A peroxisomal ABC transporter promotes seed germination by inducing pectin degradation under the control of ABI5

Plant Journal

Volumn 62, Issue 6, 2010, Pages 936-947

  Kanai, Masatake ^b   Nishimura, Mikio ^b   Hayashi, Makoto ^a  

^a NATIONAL INSTITUTE FOR BASIC BIOLOGY   (Japan)

^b GRADUATE UNIVERSITY FOR ADVANCED STUDIES   (Japan)

Author keywords

ABC transporter; ABI5; Fatty acid oxidation; Germination; Peroxisome; Polygalacturonase inhibiting protein

Indexed keywords

ABC TRANSPORTER; ABI5; ACIDIC CONDITIONS; ARABIDOPSIS THALIANA; ATP-BINDING CASSETTE TRANSPORTERS; DOUBLE MUTANTS; EXPRESSION PATTERNS; JASMONIC ACIDS; LONG-CHAIN FATTY ACIDS; POLYGALACTURONASE; POLYGALACTURONASE INHIBITING PROTEINS; POLYGALACTURONASE-INHIBITING PROTEIN; PROMOTER REGION; RADICLE PROTRUSION; SEED COATS; SEED DORMANCY; SEED GERMINATION; SINGLE-COPY GENES; TRANSCRIPTOME ANALYSIS;

ACIDS; CYTOLOGY; FATTY ACIDS; GENE ENCODING; OXIDATION; PLANTS (BOTANY); TIME MEASUREMENT; TRANSCRIPTION; TRANSCRIPTION FACTORS;

SEED;

ABC TRANSPORTER; ABI5 PROTEIN, ARABIDOPSIS; ARABIDOPSIS PROTEIN; BASIC LEUCINE ZIPPER TRANSCRIPTION FACTOR; PECTIN; PED3 PROTEIN, ARABIDOPSIS; PGIP1 PROTEIN, ARABIDOPSIS; PGIP2 PROTEIN, ARABIDOPSIS; PLANT RNA; POLYGALACTURONASE;

ARABIDOPSIS; ARTICLE; DNA MICROARRAY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETICS; GERMINATION; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MOLECULAR CLONING; MUTATION; PLANT SEED;

ARABIDOPSIS; ARABIDOPSIS PROTEINS; ATP-BINDING CASSETTE TRANSPORTERS; BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTORS; CLONING, MOLECULAR; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GERMINATION; MUTATION; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PECTINS; POLYGALACTURONASE; RNA, PLANT; SEEDS;

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 77953529898     PISSN: 09607412     EISSN: 1365313X     Source Type: Journal    
DOI: 10.1111/j.1365-313X.2010.04205.x     Document Type: Article

References (35)

1. Baker, A., Graham, I.A., Holdsworth, M., Smith, S.M. Theodolou, F.L. (2006) Chewing the fat: β-oxidation in signalling and development. Trends Plant Sci. 11, 124 132.
2. Bassel, G.W., Fung, P., Chow, T.F., Foong, J.A., Provart, N.J. Cutler, S.R. (2008) Elucidating the germination transcriptional program using small molecules. Plant Physiol. 147, 143 155.
3. Beevers, H. (1982) Glyoxysomes in higher plants. Ann. NY Acad. Sci. 386, 243 251.
4. Bensmihen, S., Rippa, S., Lambert, G., Jublot, D., Pautot, V., Granier, F., Giraudat, J. Parcy, F. (2002) The homologous ABI5 and EEL transcription factors function antagonistically to fine-tune gene expression during late embryogenesis. Plant Cell, 14, 1391 1403.
5. Boudart, G., Jamet, E., Rossignol, M., Lafitte, C., Borderies, G., Jauneau, A., Esquerre-Tugaye, M.T. Pont-Lezica, R. (2005) Cell wall proteins in apoplastic fluids of Arabidopsis thaliana rosettes: identification by mass spectrometry and bioinformatics. Proteomics, 5, 212 221.
6. Carles, C., Bies-Etheve, N., Aspart, L., Leon-Kloosterziel, K.M., Koornneef, M., Echeverria, M. Delseny, M. (2002) Regulation of Arabidopsis thaliana Em genes: role of ABI5. Plant J. 30, 373 383.
7. Carrera, E., Holman, T., Medhurst, A., Peer, W., Schmuths, H., Footitt, S., Theodoulou, F.L. Holdsworth, M.J. (2007) Gene expression profiling reveals defined functions of the ATP-binding cassette transporter COMATOSE late in phase II of germination. Plant Physiol. 143, 1669 1679.
8. Dietrich, D., Schmuths, H., De Marcos Lousa, C., Baldwin, J.M., Baldwin, S.A., Baker, A., Theodoulou, F.L. Holdsworth, M.J. (2009) Mutations in the Arabidopsis peroxisomal ABC transporter COMATOSE allow differentiation between multiple functions in planta: insights from an allelic series. Mol. Biol. Cell, 20, 530 543.
9. Ferrari, S., Vairo, D., Ausubel, F.M., Cervone, F. De Lorenzo, G. (2002) Tandemly duplicated Arabidopsis genes that encode polygalacturonase-inhibiting proteins are regulated coordinately by different signal transduction pathways in response to fungal infection. Plant Cell, 15, 93 106.
10. Ferrari, S., Galletti, R., Vairo, D., Cervone, F. De Lorenzo, G. (2006) Antisense expression of the Arabidopsis thaliana AtPGIP1 gene reduces polygalacturonase-inhibiting protein accumulation and enhances susceptibility to Botrytis cinerea. Mol. Plant Microbe Interact. 19, 931 936.
11. Finkelstein, R. Lynch, T. (2000) The Arabidopsis abscisic acid response gene ABI5 encodes a basic leucine zipper transcription factor. Plant Cell, 12, 599 609.
12. Finkelstein, R., Reeves, W., Ariizumi, T. Steber, C. (2008) Molecular aspects of seed dormancy. Annu. Rev. Plant Biol. 59, 387 415.
13. Footitt, S., Slocombe, S.P., Larner, V., Kurup, S., Wu, Y.S., Larson, T., Graham, I., Baker, A. Holdsworth, M.J. (2002) Control of germination and lipid mobilization by COMATOSE, the Arabidopsis homologue of human ALDP. EMBO J. 21, 2912 2922.
14. Footitt, S., Marquez, J., Schmuths, H., Baker, A., Theodoulou, F.L. Holdsworth, M. (2006) Analysis of the role of COMATOSE and peroxisomal β-oxidation in the determination of germination potential in Arabidopsis. J. Exp. Bot. 57, 2805 2814.
15. Hayashi, M., Toriyama, K., Kondo, M. Nishimura, M. (1998) 2,4-Dichlorophenoxybutyric acid-resistant mutants of Arabidopsis have defects in glyoxisomal fatty acid β-oxidation. Plant Cell, 10, 183 195.
16. Hayashi, M., Nito, K., Toriyama-Kato, K., Kondo, M., Yamaya, T. Nishimura, M. (2000) AtPex14p maintains peroxisomal functions by determining protein targeting to three kinds of plant peroxisomes. EMBO J. 19, 5701 5710.
17. Hayashi, M., Nito, K., Takei-Hoshi, R., Yagi, M., Kondo, M., Suenaga, A., Yamaya, T. Nishimura, M. (2002) Ped3p is a peroxisomal ATP-binding cassette transporter that might supply substrate for fatty acid β-oxidation. Plant Cell Physiol. 43, 1 11.
18. Higo, K., Ugawa, Y., Iwamoto, M. Korenaga, T. (1999) Plant cis-acting regulatory DNA elements (PLACE) database: 1999. Nucleic Acids Res. 27, 297 300.
19. Holdsworth, M.J., Finch-Savage, W.E., Grappin, P. Job, D. (2008) Post-genomics dissection of seed dormancy and germination. Trends Plant Sci. 13, 7 13.
20. Irshad, M., Canut, H., Borderies, G., Pont-Lezica, R. Jamet, E. (2008) A new picture of cell wall protein dynamics in elongating cells of Arabidopsis thaliana: confirmed actors and newcomers. BMC Plant Biol. 8, 94.
21. Kamada, T., Nito, K., Hayashi, H., Mano, S., Hayashi, M. Nishimura, M. (2003) Functional differentiation of peroxisomes revealed by expression profiles of peroxisomal genes in Arabidopsis thaliana. Plant Cell Physiol. 44, 1275 1289.
22. Koornneef, M., Bentsink, L. Hilhorst, H. (2002) Seed dormancy and germination. Curr. Opin. Plant Biol. 5, 33 36.
23. Mitchum, M.G., Yamaguchi, S., Hanada, A., Kuwahara, A., Yoshioka, Y., Kato, T., Tabata, S., Kamiya, Y. Sun, T.P. (2006) Distinct and overlapping roles of two gibberellin 3-oxidases in Arabidopsis development. Plant J. 45, 804 818.
24. Nakabayashi, K., Okamoto, M., Koshiba, T., Kamiya, Y. Nambara, E. (2005) Genome-wide profiling of stored mRNA in Arabidopsis thaliana seed germination: epigenetic and genetic regulation of transcription in seed. Plant J. 41, 697 709.
25. Nishimura, M., Yamaguchi, J., Mori, H., Akazawa, T. Yokota, S. (1986) Immunocytochemical analysis shows that glyoxysomes are directly transformed to leaf peroxisomes during greening of pumpkin cotyledons. Plant Physiol. 80, 313 316.
26. Nishimura, M., Takeuchi, Y., De Bellis, L. Hara-Nishimura, I. (1993) Leaf peroxisomes are directly transformed to glyoxysomes during senescence of pumpkin cotyledons. Protoplasma, 175, 131 137.
27. Nishimura, M., Hayashi, M., Kato, A., Yamaguchi, K. Mano, S. (1996) Functional transformation of microbodies in higher plant cells. Cell Struct. Funct. 21, 387 393.
28. Pinfield-Wells, H., Rylott, E.L., Gilday, A.D., Graham, S., Job, K., Larson, T.R. Graham, I.A. (2005) Sucrose rescues seedling establishment but not germination of Arabidopsis mutants disrupted in peroxisomal fatty acid catabolism. Plant J. 43, 861 872.
29. Piskurewicz, U., Jikumaru, Y., Kinoshita, N., Nambara, E., Kamiya, Y. Lopez-Molina, L. (2008) The gibberellic acid signaling repressor RGL2 inhibits Arabidopsis seed germination by stimulating abscisic acid synthesis and ABI5 activity. Plant Cell, 20, 2729 2745.
30. Russell, L., Larner, V., Kurup, S., Bougourd, S. Holdsworth, M.J. (2000) The Arabidopsis COMATOSE locus regulates germination potential. Development, 127, 3759 3767.
31. Schwechheimer, C. (2008) Understanding gibberellic acid signaling - are we there yet? Curr. Opin. Plant Biol. 11, 9 15.
32. Theodoulou, F.L., Job, K., Slocombe, S.P., Footitt, S., Holdsworth, M.J., Baker, A., Larson, T.R. Graham, I.A. (2005) Jasmonic acid levels are reduced in COMATOSE ATP-binding cassette transporter mutants: implications for transport of jasmonate precursors into peroxisomes. Plant Physiol. 137, 835 840.
33. Willats, W.G.T., McCartney, L., Mackie, W. Knox, J.P. (2001) Pectin: cell biology and prospects for functional analysis. Plant Mol. Biol. 47, 9 27.
34. Yamaguchi-Shinozaki, K. Shinozaki, K. (2005) Organization of cis-acting regulatory elements in osmotic- and cold-stress-responsive promoters. Trends Plant Sci. 10, 88 94.
35. Zolman, B.K., Silva, I.D. Bartel, B. (2001) The Arabidopsis pxa1 mutant is defective in an ATP-binding cassette transporter-like protein required for peroxisomal fatty acid β-oxidation. Plant Physiol. 127, 1266 1278.