Aquimarina longa sp. nov., isolated from seawater, and emended description of Aquimarina muelleri

International Journal of Systematic and Evolutionary Microbiology

Volumn 63, Issue PART4, 2013, Pages 1235-1240

  Yu, Tong ^a   Yin, Qi ^a   Song, Xiangyu ^a   Zhao, Rui ^a   Shi, Xiaochong ^a   Zhang, Xiao Hua ^a  

^a OCEAN UNIVERSITY OF CHINA   (China)

Author keywords

[No Author keywords available]

Indexed keywords

AMPICILLIN; BACTERIAL DNA; CARBENICILLIN; CEFOPERAZONE; CEFTRIAXONE; CEFUROXIME; ERYTHROMYCIN; FATTY ACID; LINCOMYCIN; MINOCYCLINE; NORFLOXACIN; PHOSPHATIDYLETHANOLAMINE; PIPERACILLIN; TETRACYCLINE; VANCOMYCIN;

AQUIMARINA ADDITA; AQUIMARINA AGARILYTICA; AQUIMARINA BREVIVITAE; AQUIMARINA INTERMEDIA; AQUIMARINA LATERCULA; AQUIMARINA LONGA; AQUIMARINA MACROCEPHALI; AQUIMARINA MUELLERI; AQUIMARINA SPONGIAE; ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATE; GRAM NEGATIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL;

BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; DNA, BACTERIAL; FATTY ACIDS; FLAVOBACTERIACEAE; MOLECULAR SEQUENCE DATA; PACIFIC OCEAN; PHOSPHATIDYLETHANOLAMINES; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; VITAMIN K 2; WATER MICROBIOLOGY;

AQUIMARINA; AQUIMARINA MUELLERI;

EID: 84876093014     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.041509-0     Document Type: Article

References (24)

1. Ausubel, F. M., Brent, R., Kingston, R. E., Moore, D. D., Seidman, J. G., Smith, J. A. & Struhl, K. (editors) (1995). Short Protocols in Molecular Biology: a Compendium of Methods from Current Protocols in Molecular Biology, 3rd edn. New York: Wiley.
2. Bernardet, J. F., Nakagawa, Y., Holmes, B. & Subcommittee on the taxonomy of Flavobacterium and Cytophaga-like bacteria of the International Committee on Systematics of Prokaryotes (2002). Proposed minimal standards for describing new taxa of the family Flavobacteriaceae and emended description of the family. Int J Syst Evol Microbiol 52, 1049-1070.
3. Beveridge, T. J., Lawrence, J. R. & Murray, R. G. E. (2007). Sampling and staining for light microscopy. In Methods for General and Molecular Microbiology, pp. 19-33. Edited by C. A. Reddy, T. J. Beveridge, J. A. Breznak, G. Marzluf, T. M. Schmidt & L. R. Snyder. Washington, DC: American Society for Microbiology.
4. Hsu, S. C. & Lockwood, J. L. (1975). Powdered chitin agar as a selective medium for enumeration of actinomycetes in water and soil. Appl Microbiol 29, 422-426.
5. Kim, O.-S., Cho, Y.-J., Lee, K., Yoon, S.-H., Kim, M., Na, H., Park, S.-C., Jeon, Y. S., Lee, J.-H. & other authors (2012). Introducing EzTaxone: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species. Int J Syst Evol Microbiol 62, 716-721.
6. Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16, 111-120.
7. Lewin, R. A. (1969). A classification of flexibacteria. J Gen Microbiol 58, 189-206.
8. Lin, B., Lu, G., Zheng, Y., Xie, W., Li, S. & Hu, Z. (2012). Aquimarina agarilytica sp. nov., a agarolytic species isolated from red alga. Int J Syst Evol Microbiol 62, 869-873.
9. Lyman, J. & Fleming, R. H. (1940). Composition of seawater. J Mar Res 3, 134-146.
10. Mesbah, M. & Whitman, W. B. (1989). Measurement of deoxyguanosine/ thymidine ratios in complex mixtures by high-performance liquid chromatography for determination of the mole percentage guanine + cytosine of DNA. J Chromatogr A 479, 297-306.
11. Minnikin, D. E., O'Donnell, A. G., Goodfellow, M., Alderson, G., Athalye, M., Schaal, A. & Parlett, J. H. (1984). An integrated procedure for the extraction of bacterial isoprenoid quinones and polar lipids. J Microbiol Methods 2, 233-241.
12. Miyazaki, M., Nagano, Y., Fujiwara, Y., Hatada, Y. & Nogi, Y. (2010). Aquimarina macrocephali sp. nov., isolated from sediment adjacent to sperm whale carcasses. Int J Syst Evol Microbiol 60, 2298-2302.
13. Nedashkovskaya, O. I., Kim, S. B., Lysenko, A. M., Frolova, G. M., Mikhailov, V. V., Lee, K. H. & Bae, K. S. (2005). Description of Aquimarina muelleri gen. nov., sp. nov., and proposal of the reclassification of [Cytophaga] latercula Lewin 1969 as Stanierella latercula gen. nov., comb. nov. Int J Syst Evol Microbiol 55, 225-229.
14. Nedashkovskaya, O. I., Vancanneyt, M., Christiaens, L., Kalinovskaya, N. I., Mikhailov, V. V. & Swings, J. (2006). Aquimarina intermedia sp. nov., reclassification of Stanierella latercula (Lewin 1969) as Aquimarina latercula comb. nov. and Gaetbulimicrobium brevivitae Yoon et al. 2006 as Aquimarina brevivitae comb. nov. and emended description of the genus Aquimarina. Int J Syst Evol Microbiol 56, 2037-2041.
15. Park, S. C., Choe, H. N., Baik, K. S. & Seong, C. N. (2012). Aquimarina mytili sp. nov., isolated from the gut microflora of a mussel, Mytilus coruscus and emended description of Aquimarina macrocephali. Int J Syst Evol Microbiol 62, 1974-1979.
16. Sasser, M. (1990). Identification of bacteria by gas chromatography of cellular fatty acids, MIDI Technical Note 101. Newark, DE: MIDI Inc.
17. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
18. Stackebrandt, E. & Goebel, B. M. (1994). Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44, 846-849.
19. Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
20. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
21. Tindall, B. J., Sikorski, J., Smibert, R. M. & Krieg, N. R. (2007). Phenotypic characterization and the principles of comparative systematics. In Methods for General and Molecular Microbiology, pp. 330-393. Edited by C. A. Reddy, T. J. Beveridge, J. A. Breznak, G. Marzluf, T. M. Schmidt & L. R. Snyder. Washington, DC: American Society for Microbiology.
22. Yi, H. & Chun, J. (2011). Aquimarina addita sp. nov., isolated from seawater. Int J Syst Evol Microbiol 61, 2445-2449.
23. Yoon, J. H., Kang, S. J., Jung, S. Y., Oh, H. W. & Oh, T. K. (2006). Gaetbulimicrobium brevivitae gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from a tidal flat of the Yellow Sea in Korea. Int J Syst Evol Microbiol 56, 115-119.
24. Yoon, B. J., You, H. S., Lee, D. H. & Oh, D. C. (2011). Aquimarina spongiae sp. nov., isolated from marine sponge Halichondria oshoro. Int J Syst Evol Microbiol 61, 417-421.