-
1
-
-
79957932376
-
Dindel: Accurate indel calls from short-read data
-
Albers, C.A. et al. (2011) Dindel: accurate indel calls from short-read data. Genome Res., 21, 961-973.
-
(2011)
Genome Res.
, vol.21
, pp. 961-973
-
-
Albers, C.A.1
-
2
-
-
84893695366
-
TIGRA: A targeted iterative graph routing assembler for breakpoint assembly
-
Chen, K. et al. (2014) TIGRA: a targeted iterative graph routing assembler for breakpoint assembly. Genome Res., 24, 310-317.
-
(2014)
Genome Res.
, vol.24
, pp. 310-317
-
-
Chen, K.1
-
3
-
-
84859319800
-
Computational techniques for human genome resequen-cing using mated gapped reads
-
Carnevali, P. et al. (2012) Computational techniques for human genome resequen-cing using mated gapped reads. J. Comput. Biol., 19, 279-292.
-
(2012)
J. Comput. Biol.
, vol.19
, pp. 279-292
-
-
Carnevali, P.1
-
4
-
-
79955483667
-
A framework for variation discovery and genotyping using next-generation DNA sequencing data
-
DePristo, M.A. et al. (2011) A framework for variation discovery and genotyping using next-generation DNA sequencing data. Nat. Genet., 43, 491-498.
-
(2011)
Nat. Genet.
, vol.43
, pp. 491-498
-
-
Depristo, M.A.1
-
5
-
-
84887491073
-
Development and validation of a clinical cancer gen-omic profiling test based on massively parallel DNA sequencing
-
Frampton, G.M. et al. (2013) Development and validation of a clinical cancer gen-omic profiling test based on massively parallel DNA sequencing. Nat. Biotechnol., 31, 1023-1031.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 1023-1031
-
-
Frampton, G.M.1
-
7
-
-
77957579023
-
Improved variant discovery through local realignment of short-read next-generation sequencing data using SRMA
-
Homer, N. and Nelson, S.F. (2010) Improved variant discovery through local realignment of short-read next-generation sequencing data using SRMA. Genome Biol., 11, R99.
-
(2010)
Genome Biol.
, vol.11
, pp. R99
-
-
Homer, N.1
Nelson, S.F.2
-
8
-
-
84856246802
-
De novo assembly and genotyping of variants using colored de bruijn graphs
-
Iqbal, Z. et al. (2012) De novo assembly and genotyping of variants using colored de bruijn graphs. Nat. Genet., 44, 226-232.
-
(2012)
Nat. Genet.
, vol.44
, pp. 226-232
-
-
Iqbal, Z.1
-
9
-
-
0036226603
-
BLAT-the BLAST-like alignment tool
-
Kent, W.J. (2002) BLAT-the BLAST-like alignment tool. Genome Res., 12, 656-664.
-
(2002)
Genome Res.
, vol.12
, pp. 656-664
-
-
Kent, W.J.1
-
10
-
-
84864119729
-
Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly
-
Li, H. (2012) Exploring single-sample SNP and INDEL calling with whole-genome de novo assembly. Bioinformatics, 28, 1838-1844.
-
(2012)
Bioinformatics
, vol.28
, pp. 1838-1844
-
-
Li, H.1
-
12
-
-
67649884743
-
Fast and accurate short read alignment with burrows-wheeler transform
-
Li, H. and Durbin, R. (2009) Fast and accurate short read alignment with burrows-wheeler transform. Bioinformatics, 25, 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
13
-
-
84871988179
-
SOAPindel: Efficient identification of indels from short paired reads
-
Li, S. et al. (2013) SOAPindel: efficient identification of indels from short paired reads. Genome Res., 23, 195-200.
-
(2013)
Genome Res.
, vol.23
, pp. 195-200
-
-
Li, S.1
-
14
-
-
0035859921
-
An Eulerian path approach to DNA fragment assembly
-
Pevzner, P.A. et al. (2001) An Eulerian path approach to DNA fragment assembly. Proc. Natl Acad. Sci., 98, 9748-9753.
-
(2001)
Proc. Natl Acad. Sci.
, vol.98
, pp. 9748-9753
-
-
Pevzner, P.A.1
-
15
-
-
84864153492
-
Strelka: Accurate somatic small-variant calling from sequenced tumor-normal sample pairs
-
Saunders, C.T. et al. (2012) Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs. Bioinformatics, 28, 1811-1817.
-
(2012)
Bioinformatics
, vol.28
, pp. 1811-1817
-
-
Saunders, C.T.1
-
16
-
-
84877028141
-
Comprehensive molecular portraits of human breast tumours
-
The Cancer Genome Atlas Network. (2012) Comprehensive molecular portraits of human breast tumours. Nature, 490, 61-70.
-
(2012)
Nature
, vol.490
, pp. 61-70
-
-
-
17
-
-
84905581610
-
Integrated RNA and DNA sequencing improves mutation detection in low purity tumors
-
Wilkerson, M.D. et al. (2014) Integrated RNA and DNA sequencing improves mutation detection in low purity tumors. Nucleic Acids Research, 42, e107.
-
(2014)
Nucleic Acids Research
, vol.42
, pp. e107
-
-
Wilkerson, M.D.1
-
18
-
-
70350694443
-
Pindel: A pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
-
Ye, K. et al. (2009) Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics, 25, 2865-2871.
-
(2009)
Bioinformatics
, vol.25
, pp. 2865-2871
-
-
Ye, K.1
|