 scopus 로고    scopus 로고
    • TheMouse Genome Database (MGD): Premier model organism resource for mammalian genomics and genetics
    • Blake, J. A., Bult, C. J., Kadin, J. A., Richardson, J. E.&Eppig, J. T. TheMouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics. Nucleic Acids Res. 39, D842-D848 (2011).
    • (2011) Nucleic Acids Res. , vol.39 , pp. D842-D848
    • Blake, J.A.1    Bult, C.J.2    Kadin, J.A.3    Richardson, J.E.4    Eppig, J.T.5
  • 22
    • 41949118715 scopus 로고    scopus 로고
    • Network properties of genes harboring inherited disease mutations
    • Feldman, I., Rzhetsky, A. & Vitkup, D. Network properties of genes harboring inherited disease mutations. Proc. Natl Acad. Sci. USA 105, 4323-4328 (2008).
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 4323-4328
    • Feldman, I.1    Rzhetsky, A.2    Vitkup, D.3
  • 23
    • 84889583293 scopus 로고    scopus 로고
    • Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism
    • Willsey, A. J. et al. Coexpression networks implicate human midfetal deep cortical projection neurons in the pathogenesis of autism. Cell 155, 997-1007 (2013).
    • (2013) Cell , vol.155 , pp. 997-1007
    • Willsey, A.J.1
  • 24
    • 34249735268 scopus 로고    scopus 로고
    • The epidemiology of autismspectrumdisorders
    • Newschaffer, C. J. et al. The epidemiology of autismspectrumdisorders. Annu. Rev. Public Health 28, 235-258 (2007).
    • (2007) Annu. Rev. Public Health , vol.28 , pp. 235-258
    • Newschaffer, C.J.1
  • 25
    • 84868686559 scopus 로고    scopus 로고
    • Diagnostic exome sequencing in persons with severe intellectual disability
    • de Ligt, J. et al. Diagnostic exome sequencing in persons with severe intellectual disability. N. Engl. J. Med. 367, 1921-1929 (2012).
    • (2012) N. Engl. J. Med. , vol.367 , pp. 1921-1929
    • De Ligt, J.1
  • 26
    • 84893919352 scopus 로고    scopus 로고
    • De novo mutations in schizophrenia implicate synaptic networks
    • Fromer, M. et al. De novo mutations in schizophrenia implicate synaptic networks. Nature 506, 179-184 (2014).
    • (2014) Nature , vol.506 , pp. 179-184
    • Fromer, M.1
  • 27
    • 84883465830 scopus 로고    scopus 로고
    • Genetic relationship between five psychiatric disorders estimated from genome-wide SNPs
    • Lee, S. H. et al. Genetic relationship between five psychiatric disorders estimated from genome-wide SNPs. Nature Genet. 45, 984-994 (2013).
    • (2013) Nature Genet. , vol.45 , pp. 984-994
    • Lee, S.H.1
  • 28
    • 84901246368 scopus 로고    scopus 로고
    • De novo mutations in schizophrenia implicate chromatin remodeling and support a genetic overlap with autism and intellectual disability
    • McCarthy, S. E. et al. De novo mutations in schizophrenia implicate chromatin remodeling and support a genetic overlap with autism and intellectual disability. Mol. Psychiatry 19, 652-658 (2014).
    • (2014) Mol. Psychiatry , vol.19 , pp. 652-658
    • McCarthy, S.E.1
  • 29
    • 84868543309 scopus 로고    scopus 로고
    • Range of genetic mutations associated with severe non-syndromic sporadic intellectual disability: An exome sequencing study
    • Rauch, A. et al. Range of genetic mutations associated with severe non-syndromic sporadic intellectual disability: an exome sequencing study. Lancet 380, 1674-1682 (2012).
    • (2012) Lancet , vol.380 , pp. 1674-1682
    • Rauch, A.1
  • 30
    • 84871448593 scopus 로고    scopus 로고
    • Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders
    • O'Roak, B. J. et al. Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders. Science 338, 1619-1622 (2012).
    • (2012) Science , vol.338 , pp. 1619-1622
    • O'roak, B.J.1
  • 31
    • 84856803144 scopus 로고    scopus 로고
    • HistoneH1recruitment byCHD8is essential for suppression of the Wnt-b-catenin signaling pathway
    • Nishiyama, M., Skoultchi, A. I.&Nakayama,K. I. HistoneH1recruitment byCHD8is essential for suppression of the Wnt-b-catenin signaling pathway. Mol. Cell. Biol. 32, 501-512 (2012).
    • (2012) Mol. Cell. Biol. , vol.32 , pp. 501-512
    • Nishiyama, M.1    Skoultchi, A.I.2    Nakayama, K.I.3
  • 32
    • 84866294456 scopus 로고    scopus 로고
    • Gene balance hypothesis: Connecting issues of dosage sensitivity across biological disciplines
    • Birchler, J. A. & Veitia, R. A. Gene balance hypothesis: connecting issues of dosage sensitivity across biological disciplines. Proc. Natl Acad. Sci. USA 109, 14746-14753 (2012).
    • (2012) Proc. Natl Acad. Sci. USA , vol.109 , pp. 14746-14753
    • Birchler, J.A.1    Veitia, R.A.2
  • 33
    • 84884905922 scopus 로고    scopus 로고
    • Where genotype is not predictive of phenotype: Towards an understanding of the molecular basis of reduced penetrance in human inherited disease
    • Cooper, D. N., Krawczak, M., Polychronakos, C., Tyler-Smith, C. & Kehrer-Sawatzki, H. Where genotype is not predictive of phenotype: towards an understanding of the molecular basis of reduced penetrance in human inherited disease. Hum. Genet. 132, 1077-1130 (2013).
    • (2013) Hum. Genet. , vol.132 , pp. 1077-1130
    • Cooper, D.N.1    Krawczak, M.2    Polychronakos, C.3    Tyler-Smith, C.4    Kehrer-Sawatzki, H.5
  • 34
    • 79960898814 scopus 로고    scopus 로고
    • Defects in translational regulation contributing to human cognitive and behavioral disease
    • Darnell, J. C. Defects in translational regulation contributing to human cognitive and behavioral disease. Curr. Opin. Genet. Dev. 21, 465-473 (2011).
    • (2011) Curr. Opin. Genet. Dev. , vol.21 , pp. 465-473
    • Darnell, J.C.1
  • 35
    • 84879601595 scopus 로고    scopus 로고
    • Gene dosage effects: Nonlinearities, genetic interactions, and dosage compensation
    • Veitia, R. A., Bottani, S. & Birchler, J. A. Gene dosage effects: nonlinearities, genetic interactions, and dosage compensation. Trends Genet. 29, 385-393 (2013).
    • (2013) Trends Genet. , vol.29 , pp. 385-393
    • Veitia, R.A.1    Bottani, S.2    Birchler, J.A.3
  • 36
    • 84872506987 scopus 로고    scopus 로고
    • Phenotypic impact of genomic structural variation: Insights from and for human disease
    • Weischenfeldt, J., Symmons, O., Spitz, F. & Korbel, J. O. Phenotypic impact of genomic structural variation: insights from and for human disease. Nature Rev. Genet. 14, 125-138 (2013).
    • (2013) Nature Rev. Genet. , vol.14 , pp. 125-138
    • Weischenfeldt, J.1    Symmons, O.2    Spitz, F.3    Korbel, J.O.4
  • 38
    • 84901424141 scopus 로고    scopus 로고
    • Random monoallelic expression: Regulating gene expression one allele at a time
    • Eckersley-Maslin, M. A. & Spector, D. L. Random monoallelic expression: regulating gene expression one allele at a time. Trends Genet. 30, 237-244 (2014).
    • (2014) Trends Genet. , vol.30 , pp. 237-244
    • Eckersley-Maslin, M.A.1    Spector, D.L.2
  • 39
    • 84893536511 scopus 로고    scopus 로고
    • Randomor stochasticmonoallelic expressed genes are enriched for neurodevelopmental disorder candidate genes
    • Jeffries, A. R. et al.Randomor stochasticmonoallelic expressed genes are enriched for neurodevelopmental disorder candidate genes. PLoS ONE 8, e85093 (2013).
    • (2013) PLoS ONE , vol.8
    • Jeffries, A.R.1
  • 40
    • 79957589237 scopus 로고    scopus 로고
    • Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations
    • O'Roak, B. J. et al. Exome sequencing in sporadic autism spectrum disorders identifies severe de novo mutations. Nature Genet. 43, 585-589 (2011).
    • (2011) Nature Genet. , vol.43 , pp. 585-589
    • O'roak, B.J.1
  • 41
    • 84907528158 scopus 로고    scopus 로고
    • MIPgen: Optimized modeling and design of molecular inversion probes for targeted resequencing
    • Boyle, E. A., O'Roak, B. J., Martin, B. K., Kumar, A.& Shendure, J. MIPgen: optimized modeling and design of molecular inversion probes for targeted resequencing. Bioinformatics 30, 2670-2672 (2014).
    • (2014) Bioinformatics , vol.30 , pp. 2670-2672
    • Boyle, E.A.1    O'roak, B.J.2    Martin, B.K.3    Kumar, A.4    Shendure, J.5
  • 42
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li, H. & Durbin, R. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 43
    • 77956295988 scopus 로고    scopus 로고
    • The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
    • McKenna, A. et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010).
    • (2010) Genome Res. , vol.20 , pp. 1297-1303
    • McKenna, A.1
  • 44
    • 84921783122 scopus 로고    scopus 로고
    • Accurate de novo and transmitted indel detection in exome-capture data using microassembly
    • Narzisi, G. et al. Accurate de novo and transmitted indel detection in exome-capture data using microassembly. Nature Methods 11, 1033-1036 (2014).
    • (2014) Nature Methods , vol.11 , pp. 1033-1036
    • Narzisi, G.1
  • 45
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence Alignment/Map format and SAMtools
    • Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 46
    • 33748297511 scopus 로고    scopus 로고
    • Advancing paternal age and autism
    • Reichenberg, A. et al. Advancing paternal age and autism. Arch. Gen. Psychiatry 63, 1026-1032 (2006).
    • (2006) Arch. Gen. Psychiatry , vol.63 , pp. 1026-1032
    • Reichenberg, A.1
  • 48
    • 84881193129 scopus 로고    scopus 로고
    • Spatial and temporal mapping of de novo mutations in schizophrenia to a fetal prefrontal cortical network
    • Gulsuner, S. et al. Spatial and temporal mapping of de novo mutations in schizophrenia to a fetal prefrontal cortical network. Cell 154, 518-529 (2013).
    • (2013) Cell , vol.154 , pp. 518-529
    • Gulsuner, S.1
  • 49
    • 80052273655 scopus 로고    scopus 로고
    • Exome sequencing supports a de novo mutational paradigm for schizophrenia
    • Xu, B. et al. Exome sequencing supports a de novo mutational paradigm for schizophrenia. Nature Genet. 43, 864-868 (2011).
    • (2011) Nature Genet. , vol.43 , pp. 864-868
    • Xu, B.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.