Aquimarina penaei sp. nov., isolated from intestinal tract contents of Pacific white shrimp, Penaeus vannamei

Antonie van Leeuwenhoek, International Journal of General and Molecular Microbiology

Volumn 106, Issue 6, 2014, Pages 1223-1229

  Li, Xiaoyi ^a,b   Wang, Liping ^a   Huang, Hui ^a   Lai, Qiliang ^a   Shao, Zongze ^a,b  

^a SOA Fujian Collaborative Innovation Center for Exploitation and Utilization of Marine Biological Resources Key Laboratory of Marine Genetic   (China)

^b NINGBO UNIVERSITY   (China)

Author keywords

Aquimarina penaei sp. nov; Penaeus vannamei; Taxonomy

Indexed keywords

AMPICILLIN; CARBENICILLIN; CEFALEXIN; CEFAZOLIN; CEFOPERAZONE; CEFRADINE; CHLORAMPHENICOL; CIPROFLOXACIN; CLINDAMYCIN; COTRIMOXAZOLE; DOXYCYCLINE; ERYTHROMYCIN; FURAZOLIDONE; GENTAMICIN; KANAMYCIN; LINCOMYCIN; METRONIDAZOLE; MINOCYCLINE; NEOMYCIN; NORFLOXACIN; OFLOXACIN; OXACILLIN; PENICILLIN G; PIPERACILLIN; POLYMYXIN B; RIFAMPICIN; STREPTOMYCIN; TETRACYCLINE; VANCOMYCIN; BACTERIAL DNA; FATTY ACID; INORGANIC SALT; QUINONE DERIVATIVE; RIBOSOME DNA; RNA 16S;

ANTIBIOTIC RESISTANCE; ANTIBIOTIC SENSITIVITY; AQUIMARINA GRACILIS; AQUIMARINA INTERMEDIA; AQUIMARINA MUELLERI; AQUIMARINA PENAEI; AQUIMARINA SPONGIAE; ARTICLE; BACTERIAL GROWTH; CHEMOTAXONOMY; CONTROLLED STUDY; DNA CONTENT; DNA DETERMINATION; GENE SEQUENCE; GRAM NEGATIVE BACTERIUM; LITOPENAEUS VANNAMEI; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENETIC TREE; PHYLOGENY; ANIMAL; BACTERIUM IDENTIFICATION; CHEMISTRY; CHINA; CLASSIFICATION; CLUSTER ANALYSIS; CYTOSOL; DNA BASE COMPOSITION; DNA SEQUENCE; FLAVOBACTERIACEAE; GASTROINTESTINAL TRACT; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; PENAEIDAE; PH; TEMPERATURE;

AQUIMARINA; LITOPENAEUS VANNAMEI;

ANIMALS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CHINA; CLUSTER ANALYSIS; CYTOSOL; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; FLAVOBACTERIACEAE; GASTROINTESTINAL TRACT; HYDROGEN-ION CONCENTRATION; MOLECULAR SEQUENCE DATA; PENAEIDAE; PHYLOGENY; QUINONES; RNA, RIBOSOMAL, 16S; SALTS; SEQUENCE ANALYSIS, DNA; TEMPERATURE;

EID: 84911967929     PISSN: 00036072     EISSN: 15729699     Source Type: Journal    
DOI: 10.1007/s10482-014-0292-3     Document Type: Article

References (30)

1. Ausubel FM, Brent R, Kingston RE, Moore DD, Seidman J, Smith JA, Struhl K (2002) Short protocols in molecular biology: a compendium of methods from current protocols in molecular biology. Wiley, Hoboken
2. Chen WM, Sheu FS, Sheu SY (2012) Aquimarina salinaria sp. nov., a novel algicidal bacterium isolated from a saltpan. Arch Microbiol 194:103–112
3. Collins MD (1985) Isoprenoid quinone analysis in bacterial classification and identification. In: Goodfellow M, Minnikin DE (eds) Chemical methods in bacterial systematics. Academic Press, London, pp 267–287
4. Dong X, Cai M (2001) Determinative manual for routine bacteriology. Scientific Press (English translation), Beijing
5. Felsenstein J (1981) Evolutionary trees from DNA sequences: a maximum likelihood approach. J Mol Evol 17:368–376
6. Kennedy J, Margassery LM, O’Leary ND, O’Gara F, Morrissey J, Dobson AD (2014) Aquimarina amphilecti sp. nov., isolated from the sponge Amphilectus fucorum. Int J Syst Evol Microbiol 64:501–505
7. Kim O-S, Cho Y-J, Lee K, Yoon S-H, Kim M, Na H, Park S-C, Jeon YS, Lee J-H, Yi H (2012) Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62:716–721
8. Lewin RA (1969) A classification of flexibacteria. J Gen Microbiol 58:189–206
9. Li GZ, Lai QL, Sun FQ, Liu XP, Xie YB, Du YP, Li GY, Shao ZZ (2013) Aquimarina atlantica sp. nov., isolated from surface seawater of the Atlantic Ocean. Antonie van Leeuwenhoek 106:293–300. doi:10.1007/s10482-014-0196-2
10. Lin B, Lu G, Zheng Y, Xie W, Li S, Hu Z (2012) Aquimarina agarilytica sp. nov., an agarolytic species isolated from a red alga. Int J Syst Evol Microbiol 62:869–873
11. Liu C, Shao Z (2005) Alcanivorax dieselolei sp. nov., a novel alkane-degrading bacterium isolated from sea water and deep-sea sediment. Int J Syst Evol Microbiol 55:1181–1186
12. Mesbah M, Premachandran U, Whitman WB (1989) Precise measurement of the G+C content of deoxyribonucleic acid by high performance liquid chromatography. Int J Syst Bacteriol 39:159–167
13. Miyazaki M, Nagano Y, Fujiwara Y, Hatada Y, Nogi Y (2010) Aquimarina macrocephali sp. nov., isolated from sediment adjacent to sperm whale carcasses. Int J Syst Evol Microbiol 60:2298–2302
14. Nedashkovskaya OI, Kim SB, Lysenko AM, Frolova GM, Mikhailov VV, Lee KH, Bae KS (2005) Description of Aquimarina muelleri gen. nov., sp. nov., and proposal of the reclassification of [Cytophaga] latercula Lewin 1969 as Stanierella latercula gen. nov., comb. nov. Int J Syst Evol Microbiol 55:225–229
15. Nedashkovskaya OI, Vancanneyt M, Christiaens L, Kalinovskaya NI, Mikhailov VV, Swings J (2006) Aquimarina intermedia sp. nov., reclassification of Stanierella latercula (Lewin 1969) as Aquimarina latercula comb. nov. and Gaetbulimicrobium brevivitae Yoon et al. 2006 as Aquimarina brevivitae comb. nov. and emended description of the genus Aquimarina. Int J Syst Evol Microbiol 56:2037–2041
16. Nedashkovskaya OI, Vancanneyt M, Kim S B (2011). Genus IV. Aquimarina. In Bergey’s Manual of Systematic Bacteriology 4:158–161
17. Oh Y-S, Kahng H-Y, Lee YS, Yoon B-J, Lim S-B, Jung JS, Oh D-C, Lee D-H (2010) Aquimarina litoralis sp. nov., isolated from a Coastal Seawater. J Microbiol 48:433–437
18. Park SC, Choe HN, Baik KS, Seong CN (2012) Aquimarina mytili sp. nov., isolated from the gut microflora of a mussel, Mytilus coruscus, and emended description of Aquimarina macrocephali. Int J Syst Evol Microbiol 62:1974–1979
19. Park SC, Choe HN, Baik KS, Seong CN (2013) Aquimarina gracilis sp. nov., isolated from the gut microflora of a mussel, Mytilus coruscus, and emended description of Aquimarina spongiae. Int J Syst Evol Microbiol 63:1782–1787
20. Rzhetsky A, Nei M (1992) Statistical properties of the ordinary least-squares, generalized least-squares, and minimum-evolution methods of phylogenetic inference. J Mol Evol 35:367–375
21. Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406–425
22. Sasser M (1990) Identification of bacteria by gas chromatography of cellular fatty acids. MIDI Technical Note 101. Microbial ID, Inc, Newark
23. Shieh WY, Chen Y-W, Chaw S-M, Chiu H-H (2003) Vibrio ruber sp. nov., a red, facultatively anaerobic, marine bacterium isolated from sea water. Int J Syst Evol Microbiol 53:479–484
24. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28:2731–2739
25. Tindall BJ (1990) Lipid composition of Halobacterium lacusprofundi. FEMS Microbiol Lett 66:199–202
26. Yi H, Chun J (2011) Aquimarina addita sp. nov., isolated from seawater. Int J Syst Evol Microbiol 61:2445–2449
27. Yoon JH, Kang SJ, Jung SY, Oh HW, Oh TK (2006) Gaetbulimicrobium brevivitae gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a tidal flat of the Yellow Sea in Korea. Int J Syst Evol Microbiol 56:115–119
28. Yoon BJ, You HS, Lee DH, Oh DC (2011) Aquimarina spongiae sp. nov., isolated from marine sponge Halichondria oshoro. Int J Syst Evol Microbiol 61:417–421
29. Yu T, Yin Q, Song X, Zhao R, Shi X, Zhang XH (2013) Aquimarina longa sp. nov., isolated from seawater, and emended description of Aquimarina muelleri. Int J Syst Evol Microbiol 63:1235–1240
30. Yu T, Zhang Z, Fan X, Shi X, Zhang X-H (2014) Aquimarina megaterium sp. nov., isolated from seawater. Int J Syst Evol Microbiol 64:122–127