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Volumn 98, Issue 23, 2014, Pages 9749-9761

Characterization of the rumen microbiome of Indian Kankrej cattle (Bos indicus) adapted to different forage diet

Author keywords

EBI metagenomics; High forage diet; Kankrej cattle; Rumen microbiome; Shotgun sequencing

Indexed keywords

GENES; METABOLISM;

EID: 84911415100     PISSN: 01757598     EISSN: 14320614     Source Type: Journal    
DOI: 10.1007/s00253-014-6153-1     Document Type: Article
Times cited : (42)

References (48)
  • 1
    • 0025321505 scopus 로고
    • Energy contributions of volatile fatty acids from the gastrointestinal tract in various species
    • COI: 1:CAS:528:DyaK3cXlvVymtb0%3D, PID: 2181501
    • Bergman EN (1990) Energy contributions of volatile fatty acids from the gastrointestinal tract in various species. Physiol Rev 70:567–590
    • (1990) Physiol Rev , vol.70 , pp. 567-590
    • Bergman, E.N.1
  • 2
    • 0003333016 scopus 로고
    • Interconversions and production of volatile fatty acids in the sheep rumen
    • COI: 1:CAS:528:DyaF2MXksVyms7w%3D, PID: 16749123
    • Bergman EN, Reid RS, Murray MG, Brockway JM, Whitelaw FG (1965) Interconversions and production of volatile fatty acids in the sheep rumen. Biochem J 97:53–58
    • (1965) Biochem J , vol.97 , pp. 53-58
    • Bergman, E.N.1    Reid, R.S.2    Murray, M.G.3    Brockway, J.M.4    Whitelaw, F.G.5
  • 4
    • 0026514241 scopus 로고
    • Interaction of ruminal bacteria in the production and utilization of maltooligosaccharides from starch
    • COI: 1:CAS:528:DyaK38XotVWguw%3D%3D, PID: 1539992
    • Cotta MA (1992) Interaction of ruminal bacteria in the production and utilization of maltooligosaccharides from starch. Appl Environ Microbiol 58:48–54
    • (1992) Appl Environ Microbiol , vol.58 , pp. 48-54
    • Cotta, M.A.1
  • 7
    • 0026200781 scopus 로고
    • Effects of microbial synergism on fibre digestion in the rumen
    • COI: 1:STN:280:DyaK38%2Fos1KmsQ%3D%3D, PID: 1661009
    • Dehority BA (1991) Effects of microbial synergism on fibre digestion in the rumen. Proc Nutr Soc 50:149–159
    • (1991) Proc Nutr Soc , vol.50 , pp. 149-159
    • Dehority, B.A.1
  • 9
    • 33645232225 scopus 로고    scopus 로고
    • Integration of ruminal metabolism in dairy cattle
    • PID: 16527876
    • Firkins JL, Hristov AN, Hall MB, Varga GA, St-Pierre NR (2006) Integration of ruminal metabolism in dairy cattle. J Dairy Sci 89(Suppl 1):E31–E51. doi:10.3168/jds.S0022-0302(06)72362-1
    • (2006) J Dairy Sci , vol.89 , pp. E31-E51
    • Firkins, J.L.1    Hristov, A.N.2    Hall, M.B.3    Varga, G.A.4    St-Pierre, N.R.5
  • 10
    • 0031445098 scopus 로고    scopus 로고
    • The rumen microbial ecosystem—some recent developments
    • COI: 1:STN:280:DyaK1c7gvV2ltA%3D%3D, PID: 9447660
    • Flint HJ (1997) The rumen microbial ecosystem—some recent developments. Trends Microbiol 5:483–488. doi:10.1016/S0966-842X(97)01159-1
    • (1997) Trends Microbiol , vol.5 , pp. 483-488
    • Flint, H.J.1
  • 11
    • 84904425703 scopus 로고    scopus 로고
    • Ruminal bacterial community shifts in grain-, sugar-, and histidine-challenged dairy heifers
    • COI: 1:CAS:528:DC%2BC2cXpslCgtbg%3D, PID: 24881800
    • Golder HM, Denman SE, McSweeney C, Celi P, Lean IJ (2014) Ruminal bacterial community shifts in grain-, sugar-, and histidine-challenged dairy heifers. J Dairy Sci 97:5131–5150. doi:10.3168/jds. 2014-8003
    • (2014) J Dairy Sci , vol.97 , pp. 5131-5150
    • Golder, H.M.1    Denman, S.E.2    McSweeney, C.3    Celi, P.4    Lean, I.J.5
  • 13
    • 52649097569 scopus 로고    scopus 로고
    • Linkage of microbial ecology to phenotype: correlation of rumen microbial ecology to cattle's feed efficiency
    • COI: 1:CAS:528:DC%2BD1cXhtlans7bN, PID: 18785930
    • Guan LL, Nkrumah JD, Basarab JA, Moore SS (2008) Linkage of microbial ecology to phenotype: correlation of rumen microbial ecology to cattle's feed efficiency. FEMS Microbiol Lett 288:85–91. doi:10.1111/j.1574-6968.2008.01343.x
    • (2008) FEMS Microbiol Lett , vol.288 , pp. 85-91
    • Guan, L.L.1    Nkrumah, J.D.2    Basarab, J.A.3    Moore, S.S.4
  • 14
    • 34748886657 scopus 로고    scopus 로고
    • PAST: paleontological statistics software package for education and data analysis
    • Hammer O, Harper DAT, Ryan PD (2001) PAST: paleontological statistics software package for education and data analysis. Palaeontol Electron 4:1–9
    • (2001) Palaeontol Electron , vol.4 , pp. 1-9
    • Hammer, O.1    Harper, D.A.T.2    Ryan, P.D.3
  • 16
    • 79960576724 scopus 로고    scopus 로고
    • Impact of high-concentrate feeding and low ruminal pH on methanogens and protozoa in the rumen of dairy cows
    • COI: 1:CAS:528:DC%2BC3MXpt1OgsLw%3D, PID: 21625972
    • Hook SE, Steele MA, Northwood KS, Wright AD, McBride BW (2011) Impact of high-concentrate feeding and low ruminal pH on methanogens and protozoa in the rumen of dairy cows. Microb Ecol 62:94–105. doi:10.1007/s00248-011-9881-0
    • (2011) Microb Ecol , vol.62 , pp. 94-105
    • Hook, S.E.1    Steele, M.A.2    Northwood, K.S.3    Wright, A.D.4    McBride, B.W.5
  • 18
    • 84858185944 scopus 로고    scopus 로고
    • Composition and similarity of bovine rumen microbiota across individual animals
    • COI: 1:CAS:528:DC%2BC38Xks1Kit78%3D, PID: 22432013
    • Jami E, Mizrahi I (2012) Composition and similarity of bovine rumen microbiota across individual animals. PLoS One 7:e33306. doi:10.1371/journal.pone.0033306
    • (2012) PLoS One , vol.7 , pp. e33306
    • Jami, E.1    Mizrahi, I.2
  • 19
    • 84878276427 scopus 로고    scopus 로고
    • Exploring the bovine rumen bacterial community from birth to adulthood
    • PID: 23426008
    • Jami E, Israel A, Kotser A, Mizrahi I (2013) Exploring the bovine rumen bacterial community from birth to adulthood. ISME J 7:1069–1079. doi:10.1038/ismej.2013.2
    • (2013) ISME J , vol.7 , pp. 1069-1079
    • Jami, E.1    Israel, A.2    Kotser, A.3    Mizrahi, I.4
  • 20
    • 78149370598 scopus 로고    scopus 로고
    • Composition, spatial distribution, and diversity of the bacterial communities in the rumen of cows fed different forages
    • COI: 1:CAS:528:DC%2BC3cXhsFKmsrvK, PID: 21044097
    • Kong Y, Teather R, Forster R (2010) Composition, spatial distribution, and diversity of the bacterial communities in the rumen of cows fed different forages. FEMS Microbiol Ecol 74:612–622. doi:10.1111/j.1574-6941.2010.00977.x
    • (2010) FEMS Microbiol Ecol , vol.74 , pp. 612-622
    • Kong, Y.1    Teather, R.2    Forster, R.3
  • 23
    • 80053016072 scopus 로고    scopus 로고
    • Grass silage intake, rumen and blood variables, ultrasonic and body measurements, feeding behavior, and activity in pregnant beef heifers differing in phenotypic residual feed intake
    • COI: 1:CAS:528:DC%2BC3MXht1Onsr7I, PID: 21622881
    • Lawrence P, Kenny DA, Earley B, Crews DH Jr, McGee M (2011) Grass silage intake, rumen and blood variables, ultrasonic and body measurements, feeding behavior, and activity in pregnant beef heifers differing in phenotypic residual feed intake. J Anim Sci 89:3248–3261. doi:10.2527/jas. 2010-3774
    • (2011) J Anim Sci , vol.89 , pp. 3248-3261
    • Lawrence, P.1    Kenny, D.A.2    Earley, B.3    Crews, D.H.4    McGee, M.5
  • 24
    • 84880601726 scopus 로고    scopus 로고
    • Corn silage in dairy cow diets to reduce ruminal methanogenesis: effects on the rumen metabolically active microbial communities
    • COI: 1:CAS:528:DC%2BC3sXpsV2js7w%3D, PID: 23769352
    • Lettat A, Hassanat F, Benchaar C (2013) Corn silage in dairy cow diets to reduce ruminal methanogenesis: effects on the rumen metabolically active microbial communities. J Dairy Sci 96:5237–5248. doi:10.3168/jds. 2012-6481
    • (2013) J Dairy Sci , vol.96 , pp. 5237-5248
    • Lettat, A.1    Hassanat, F.2    Benchaar, C.3
  • 25
    • 33749572256 scopus 로고    scopus 로고
    • Butyrate induces profound changes in gene expression related to multiple signal pathways in bovine kidney epithelial cells
    • PID: 16972989
    • Li RW, Li C (2006) Butyrate induces profound changes in gene expression related to multiple signal pathways in bovine kidney epithelial cells. BMC Genomics 7:234. doi:10.1186/1471-2164-7-234
    • (2006) BMC Genomics , vol.7 , pp. 234
    • Li, R.W.1    Li, C.2
  • 26
    • 77953475357 scopus 로고    scopus 로고
    • Butyrate induced cell cycle arrest in bovine cells through targeting gene expression relevant to DNA replication apparatus
    • COI: 1:CAS:528:DC%2BD1cXpvV2gsr8%3D
    • Li CJ, Li RW (2008) Butyrate induced cell cycle arrest in bovine cells through targeting gene expression relevant to DNA replication apparatus. Gene Regul Syst Biol 2:113–123
    • (2008) Gene Regul Syst Biol , vol.2 , pp. 113-123
    • Li, C.J.1    Li, R.W.2
  • 27
    • 0018338356 scopus 로고
    • The biology of gastrointestinal bacteroides
    • COI: 1:CAS:528:DyaE1MXlvV2gtbk%3D, PID: 386933
    • Macy JM, Probst I (1979) The biology of gastrointestinal bacteroides. Annu Rev Microbiol 33:561–594. doi:10.1146/annurev.mi.33.100179.003021
    • (1979) Annu Rev Microbiol , vol.33 , pp. 561-594
    • Macy, J.M.1    Probst, I.2
  • 28
    • 84898670650 scopus 로고    scopus 로고
    • Relationship between the rumen microbiome and residual feed intake-efficiency of Brahman bulls stocked on bermudagrass pastures
    • McCann JC, Wiley LM, Forbes TD, Rouquette FM, Tedeschi LO (2014) Relationship between the rumen microbiome and residual feed intake-efficiency of Brahman bulls stocked on bermudagrass pastures. PloS One 9:e91864 doi:10.1371/journal.pone.0091864
    • (2014) PloS One , vol.e91864 , pp. 9
    • McCann, J.C.1    Wiley, L.M.2    Forbes, T.D.3    Rouquette, F.M.4    Tedeschi, L.O.5
  • 29
    • 0034121696 scopus 로고    scopus 로고
    • Phenotypic characterization of polysaccharidases produced by four Prevotella type strains
    • COI: 1:CAS:528:DC%2BD3cXkvVOrsbk%3D, PID: 10919398
    • Matsui H, Ogata K, Tajima K, Nakamura M, Nagamine T, Aminov RI, Benno Y (2000) Phenotypic characterization of polysaccharidases produced by four Prevotella type strains. Curr Microbiol 41:45–49
    • (2000) Curr Microbiol , vol.41 , pp. 45-49
    • Matsui, H.1    Ogata, K.2    Tajima, K.3    Nakamura, M.4    Nagamine, T.5    Aminov, R.I.6    Benno, Y.7
  • 30
    • 77951945504 scopus 로고    scopus 로고
    • Identifying biologically relevant differences between metagenomic communities
    • COI: 1:CAS:528:DC%2BC3cXivFGrsrs%3D, PID: 20130030
    • Parks DH, Beiko RG (2010) Identifying biologically relevant differences between metagenomic communities. Bioinformatics 26:715–721. doi:10.1093/bioinformatics/btq041
    • (2010) Bioinformatics , vol.26 , pp. 715-721
    • Parks, D.H.1    Beiko, R.G.2
  • 34
    • 84901251583 scopus 로고    scopus 로고
    • Phylogenetic distribution of three pathways for propionate production within the human gut microbiota
    • COI: 1:CAS:528:DC%2BC2cXosVyqt74%3D, PID: 24553467
    • Reichardt N, Duncan SH, Young P, Belenguer A, McWilliam Leitch C, Scott KP, Flint HJ, Louis P (2014) Phylogenetic distribution of three pathways for propionate production within the human gut microbiota. ISME J 8:1323–1335. doi:10.1038/ismej.2014.14
    • (2014) ISME J , vol.8 , pp. 1323-1335
    • Reichardt, N.1    Duncan, S.H.2    Young, P.3    Belenguer, A.4    McWilliam Leitch, C.5    Scott, K.P.6    Flint, H.J.7    Louis, P.8
  • 35
    • 58149123596 scopus 로고    scopus 로고
    • Quantitative analysis of cellulose degradation and growth of cellulolytic bacteria in the rumen
    • COI: 1:CAS:528:DC%2BD1MXptFGmtw%3D%3D, PID: 19120465
    • Russell JB, Muck RE, Weimer PJ (2009) Quantitative analysis of cellulose degradation and growth of cellulolytic bacteria in the rumen. FEMS Microbiol Ecol 67:183–197. doi:10.1111/j.1574-6941.2008.00633.x
    • (2009) FEMS Microbiol Ecol , vol.67 , pp. 183-197
    • Russell, J.B.1    Muck, R.E.2    Weimer, P.J.3
  • 36
    • 84899095620 scopus 로고    scopus 로고
    • Extensive microbial and functional diversity within the chicken cecal microbiome
    • PID: 24657972
    • Sergeant MJ, Constantinidou C, Cogan TA, Bedford MR, Penn CW, Pallen MJ (2014) Extensive microbial and functional diversity within the chicken cecal microbiome. PLoS One 9:e91941. doi:10.1371/journal.pone.0091941
    • (2014) PLoS One , vol.9 , pp. e91941
    • Sergeant, M.J.1    Constantinidou, C.2    Cogan, T.A.3    Bedford, M.R.4    Penn, C.W.5    Pallen, M.J.6
  • 38
    • 34247620908 scopus 로고    scopus 로고
    • Dominance of Prevotella and low abundance of classical ruminal bacterial species in the bovine rumen revealed by relative quantification real-time PCR
    • COI: 1:CAS:528:DC%2BD2sXks1ahurk%3D, PID: 17235560
    • Stevenson DM, Weimer PJ (2007) Dominance of Prevotella and low abundance of classical ruminal bacterial species in the bovine rumen revealed by relative quantification real-time PCR. Appl Microbiol Biotechnol 75:165–174. doi:10.1007/s00253-006-0802-y
    • (2007) Appl Microbiol Biotechnol , vol.75 , pp. 165-174
    • Stevenson, D.M.1    Weimer, P.J.2
  • 39
    • 0035374841 scopus 로고    scopus 로고
    • Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR
    • COI: 1:CAS:528:DC%2BD3MXkt1CitLs%3D, PID: 11375193
    • Tajima K, Aminov RI, Nagamine T, Matsui H, Nakamura M, Benno Y (2001) Diet-dependent shifts in the bacterial population of the rumen revealed with real-time PCR. Appl Environ Microbiol 67:2766–2774. doi:10.1128/AEM. 67.6.2766-2774.2001
    • (2001) Appl Environ Microbiol , vol.67 , pp. 2766-2774
    • Tajima, K.1    Aminov, R.I.2    Nagamine, T.3    Matsui, H.4    Nakamura, M.5    Benno, Y.6
  • 40
    • 58749112734 scopus 로고    scopus 로고
    • A core gut microbiome in obese and lean twins
    • COI: 1:CAS:528:DC%2BD1MXotlOlsw%3D%3D, PID: 19043404
    • Turnbaugh PJ (2009) A core gut microbiome in obese and lean twins. Nature 457:480–484. doi:10.1038/nature07540
    • (2009) Nature , vol.457 , pp. 480-484
    • Turnbaugh, P.J.1
  • 41
    • 33845874101 scopus 로고    scopus 로고
    • An obesity-associated gut microbiome with increased capacity for energy harvest
    • PID: 17183312
    • Turnbaugh PJ, Ley RE, Mahowald MA, Magrini V, Mardis ER, Gordon JI (2006) An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444:1027–1031. doi:10.1038/nature05414
    • (2006) Nature , vol.444 , pp. 1027-1031
    • Turnbaugh, P.J.1    Ley, R.E.2    Mahowald, M.A.3    Magrini, V.4    Mardis, E.R.5    Gordon, J.I.6
  • 42
    • 41849127118 scopus 로고    scopus 로고
    • Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome
    • COI: 1:CAS:528:DC%2BD1cXmtlejur0%3D, PID: 18407065
    • Turnbaugh PJ, Backhed F, Fulton L, Gordon JI (2008) Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome. Cell Host Microbe 3:213–223. doi:10.1016/j.chom.2008.02.015
    • (2008) Cell Host Microbe , vol.3 , pp. 213-223
    • Turnbaugh, P.J.1    Backhed, F.2    Fulton, L.3    Gordon, J.I.4
  • 43
    • 0020189446 scopus 로고
    • The measurement of liquid and solid digesta retention in ruminants, equines and rabbits given timothy (Phleum pratense) hay
    • COI: 1:STN:280:DyaL3s%2FgtVagsA%3D%3D, PID: 6810917
    • Uden P, Rounsaville TR, Wiggans GR, Van Soest PJ (1982) The measurement of liquid and solid digesta retention in ruminants, equines and rabbits given timothy (Phleum pratense) hay. Br J Nutr 48:329–339
    • (1982) Br J Nutr , vol.48 , pp. 329-339
    • Uden, P.1    Rounsaville, T.R.2    Wiggans, G.R.3    Van Soest, P.J.4
  • 45
    • 49749121708 scopus 로고    scopus 로고
    • The species composition of the human intestinal microbiota differs between particle-associated and liquid phase communities
    • COI: 1:CAS:528:DC%2BD1MXivFyrsQ%3D%3D, PID: 18713272
    • Walker AW, Duncan SH, Harmsen HJ, Holtrop G, Welling GW, Flint HJ (2008) The species composition of the human intestinal microbiota differs between particle-associated and liquid phase communities. Environ Microbiol 10:3275–3283. doi:10.1111/j.1462-2920.2008.01717.x
    • (2008) Environ Microbiol , vol.10 , pp. 3275-3283
    • Walker, A.W.1    Duncan, S.H.2    Harmsen, H.J.3    Holtrop, G.4    Welling, G.W.5    Flint, H.J.6
  • 46
    • 0042882421 scopus 로고    scopus 로고
    • Molecular characterization of the microbial species that colonize human ileal and colonic mucosa by using 16S rDNA sequence analysis
    • COI: 1:CAS:528:DC%2BD3sXns1Sht7g%3D, PID: 12911699
    • Wang X, Heazlewood SP, Krause DO, Florin TH (2003) Molecular characterization of the microbial species that colonize human ileal and colonic mucosa by using 16S rDNA sequence analysis. J Appl Microbiol 95:508–520
    • (2003) J Appl Microbiol , vol.95 , pp. 508-520
    • Wang, X.1    Heazlewood, S.P.2    Krause, D.O.3    Florin, T.H.4
  • 47
    • 0031816030 scopus 로고    scopus 로고
    • Phylogenetic analysis of rumen bacteria by comparative sequence analysis of cloned 16S rRNA genes
    • COI: 1:CAS:528:DyaK1cXlsFeisbw%3D, PID: 16887636
    • Whitford MF, Forster RJ, Beard CE, Gong J, Teather RM (1998) Phylogenetic analysis of rumen bacteria by comparative sequence analysis of cloned 16S rRNA genes. Anaerobe 4:153–163. doi:10.1006/anae.1998.0155
    • (1998) Anaerobe , vol.4 , pp. 153-163
    • Whitford, M.F.1    Forster, R.J.2    Beard, C.E.3    Gong, J.4    Teather, R.M.5
  • 48
    • 79958771228 scopus 로고    scopus 로고
    • Does the complexity of the rumen microbial ecology preclude methane mitigation?
    • Wright AD, Klieve AV (2011) Does the complexity of the rumen microbial ecology preclude methane mitigation? Anim Feed Sci Technol 166–167:248–253
    • (2011) Anim Feed Sci Technol , vol.166-167 , pp. 248-253
    • Wright, A.D.1    Klieve, A.V.2


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