In-depth proteomic analysis of rice embryo reveals its important roles in seed germination

Plant and Cell Physiology

Volumn 55, Issue 10, 2014, Pages 1826-1847

  Han, Chao ^a,b   He, Dongli ^a   Li, Ming ^a,b   Yang, Pingfang ^a  

^a Wuhan Institute of Botany Chinese Academy of Sciences   (China)

^b UNIVERSITY OF CHINESE ACADEMY OF SCIENCES   (China)

Author keywords

Embryo; Endosperm; Proteomics; Rice; Seed germination

Indexed keywords

PROTEOME; VEGETABLE PROTEIN;

EMBRYOLOGY; GENETICS; GERMINATION; METABOLISM; PHYSIOLOGY; PLANT SEED; RICE;

GERMINATION; ORYZA SATIVA; PLANT PROTEINS; PROTEOME; SEEDS;

EID: 84911926341     PISSN: 00320781     EISSN: 14719053     Source Type: Journal    
DOI: 10.1093/pcp/pcu114     Document Type: Article

References (51)

1. Abdallah, C., Dumas-Gaudot, E., Renaut, J. and Sergeant, K. (2012) Gelbased and gel-free quantitative proteomics approaches at a glance. Int. J. Plant Genomics. 2012: 494572.
2. Aoki, N., Scofield, G.N., Wang, X.D., Offler, C.E., Patrick, J.W. and Furbank, R.T. (2006) Pathway of sugar transport in germinating wheat seeds. Plant Physiol. 141: 1255-1263.
3. Assmann, S.M. (2005) G protein signaling in the regulation of rice seed germination. Science STKE 310: cm12.
4. Bewley, J.D. (1997) Seed germination and dormancy. Plant Cell 9: 1055-1066.
5. Bush, D.S., Cornejo, M.J., Huang, C.N. and Jones, R.L. (1986) Ca-stimulated secretion of alpha-amylase during development in barley aleurone protoplasts. Plant Physiol. 82: 566-574.
6. Chen, M., Mooney, B.P., Hajduch, M., Joshi, T., Zhou, M., Xu, D. and Thelen, J.J. (2009) System analysis of an Arabidopsis mutant altered in de novo fatty acid synthesis reveals diverse changes in seed composition and metabolism. Plant Physiol. 150: 27-41.
7. Chevalier, D., Morris, E.R. and Walker, J.C. (2009) 14-3-3 and FHA domains mediate phosphoprotein interactions. Annu. Rev. Plant Biol. 60: 67-91.
8. Chiu, R.S., Nahal, H., Provart, N.J. and Gazzarrini, S. (2012) The role of the Arabidopsis FUSCA3 transcription factor during inhibition of seed germination at high temperature. BMC Plant Biol. 12: 15.
9. Cho, J.N., Ryu, J.Y., Jeong, Y.M., Park, J., Song, J.J., Amasino, R.M., Noh, B. et al. (2012) Control of seed germination by light-induced histone arginine demethylation activity. Dev. Cell. 22: 736-748.
10. Commuri, P.D. and Keeling, P.L. (2001) Chain-length specificities of maize starch synthase I enzyme: studies of glucan affinity and catalytic properties. Plant J. 25: 475-486.
11. Dave, A., Hernandez, M.L., He, Z., Andriotis, V.M., Vaistij, F.E., Larson, T.R. and Graham, I.A. (2011) 12-oxo-phytodienoic acid accumulation during seed development represses seed germination in Arabidopsis. Plant Cell. 23: 583-599.
12. Fincher, G.B. (1989) Molecular and cellular biology associated with endosperm mobilization in germinating cereal-grains. Annu. Rev. Plant Physiol. Plant Mol. Biol. 40: 305-346.
13. Finkelstein, R., Reeves, W., Ariizumi, T. and Steber, C. (2008) Molecular aspects of seed dormancy. Annu. Rev. Plant Biol. 59: 387-415.
14. Gillaspy, G.E. (2011) The cellular language of myo-inositol signaling. New Phytol. 192: 823-839.
15. Gomez-Cadenas, A., Zentella, R., Walker-Simmons, M.K. and Ho, T.H. (2001) Gibberellin/abscisic acid antagonism in barley aleurone cells: site of action of the protein kinase PKABA1 in relation to gibberellin signaling molecules. Plant Cell. 13: 667-679.
16. Gubler, F., Kalla, R., Roberts, J.K. and Jacobsen, J.V. (1995) Gibberellinregulated expression of a myb gene in barley aleurone cells: evidence for Myb transactivation of a high-pI alpha-amylase gene promoter. Plant Cell. 7: 1879-1891.
17. Guo, J.J., Wang, J.B., Xi, L., Huang, W.D., Liang, J.S. and Chen, J.G. (2009) RACK1 is a negative regulator of ABA responses in Arabidopsis. J. Exp. Bot. 60: 3819-3833.
18. Han, C., Yin, X., He, D. and Yang, P. (2013) Analysis of proteome profile in germinating soybean seed, and its comparison with rice showing the styles of reserves mobilization in different crops. Plos One 8: e56947.
19. He, D., Han, C., Yao, J., Shen, S. and Yang, P. (2011) Constructing the metabolic and regulatory pathways in germinating rice seeds through proteomic approach. Proteomics 11: 2693-2713.
20. Hirano, H.Y. and Sano, Y. (1998) Enhancement of Wx gene expression and the accumulation of amylose in response to cool temperatures during seed development in rice. Plant Cell Physiol. 39: 807-812.
21. Holdsworth, M.J., Bentsink, L. and Soppe, W.J. (2008) Molecular networks regulating Arabidopsis seed maturation, after-ripening, dormancy and germination. New Phytol. 179: 33-54.
22. Hong, Y.-F., Ho, T.-H., Wu, C.-F., Ho, S.-L., Yeh, R.-H., Lu, C.-A. et al. (2012) Convergent starvation signals and hormone crosstalk in regulating nutrient mobilization upon germination in cereals. Plant Cell. 24: 2857-2873.
23. Kanai, M., Nishimura, M. and Hayashi, M. (2010) A peroxisomal ABC transporter promotes seed germination by inducing pectin degradation under the control of ABI5. Plant J. 62: 936-947.
24. Katagiri, T., Ishiyama, K., Kato, T., Tabata, S., Kobayashi, M. and Shinozaki, K. (2005) An important role of phosphatidic acid in ABA signaling during germination in Arabidopsis thaliana. Plant J. 43: 107-117.
25. Kim, S.T., Kang, S.Y., Wang, Y., Kim, S.G., Hwang du, H. and Kang, K.Y. (2008) Analysis of embryonic proteome modulation by GA and ABA from germinating rice seeds. Proteomics. 8: 3577-3587.
26. Kim, S.T., Wang, Y., Kang, S.Y., Kim, S.G., Rakwal, R., Kim, Y.C. et al. (2009) Developing rice embryo proteomics reveals essential role for embryonic proteins in regulation of seed germination. J. Proteome Res. 8: 3598-3605.
27. Kim, W., Lee, Y., Park, J., Lee, N. and Choi, G. (2013) HONSU, a protein phosphatase 2C, regulates seed dormancy by inhibiting ABA signaling in Arabidopsis. Plant Cell Physiol. 54: 555-572.
28. Kruger, N.J. (1994) The Bradford method for protein quantitation. Basic Methods in Mol. Biol. 32: 9-15.
29. Kumagai, M.H., Shah, M., Terashima, M., Vrkljan, Z., Whitaker, J.R. and Rodriguez, R.L. (1990) Expression and secretion of rice alpha-amylase by Saccharomyces cerevisiae. Gene 94: 209-216.
30. Leonova, S., Grimberg, A., Marttila, S., Stymne, S. and Carlsson, A.S. (2010) Mobilization of lipid reserves during germination of oat (Avena sativa L.), a cereal rich in endosperm oil. J. Exp. Bot. 61: 3089-3099.
31. Liu, Y., Ye, N., Liu, R., Chen, M. and Zhang, J. (2010) H2O2 mediates the regulation of ABA catabolism and GA biosynthesis in Arabidopsis seed dormancy and germination. J. Exp. Bot. 61: 2979-2990.
32. Lovegrove, A. and Hooley, R. (2000) Gibberellin and abscisic acid signalling in aleurone. Trends in Plant Science 5: 102-110.
33. Maddelein, M.L., Libessart, N., Bellanger, F., Delrue, B., D'Hulst, C., Van den Koornhuyse, N. et al. (1994) Toward an understanding of the biogenesis of the starch granule - determination of granule-bound and soluble starch synthase functions in amylopectin synthesis. J. Biol. Chem. 269: 25150-25157.
34. Matsukura, C., Saitoh, T., Hirose, T., Ohsugi, R., Perata, P. and Yamguchi, J. (2000) Sugar uptake and transport in rice embryo. Expression of companion cell-specific sucrose transporter (OsSUT1) induced by sugar and light. Plant Physiol. 124: 85-93.
35. Moller, S.G., Kunkel, T. and Chua, N.H. (2001) A plastidic ABC protein involved in intercompartmental communication of light signaling. Genes Dev. 15: 90-103.
36. Motes, C.M., Pechter, P., Yoo, C.M., Wang, Y.S., Chapman, K.D. and Blancaflor, E.B. (2005) Differential effects of two phospholipase D inhibitors, 1-butanol and N-acylethanolamine, on in vivo cytoskeletal organization and Arabidopsis seedling growth. Protoplasma. 226: 109-123.
37. Muntz, K., Belozersky, M.A., Dunaevsky, Y.E., Schlereth, A. and Tiedemann, J. (2001) Stored proteinases and the initiation of storage protein mobilization in seeds during germination and seedling growth. J. Exp. Bot. 52: 1741-1752.
38. Nagasawa, N., Hibara, K., Heppard, E.P., Vander Velden, K.A., Luck, S., Beatty, M. et al. (2013) GIANT EMBRYO encodes CYP78A13, required for proper size balance between embryo and endosperm in rice. Plant J. 75: 592-605.
39. Nakabayashi, K., Okamoto, M., Koshiba, T., Kamiya, Y. and Nambara, E. (2005) Genome-wide profiling of stored mRNA in Arabidopsis thaliana seed germination: epigenetic and genetic regulation of transcription in seed. Plant J. 41: 697-709.
40. Nakashima, A., Chen, L., Thao, N.P., Fujiwara, M., Wong, H.L., Kuwano, M. et al. (2008) RACK1 functions in rice innate immunity by interacting with the Rac1 immune complex. Plant Cell. 20: 2265-2279.
41. Neff, M.M. (2012) Light-mediated seed germination: connecting phytochrome B to gibberellic acid. Dev. Cell. 22: 687-688.
42. Ogawa, M., Hanada, A., Yamauchi, Y., Kuwahara, A., Kamiya, Y. and Yamaguchi, S. (2003) Gibberellin biosynthesis and response during Arabidopsis seed germination. Plant Cell. 15: 1591-1604.
43. Rahman, S., Regina, A., Li, Z., Mukai, Y., Yamamoto, M., Kosar-Hashemi, B. et al. (2001) Comparison of starch-branching enzyme genes reveals evolutionary relationships among isoforms. Characterization of a gene for starch-branching enzyme IIa from the wheat genome donor Aegilops tauschii. Plant Physiol. 125: 1314-1324.
44. Schoonheim, P.J., Pereira, D.D.C. and De Boer, A.H. (2009) Dual role for 14- 3-3 proteins and ABF transcription factors in gibberellic acid and abscisic acid signalling in barley (Hordeum vulgare) aleurone cells. Plant Cell Environ. 32: 439-447.
45. Scofield, G.N., Aoki, N., Hirose, T., Takano, M., Jenkins, C.L. and Furbank, R.T. (2007) The role of the sucrose transporter, OsSUT1, in germination and early seedling growth and development of rice plants. J. Exp. Bot. 58: 483-495.
46. Tan, L., Chen, S., Wang, T. and Dai, S. (2013) Proteomic insights into seed germination in response to environmental factors. Proteomics 13: 1850-1870.
47. Tan-Wilson, A.L. and Wilson, K.A. (2012) Mobilization of seed protein reserves. Physiol. Plantar. 145: 140-153.
48. Wang, X.P., Li, W.J., Piqueras, R., Cao, K.M., Deng, X.W. and Wei, N. (2009) Regulation of COP1 nuclear localization by the COP9 signalosome via direct interaction with CSN1. Plant J. 58: 655-667.
49. Yang, P., Li, X., Wang, X., Chen, H., Chen, F. and Shen, S. (2007) Proteomic analysis of rice (Oryza sativa) seeds during germination. Proteomics 7: 3358-3368.
50. Zhang, Y., Zhu, H., Zhang, Q., Li, M., Yan, M., Wang, R. et al. (2009) Phospholipase dalpha1 and phosphatidic acid regulate NADPH oxidase activity and production of reactive oxygen species in ABA-mediated stomatal closure in Arabidopsis. Plant Cell. 21: 2357-2377.
51. Zhou, S.R., Yin, L.L. and Xue, H.W. (2013) Functional genomics based understanding of rice endosperm development. Curr. Opin. Plant Biol. 16: 236-246.