메뉴 건너뛰기




Volumn 30, Issue 22, 2014, Pages 3268-3269

Basic4Cseq: An R/Bioconductor package for analyzing 4C-seq data

Author keywords

[No Author keywords available]

Indexed keywords

CHEMISTRY; CHROMOSOME; COMPUTER PROGRAM; HIGH THROUGHPUT SEQUENCING;

EID: 84911384951     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu497     Document Type: Article
Times cited : (18)

References (10)
  • 1
    • 80555154012 scopus 로고    scopus 로고
    • Detecting long-range chromatin interactions using the chromosome conformation capture sequencing (4c-seq) method
    • Gheldof, N. et al. (2012) Detecting long-range chromatin interactions using the chromosome conformation capture sequencing (4c-seq) method. Methods Mol. Biol., 786, 212-225.
    • (2012) Methods Mol. Biol. , vol.786 , pp. 212-225
    • Gheldof, N.1
  • 2
    • 68549104404 scopus 로고    scopus 로고
    • The Sequence alignment/map (SAM) format and SAMtools
    • Li, H. et al. (2009) The Sequence alignment/map (SAM) format and SAMtools. Bioinformatics, 25, 2078-2079.
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1
  • 3
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan, A. and Hall, I. (2010) BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics, 26, 841-842.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.1    Hall, I.2
  • 4
    • 84870310006 scopus 로고    scopus 로고
    • Determining long-range chromatin interactions for selected genomic sites using 4C-seq technology: From fixation to computation
    • Splinter, E. et al. (2012) Determining long-range chromatin interactions for selected genomic sites using 4C-seq technology: from fixation to computation. Methods, 58, 221-230.
    • (2012) Methods , vol.58 , pp. 221-230
    • Splinter, E.1
  • 5
    • 84857051019 scopus 로고    scopus 로고
    • Dynamic long-range chromatin interactions control Myb proto-oncogene transcription during erythroid development
    • Stadhouders, R. et al. (2012) Dynamic long-range chromatin interactions control Myb proto-oncogene transcription during erythroid development. EMBO J., 31, 986-999.
    • (2012) EMBO J. , vol.31 , pp. 986-999
    • Stadhouders, R.1
  • 6
    • 84880531963 scopus 로고    scopus 로고
    • R3Cseq: An R/Bioconductor package for the discovery of long-range genomic interactions from chromosome conformation capture and next-generation sequencing data
    • Thongjuea, S. et al. (2013) r3Cseq: an R/Bioconductor package for the discovery of long-range genomic interactions from chromosome conformation capture and next-generation sequencing data. Nucleic Acids Res., 41, e132.
    • (2013) Nucleic Acids Res. , vol.41 , pp. e132
    • Thongjuea, S.1
  • 7
    • 84867003195 scopus 로고    scopus 로고
    • Robust 4C-seq data analysis to screen for regulatory DNA interactions
    • van de Werken, H. et al. (2012a) Robust 4C-seq data analysis to screen for regulatory DNA interactions. Nat. Methods, 9, 969-971.
    • (2012) Nat. Methods , vol.9 , pp. 969-971
    • Van De Werken, H.1
  • 8
    • 84865502890 scopus 로고    scopus 로고
    • 4C technology: Protocols and data analysis
    • van de Werken, H. et al. (2012b) 4C technology: protocols and data analysis. Methods Enzymol., 513, 89-112.
    • (2012) Methods Enzymol. , vol.513 , pp. 89-112
    • Van De Werken, H.1
  • 9
    • 84899819486 scopus 로고    scopus 로고
    • FourSig: A method for determining chromosomal interactions in 4C-Seq data
    • Williams, R. et al. (2014) fourSig: a method for determining chromosomal interactions in 4C-Seq data. Nucleic Acids Res, 42, e68.
    • (2014) Nucleic Acids Res , vol.42 , pp. e68
    • Williams, R.1
  • 10
    • 84881167398 scopus 로고    scopus 로고
    • RCircos: An R package for Circos 2D track plots
    • Zhang, H. et al. (2013) RCircos: an R package for Circos 2D track plots. BMC Bioinformatics, 14, 244.
    • (2013) BMC Bioinformatics , vol.14 , pp. 244
    • Zhang, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.