Expression Profile of Maize MicroRNAs Corresponding to Their Target Genes Under Drought Stress

Biochemical Genetics

Volumn 52, Issue 11-12, 2014, Pages 474-493

  Wang, Ying Ge ^a   An, Ming ^a   Zhou, Shu Feng ^a   She, Yue Hui ^a   Li, Wan Chen ^a   Fu, Feng Ling ^a  

^a SICHUAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

Drought; Maize; MicroRNA; Target gene

Indexed keywords

LOCKED NUCLEIC ACID; MICRORNA; TRANSCRIPTOME;

ABIOTIC STRESS; ARTICLE; CONTROLLED STUDY; DROUGHT STRESS; FEEDBACK SYSTEM; GENE EXPRESSION; GENE EXPRESSION PROFILING; GENE ONTOLOGY; GENE TARGETING; GENOTYPE; MAIZE; MICROARRAY ANALYSIS; NONHUMAN; OLIGONUCLEOTIDE PROBE; PLANT GENETICS; PLANT OSMOTIC POTENTIAL; PROTEIN CROSS LINKING; PROTEIN EXPRESSION; PROTEIN METABOLISM; PROTEIN MODIFICATION; PROTEIN PHOSPHORYLATION; PROTEIN TRANSPORT; RNA HYBRIDIZATION; RNA ISOLATION; SIGNAL TRANSDUCTION; TRANSCRIPTION REGULATION; ULTRAVIOLET SPECTROPHOTOMETRY; DROUGHT; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; PHYSIOLOGICAL STRESS;

ZEA MAYS;

DROUGHTS; GENE EXPRESSION REGULATION, PLANT; MICRORNAS; SIGNAL TRANSDUCTION; STRESS, PHYSIOLOGICAL; TRANSCRIPTOME; ZEA MAYS;

EID: 84911980776     PISSN: 00062928     EISSN: 15734927     Source Type: Journal    
DOI: 10.1007/s10528-014-9661-x     Document Type: Article

References (52)

1. Allen RS, Li J, Alonso-Peral MM, White RG, Gubler F, Millar AA (2010) MicroR159 regulation of most conserved targets in Arabidopsis has negligible phenotypic effects. Silence 1:18
2. Audic S, Claverie JM (1997) The significance of digital gene expression profiles. Genome Res 7:986–995
3. Axtell MJ, Snyder JA, Bartel DP (2007) Common functions for diverse small RNAs of land plants. Plant Cell 19:1750–1769
4. Baisakh N, Subudhi PK (2009) Heat stress alters the expression of salt stress induced genes in smooth cordgrass (Spartina alterniflora L.). Plant Physiol Biochem 47:232–235
5. Bonnet E, Wuyts J, Rouze P, van de Peer Y (2004) Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences. Bioinformatics 20:2911–2917
6. Chen X, Yang R-F, Li W-C, Fu F-L (2010) Identification of 21 microRNAs in maize and their differential expression under drought stress. Afr J Biotechnol 9:4741–4753
7. Deikman J, Petracek M, Heard JE (2012) Drought tolerance through biotechnology: improving translation from the laboratory to farmer’s fields. Curr Opin Biotechnol 23:243–250
8. Diedhiou CJ, Popova OV, Dietz K-J, Golldack D (2008) The SNF1-type serine-threonine protein kinase SAPK4 regulates stress-responsive gene expression in rice. BMC Plant Biol 8:49
9. Ding D, Zhang L, Wang H, Liu Z, Zhang Z, Zheng Y (2009) Differential expression of miRNAs in response to salt stress in maize roots. Ann Bot 103:29–38
10. Earley K, Smith MR, Weber R, Gregory BD, Poethig RS (2010) An endogenous F-box protein regulates ARGONAUTE1 in Arabidopsis thaliana. Silence 1:15
11. Franza S, Ehlerta B, Liesea A, Kurtha J, Cazaleb A-C, Romeis T (2011) Calcium-dependent protein kinase CPK21 functions in abiotic stress response in Arabidopsis thaliana. Mol Plant 4:83–96
12. Fu FL, Feng ZL, Gao SB, Zhou SF, Li WC (2008) Evaluation and quantitative inheritance of several drought-relative traits in maize. Agric Sci China 7:280–290
13. Henriksson E, Olsson ASB, Johannesson H, Hanson J, Engstrom P, Soderman E (2005) Homeodomain leucine zipper class I genes in Arabidopsis. Expression patterns and phylogeneitc realationships. Plant Physiol 139:509–518
14. Jacquot J-P, Eklund H, Rouhier N, Schurmann P (2009) Structural and evolutionary aspects of thioredoxin reductases in photosynthetic organisms. Trends Plant Sci 14:336–343
15. Jiang T, Fountain J, Davis G, Kemerait R, Scully B, Lee RD, Guo B (2012) Root morphology and gene expression analysis in response to drought stress in maize (Zea mays). Plant Mol Biol Rep 30:360–369
16. Jiao Y, Song W, Zhang M, Lai J (2011) Identification of novel maize miRNAs by measureing the precision of precursor processing. BMC Plant Biol 11:141
17. Kadioglu A, Saruhan N, Saglam A, Terzi R, Acet T (2011) Exogenous salicylic acid alleviates effects of long term drought stress and delays leaf rolling by inducing antioxidant system. Plant Growth Regul 64:27–37
18. Khraiwesh B, Zhu J-K, Zhu J (2012) Role of miRNAs and siRNAs in biotic and abiotic stress responses of plants. Biochim Biophys Acta 1819:137–148
19. Kim SW, Li Z, Moore PS, Monaghan AP, Chang Y, Nichols M, John B (2010) A sensitive nonradioactive northern blot method to detect small RNAs. Nucleic Acids Res 38:e98
20. Kufner I, Koch W (2008) Stress regulated members of the plant organic cation transporter family are localized to the vacuolar membrane. BMC Res Note 1:43
21. Lackey E, Ng DW, Chen ZJ (2010) RNAi-mediated down-regulation of DCL1 and AGO1 induces developmental changes in resynthesized Arabidopsis allotetraploids. New Phytol 186:207–215
22. Lin F, Xu J, Shi J, Li H, Li B (2010) Molecular cloning and characterization of a novel glyoxalase I gene TaGly I in wheat (Triticum aestivum L.). Mol Biol Rep 37:729–735
23. Liu H–H, Tian X, Li Y-J, Wu C-A, Zheng C–C (2008) Microarray-based analysis of stress-regulated microRNAs in Arabidopsis thaliana. RNA 14:836–843
24. Liu Q, Chen Y-Q (2010) A new mechanism in plant engineering: the potential roles of microRNAs in molecular breeding for crop improvement. Biotechnol Adv 28:301–307
25. Lu SF, Sun YH, Chiang VL (2008) Stress-responsive microRNAs in Populus. Plant J 55:131–151
26. Lu Y, Hao Z, Xie C, Crossa J, Araus J-L, Gao S, Vivek BS, Magorokosho C, Mugo S, Makumbi D, Taba S, Pan G, Li X, Rong T, Zhang S, Xu Y (2011) Large-scale screening for maize drought resistance using multiple selection criteria evaluated under water-stressed and well-watered environments. Field Crop Res 124:37–45
27. Mao XG, Zhang HY, Tian SJ, Chang XP, Jing RL (2010) TaSnRK2.4, an SNF1-type serine/threonine protein kinase of wheat (Triticum aestivum L.), confers enhanced multi stress tolerance in Arabidopsis. J Exp Bot 61:683–696
28. Meng Y, Huang F, Shi Q, Cao J, Chen D, Zhang J, Ni J, Wu P, Chen M (2009) Genome-wide survey of rice microRNAs and microRNA target pairs in the root of a novel auxin-resistant mutant. Planta 230:883–898
29. Michel BE, Kaufmann MR (1973) The osmotic potential of polyethylene glycol 6000. Plant Physiol 51:914–916
30. Monroe-Augustus M, Zolman BK, Bartel B (2003) IBR5, a dual-specificity phosphatase-like protein modulating auxin and abscisic acid responsiveness in Arabidopsis. Plant Cell 15:2979–2991
31. Nayidu NK, Wang L, Xie W, Zhang C, Fan C, Lian X, Zhang Q, Xiong L (2002) Comprehensive sequence and expression profile analysis of PEX11 gene family in rice. Gene 412:59–70
32. Neumann PM (2008) Coping mechanisms for crop plants in drought-prone environments. Ann Bot 101:901–907
33. Palatnik JF, Allen E, Wu X, Schommer C, Schwab R, Carrington JC, Weigel D (2003) Control of leaf morphogenesis by microRNAs. Nature 425:257–263
34. Rafudeen S, Gxaba G, Makgoke G, Bradley G, Pironcheva G, Raitt L, Irving H, Gehring C (2003) A role for plant natriuretic peptide immuno-analogues in NaCl- and drought-stress responses. Physiol Plant 119:554–562
35. Reyes JL, Chua NH (2007) ABA induction of miR159 controls transcript levels of two MYB factors during Arabidopsis seed germination. Plant J 49:592–606
36. Ruan XM, Luo F, Li DD, Zhang J, Liu ZH, Xu WL, Huang GQ, Li XB (2011) Cotton BCP genes encoding putative blue copper binding proteins are functionally expressed in fiber development and involved in response to high-salinity and heavy metal stresses. Physiol Plant 141:71–83
37. Seo PJ, Ryu J, Kang SK, Park C-M (2011) Modulation of sugar metabolism by an INDETERMINATE DOMAIN transcription factor contributes to photoperiodic flowering in Arabidopsis. Plant J 65:418–429
38. Shinozaki K, Yamaguchi-Shinozaki K (2007) Gene networks involved in drought stress response and tolerance. J Exp Bot 58:221–227
39. Sunkar R, Li Y-F, Jagadeeswaran G (2012) Functions of microRNAs in plant stress responses. Trend Plant Sci 17:196–203
40. Tambo JA, Abdoulaye T (2012) Climate change and agricultural technology adoption the case of drought tolerant maize in rural Nigeria. Mitig Adapt Strategy Global Change 17:277–292
41. Tran LSP, Nakashima K, Sakuma Y, Simpson SD, Fujita Y, Maruyama K, Fujita M, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2004) Isolation and functional analysis of Arabidopsis stressinducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter. Plant Cell 16:2481–2498
42. Valoczi A, Hornyik C, Varga N, Burgyan J, Kauppinen S, Havelda Z (2004) Sensitive and specific detection of microRNAs by northern blot analysis using LNA-modified oligonucleotide probes. Nucleic Acids Res 32:e175
43. Vaucheret H (2009) AGO1 homeostasis involves differential production of 21-nt and 22-nt miR168 species by miR168a and miR168b. PLoS One 4:e6442
44. Vaucheret H, Mallory AC, Bartel DP (2006) AGO1 homeostasis entails coexpression of minR168 and AGO1 and preferential stabilization of miR168 by AGO1. Mol Cell 22:129–136
45. Wang T, Chen L, Zhao M, Tian Q, Zhang W-H (2011) Identification of drought-responsive microRNAs in Medicago truncatula by genome-wide high-throughput sequencing. BMC Genomics 12:367
46. Wei L, Zhang D, Xiang F, Zhang Z (2009) Differentially expressed miRNAs potentially involved in the regulation of defense mechanism to drought stress in maize seedlings. Int J Plant Sci 170:979–989
47. Wu J, Qu T, Chen S, Zhao Z, An L (2009) Molecular cloning and characterization of a γ-glutamylcysteine synthetase gene from Chorispora bungeana. Protoplasma 235:27–36
48. Zhang BH, Pan XP, Cannon CH, Cobb GP, Anderson TA (2006) Conservation and divergence of plant microRNA genes. Plant J 46:243–259
49. Zhang L, Chia J-M, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D (2009) A genome-wide characterization of microRNA genes in maize. PLoS Genet 5:e1000716
50. Zhang Z, Wei L, Zou X, Tao Y, Liu Z, Zheng Y (2008) Submergence-responsive microRNAs are potentially involved in the regulation of morphological and metabolic adaptations in maize root cells. Ann Bot 102:509–519
51. Zhang Z, Lin H, Shen Y, Gao J, Xiang K, Liu L, Ding H, Yuan G, Lan H, Zhou S, Zhao M, Gao S, Rong T, Pan G (2012) Cloning and characterization of miRNAs from maize seedling roots under low phosphorus stress. Mol Biol Rep 39:8137–8146
52. Zhao M, Tai H, Sun S, Zhang F, Xu Y, Li W-X (2012) Cloning and characterization of maize miRNAs involved in responses to nitrogen efficiency. PLoS One 7:e29669