-
1
-
-
80052221189
-
Evaluation of high-throughput sequencing for identifying known and unknown viruses in biological samples
-
Cheval J, Sauvage V, Frangeul L et al (2011) Evaluation of high-throughput sequencing for identifying known and unknown viruses in biological samples. J Clin Microbiol 49:3268-3275
-
(2011)
J Clin Microbiol
, vol.49
, pp. 3268-3275
-
-
Cheval, J.1
Sauvage, V.2
Frangeul, L.3
-
3
-
-
79961183224
-
Metagenomic analysis of bacterial infections by means of high-throughput DNA sequencing
-
Nakamura S, Nakaya T, Iida T (2011) Metagenomic analysis of bacterial infections by means of high-throughput DNA sequencing. Exp Biol Med (Maywood) 236:968-971
-
(2011)
Exp Biol Med (Maywood)
, vol.236
, pp. 968-971
-
-
Nakamura, S.1
Nakaya, T.2
Iida, T.3
-
4
-
-
77951134860
-
Metagenomics for the discovery of novel human viruses
-
Tang P, Chiu C (2010) Metagenomics for the discovery of novel human viruses. Future Microbiol 5:177-189
-
(2010)
Future Microbiol
, vol.5
, pp. 177-189
-
-
Tang, P.1
Chiu, C.2
-
5
-
-
83755186199
-
A viral discovery methodology for clinical biopsy samples utilising massively parallel next generation sequencing
-
Daly GM, Bexfield N, Heaney J et al (2011) A viral discovery methodology for clinical biopsy samples utilising massively parallel next generation sequencing. PLoS One 6:e28879
-
(2011)
PLoS One
, vol.6
-
-
Daly, G.M.1
Bexfield, N.2
Heaney, J.3
-
6
-
-
33947607974
-
Viral metagenomics
-
Delwart EL (2007) Viral metagenomics. Rev Med Virol 17:115-131
-
(2007)
Rev Med Virol
, vol.17
, pp. 115-131
-
-
Delwart, E.L.1
-
7
-
-
24644516529
-
Cloning of a human parvovirus by molecular screening of respiratory tract samples
-
Allander T, Tammi MT, Eriksson M et al (2005) Cloning of a human parvovirus by molecular screening of respiratory tract samples. Proc Natl Acad Sci U S A 102:12891-12896
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 12891-12896
-
-
Allander, T.1
Tammi, M.T.2
Eriksson, M.3
-
8
-
-
0035949592
-
A virus discovery method incorporating DNase treatment and its application to the identification of two bovine parvovirus species
-
Allander T, Emerson SU, Engle RE, Purcell RH, Bukh J (2001) A virus discovery method incorporating DNase treatment and its application to the identification of two bovine parvovirus species. Proc Natl Acad Sci U S A 98:11609-11614
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 11609-11614
-
-
Allander, T.1
Emerson, S.U.2
Engle, R.E.3
Purcell, R.H.4
Bukh, J.5
-
9
-
-
53049102626
-
Rapid identification of known and new RNA viruses from animal tissues
-
Victoria JG, Kapoor A, Dupuis K, Schnurr DP, Delwart EL (2008) Rapid identification of known and new RNA viruses from animal tissues. PLoS Pathog 4:e1000163
-
(2008)
PLoS Pathog
, vol.4
-
-
Victoria, J.G.1
Kapoor, A.2
Dupuis, K.3
Schnurr, D.P.4
Delwart, E.L.5
-
10
-
-
39849084772
-
Viral genome sequencing by random priming methods
-
Djikeng A, Halpin R, Kuzmickas R et al (2008) Viral genome sequencing by random priming methods. BMC Genomics 9:5
-
(2008)
BMC Genomics
, vol.9
, pp. 5
-
-
Djikeng, A.1
Halpin, R.2
Kuzmickas, R.3
-
11
-
-
0026290379
-
Sequenceindependent, single-primer amplification (SISPA) of complex DNA populations
-
Reyes GR, Kim JP (1991) Sequenceindependent, single-primer amplification (SISPA) of complex DNA populations. Mol Cell Probes 5:473-481
-
(1991)
Mol Cell Probes
, vol.5
, pp. 473-481
-
-
Reyes, G.R.1
Kim, J.P.2
-
12
-
-
84864587801
-
DNase SISPA-next generation sequencing confirms Schmallenberg virus in Belgian field samples and identifies genetic variation in Europe
-
Rosseel T, Scheuch M, Höper D (2012) DNase SISPA-next generation sequencing confirms Schmallenberg virus in Belgian field samples and identifies genetic variation in Europe. PLoS One 7:e41967
-
(2012)
PLoS One
, vol.7
-
-
Rosseel, T.1
Scheuch, M.2
Höper, D.3
-
13
-
-
33751098497
-
Virus discovery by sequence-independent genome amplifi- cation
-
Ambrose HE, Clewley JP (2006) Virus discovery by sequence-independent genome amplifi- cation. Rev Med Virol 16:365-383
-
(2006)
Rev Med Virol
, vol.16
, pp. 365-383
-
-
Ambrose, H.E.1
Clewley, J.P.2
-
14
-
-
84883207705
-
The effect of preprocessing by sequenceindependent, single-primer amplification (SISPA) on metagenomic detection of viruses
-
Karlsson OE, Belák S, Granberg F (2013) The effect of preprocessing by sequenceindependent, single-primer amplification (SISPA) on metagenomic detection of viruses. Biosecur Bioterror 11(S1):S227-S234
-
(2013)
Biosecur Bioterror
, vol.11
, Issue.S1
, pp. S227-S234
-
-
Karlsson, O.E.1
Belák, S.2
Granberg, F.3
-
15
-
-
84884625714
-
The origin of biased sequence depth in sequence-independent nucleic acid amplification and optimization for efficient massive parallel sequencing
-
Rosseel T, Van Borm S, Vandenbussche F et al (2013) The origin of biased sequence depth in sequence-independent nucleic acid amplification and optimization for efficient massive parallel sequencing. PLoS One 8:e76144
-
(2013)
PLoS One
, vol.8
-
-
Rosseel, T.1
Van Borm, S.2
Vandenbussche, F.3
-
16
-
-
77952577869
-
Recent advances in DNA sequencing methods-general principles of sample preparation
-
Linnarsson S (2010) Recent advances in DNA sequencing methods-general principles of sample preparation. Exp Cell Res 316:1339-1343
-
(2010)
Exp Cell Res
, vol.316
, pp. 1339-1343
-
-
Linnarsson, S.1
-
17
-
-
40449115382
-
A new arenavirus in a cluster of fatal transplantassociated diseases
-
Palacios G, Druce J, Du L et al (2008) A new arenavirus in a cluster of fatal transplantassociated diseases. N Engl J Med 358:991-998
-
(2008)
N Engl J Med
, vol.358
, pp. 991-998
-
-
Palacios, G.1
Druce, J.2
Du, L.3
-
18
-
-
67249156188
-
Genetic detection and characterization of Lujo virus, a new hemorrhagic feverassociated arenavirus from southern Africa
-
Briese T, Paweska JT, McMullan LK et al (2009) Genetic detection and characterization of Lujo virus, a new hemorrhagic feverassociated arenavirus from southern Africa. PLoS Pathog 5:e1000455
-
(2009)
PLoS Pathog
, vol.5
-
-
Briese, T.1
Paweska, J.T.2
McMullan, L.K.3
-
19
-
-
35348853758
-
A metagenomic survey of microbes in honey bee colony collapse disorder
-
Cox-Foster DL, Conlan S, Holmes EC et al (2007) A metagenomic survey of microbes in honey bee colony collapse disorder. Science 318:283-287
-
(2007)
Science
, vol.318
, pp. 283-287
-
-
Cox-Foster, D.L.1
Conlan, S.2
Holmes, E.C.3
-
20
-
-
84860756398
-
Performance comparison of benchtop highthroughput sequencing platforms
-
Loman NJ, Misra RV, Dallman TJ et al (2012) Performance comparison of benchtop highthroughput sequencing platforms. Nat Biotechnol 30:434-439
-
(2012)
Nat Biotechnol
, vol.30
, pp. 434-439
-
-
Loman, N.J.1
Misra, R.V.2
Dallman, T.J.3
-
21
-
-
79952422304
-
Quality control and preprocessing of metagenomic datasets
-
Schmieder R, Edwards R (2011) Quality control and preprocessing of metagenomic datasets. Bioinformatics 27:863-864
-
(2011)
Bioinformatics
, vol.27
, pp. 863-864
-
-
Schmieder, R.1
Edwards, R.2
-
22
-
-
84875398448
-
Statistical guidelines for Apis mellifera research
-
Pirk CWW, Miranda JR, Kramer M, et al. (2013) Statistical guidelines for Apis mellifera research. J Apic Res 52 (doi: 10.3896/ IBRA.1.52.4.13)
-
(2013)
J Apic Res
, vol.52
-
-
Pirk, C.W.W.1
Miranda, J.R.2
Kramer, M.3
-
23
-
-
84874547000
-
Metagenomic detection of viral pathogens in Spanish honeybees: Co- infection by Aphid lethal paralysis, Israel acute paralysis and Lake Sinai viruses
-
Granberg F, Vicente-Rubiano M, Rubio- Guerri C et al (2013) Metagenomic detection of viral pathogens in Spanish honeybees: co- infection by Aphid lethal paralysis, Israel acute paralysis and Lake Sinai viruses. PLoS One 8:e57459
-
(2013)
PLoS One
, vol.8
-
-
Granberg, F.1
Vicente-Rubiano, M.2
Rubio- Guerri, C.3
-
24
-
-
84898431119
-
High-throughput sequencing in veterinary infection biology and diagnostics
-
Belák S, Karlsson OE, Leijon M, Granberg F (2013) High-throughput sequencing in veterinary infection biology and diagnostics. Rev Sci Tech 32:893-915
-
(2013)
Rev Sci Tech
, vol.32
, pp. 893-915
-
-
Belák, S.1
Karlsson, O.E.2
Leijon, M.3
Granberg, F.4
-
25
-
-
80051688000
-
Field guide to nextgeneration DNA sequencers
-
Glenn TC (2011) Field guide to nextgeneration DNA sequencers. Mol Ecol Resour 11:759-769
-
(2011)
Mol Ecol Resour
, vol.11
, pp. 759-769
-
-
Glenn, T.C.1
-
26
-
-
80052549504
-
Integrative analysis of environmental sequences using MEGAN4
-
Huson DH, Mitra S, Ruscheweyh HJ, Weber N, Schuster SC (2011) Integrative analysis of environmental sequences using MEGAN4. Genome Res 21:1552-1560
-
(2011)
Genome Res
, vol.21
, pp. 1552-1560
-
-
Huson, D.H.1
Mitra, S.2
Ruscheweyh, H.J.3
Weber, N.4
Schuster, S.C.5
-
27
-
-
0033990048
-
Primer3 on the WWW for general users and for biologist programmers
-
Rozen S, Skaletsky H (2000) Primer3 on the WWW for general users and for biologist programmers. Methods Mol Biol 132:365-386
-
(2000)
Methods Mol Biol
, vol.132
, pp. 365-386
-
-
Rozen, S.1
Skaletsky, H.2
-
29
-
-
65649092976
-
Biopython: Freely available Python tools for computational molecular biology and bioinformatics
-
Cock PJ, Antao T, Chang JT et al (2009) Biopython: freely available Python tools for computational molecular biology and bioinformatics. Bioinformatics 25:1422-1423
-
(2009)
Bioinformatics
, vol.25
, pp. 1422-1423
-
-
Cock, P.J.1
Antao, T.2
Chang, J.T.3
-
30
-
-
18644368714
-
The Bioperl toolkit: Perl modules for the life sciences
-
Stajich JE, Block D, Boulez K et al (2002) The Bioperl toolkit: Perl modules for the life sciences. Genome Res 12:1611-1618
-
(2002)
Genome Res
, vol.12
, pp. 1611-1618
-
-
Stajich, J.E.1
Block, D.2
Boulez, K.3
-
31
-
-
84859210032
-
Fast gappedread alignment with Bowtie 2
-
Langmead B, Salzberg SL (2012) Fast gappedread alignment with Bowtie 2. Nat Methods 9:357-359
-
(2012)
Nat Methods
, vol.9
, pp. 357-359
-
-
Langmead, B.1
Salzberg, S.L.2
-
32
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li H, Durbin R (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
33
-
-
84875634162
-
Integrative Genomics Viewer (IGV): High-performance genomics data visualization and exploration
-
Thorvaldsdottir H, Robinson JT, Mesirov JP (2013) Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief Bioinform 14:178-192
-
(2013)
Brief Bioinform
, vol.14
, pp. 178-192
-
-
Thorvaldsdottir, H.1
Robinson, J.T.2
Mesirov, J.P.3
-
34
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
Kurtz S, Phillippy A, Delcher AL et al (2004) Versatile and open software for comparing large genomes. Genome Biol 5:R12
-
(2004)
Genome Biol
, vol.5
, pp. R12
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
|