-
1
-
-
65149103048
-
Constructing genomic maps of positive selection in humans: where do we go from here?
-
Akey J.M. (2009) Constructing genomic maps of positive selection in humans: where do we go from here? Genome Res., 19, 711-722.
-
(2009)
Genome Res.
, vol.19
, pp. 711-722
-
-
Akey, J.M.1
-
2
-
-
52049099430
-
Linkage disequilibrium decay and haplotype block structure in the pig
-
Amaral A.J., Megens H.J., Crooijmans R.P.M.A., Heuven H.C.M., Groenen M.A.M. (2008) Linkage disequilibrium decay and haplotype block structure in the pig. Genetics, 179, 569-579.
-
(2008)
Genetics
, vol.179
, pp. 569-579
-
-
Amaral, A.J.1
Megens, H.J.2
Crooijmans, R.P.M.A.3
Heuven, H.C.M.4
Groenen, M.A.M.5
-
3
-
-
84855798536
-
Estimation of linkage disequilibrium in four US pig breeds
-
Badke Y.M., Bates R.O., Ernst C.W., Schwab C., Steibel J.P. (2012) Estimation of linkage disequilibrium in four US pig breeds. BMC Genom., 13, 24.
-
(2012)
BMC Genom.
, vol.13
, pp. 24
-
-
Badke, Y.M.1
Bates, R.O.2
Ernst, C.W.3
Schwab, C.4
Steibel, J.P.5
-
4
-
-
13444269543
-
Haploview: analysis and visualization of LD and haplotype maps
-
Barrett J.C., Fry B., Maller J., Daly M.J. (2005) Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics, 21, 263-265.
-
(2005)
Bioinformatics
, vol.21
, pp. 263-265
-
-
Barrett, J.C.1
Fry, B.2
Maller, J.3
Daly, M.J.4
-
6
-
-
3242891359
-
Using the Map Viewer to Explore Genomes
-
J. McEntyre, J. Ostell (eds), National Center for Biotechnology Information (US), Bethesda (MD) - Chapter 20 (available from
-
Dombrowski S.M., Maglott D. (2002) Using the Map Viewer to Explore Genomes. In: J. McEntyre, J. Ostell (eds), The NCBI Handbook [Internet]. National Center for Biotechnology Information (US), Bethesda (MD), pp. 1-9. Chapter 20 (available from: http://www.ncbi.nlm.nih.gov/books/NBK21089/).
-
(2002)
The NCBI Handbook [Internet]
, pp. 1-9
-
-
Dombrowski, S.M.1
Maglott, D.2
-
7
-
-
0026319058
-
Identification of a mutation in porcine ryanodine receptor associated with malignant hyperthermia
-
Fujii J., Otsu K., Zorzato F., DeLeon S., Khanna V.K., Weiler J.E., O'Brien P.J., McLennan D.H. (1991) Identification of a mutation in porcine ryanodine receptor associated with malignant hyperthermia. Science, 253, 448-451.
-
(1991)
Science
, vol.253
, pp. 448-451
-
-
Fujii, J.1
Otsu, K.2
Zorzato, F.3
DeLeon, S.4
Khanna, V.K.5
Weiler, J.E.6
O'Brien, P.J.7
McLennan, D.H.8
-
8
-
-
18444369013
-
The structure of haplotype blocks in the human genome
-
Gabriel S.B., Schaffner S.F., Nguyen H., Moore J.M., Roy J., Blumenstiel B., Higgins J., DeFelice M., Lochner A., Faggart M., Liu-Cordero S.N., Rotimi C., Adeyemo A., Cooper R., Ward R., Lander E.S., Daly M.J., Altshuler D. (2002) The structure of haplotype blocks in the human genome. Science, 23, 2225-2229.
-
(2002)
Science
, vol.23
, pp. 2225-2229
-
-
Gabriel, S.B.1
Schaffner, S.F.2
Nguyen, H.3
Moore, J.M.4
Roy, J.5
Blumenstiel, B.6
Higgins, J.7
DeFelice, M.8
Lochner, A.9
Faggart, M.10
Liu-Cordero, S.N.11
Rotimi, C.12
Adeyemo, A.13
Cooper, R.14
Ward, R.15
Lander, E.S.16
Daly, M.J.17
Altshuler, D.18
-
9
-
-
66249122107
-
Mapping genes for complex traits in domestic animals and their use in breeding programmes
-
Goddard M.E., Hayes B.J. (2009) Mapping genes for complex traits in domestic animals and their use in breeding programmes. Nat. Rev. Genet., 10, 381-391.
-
(2009)
Nat. Rev. Genet.
, vol.10
, pp. 381-391
-
-
Goddard, M.E.1
Hayes, B.J.2
-
10
-
-
33646226097
-
Linkage disequilibrium in finite populations
-
Hill W.G., Robertson A. (1986) Linkage disequilibrium in finite populations. Theor. Appl. Genet., 38, 226-231.
-
(1986)
Theor. Appl. Genet.
, vol.38
, pp. 226-231
-
-
Hill, W.G.1
Robertson, A.2
-
11
-
-
84864499787
-
Effects of polymorphisms in the porcine microRNA miR-1 locus on muscle fiber type composition and miR-1 expression
-
Hong J.S., Noh S.H., Lee J.S., Kim J.M., Hong K.C., Lee Y.S. (2012) Effects of polymorphisms in the porcine microRNA miR-1 locus on muscle fiber type composition and miR-1 expression. Gene, 506, 211-216.
-
(2012)
Gene
, vol.506
, pp. 211-216
-
-
Hong, J.S.1
Noh, S.H.2
Lee, J.S.3
Kim, J.M.4
Hong, K.C.5
Lee, Y.S.6
-
12
-
-
84897377942
-
Selection for complex traits leaves little or no classic signatures of selection
-
Kemper K.E., Saxton S.J., Bolormaa S., Hayes B.J., Goddard M.E. (2014) Selection for complex traits leaves little or no classic signatures of selection. BMC Genom., 15, 246.
-
(2014)
BMC Genom.
, vol.15
, pp. 246
-
-
Kemper, K.E.1
Saxton, S.J.2
Bolormaa, S.3
Hayes, B.J.4
Goddard, M.E.5
-
13
-
-
70349291078
-
Multidimensional scaling using majorization: SMACOF in R
-
de Leeuw J., Mair P. (2009) Multidimensional scaling using majorization: SMACOF in R. J. Stat. Softw., 31, 1-30.
-
(2009)
J. Stat. Softw.
, vol.31
, pp. 1-30
-
-
de Leeuw, J.1
Mair, P.2
-
14
-
-
34249804774
-
A genome scan reveals QTL for growth, fatness, leanness and meat quality in a Duroc-Pietrain resource population
-
Liu G., Jennen D.G.J., Tholen E., Jüngst H., Kleinwächter T., Hölker M., Tesfaye D., Ün C., Schreinemachers H.J., Murani E., Ponsuksili S., Kim J.J., Schellander K., Wimmers K. (2007) A genome scan reveals QTL for growth, fatness, leanness and meat quality in a Duroc-Pietrain resource population. Anim. Genet., 38, 241-252.
-
(2007)
Anim. Genet.
, vol.38
, pp. 241-252
-
-
Liu, G.1
Jennen, D.G.J.2
Tholen, E.3
Jüngst, H.4
Kleinwächter, T.5
Hölker, M.6
Tesfaye, D.7
Ün, C.8
Schreinemachers, H.J.9
Murani, E.10
Ponsuksili, S.11
Kim, J.J.12
Schellander, K.13
Wimmers, K.14
-
15
-
-
70349236112
-
CaMKII negatively regulates calcineurin-NFAT signaling in cardiac myocytes
-
MacDonnell S.M., Weisser-Thomas J., Kubo H., Hanscome M., Liu Q., Jaleel N., Berretta R., Chen X., Brown J.H., Sabri A.K., Molkentin J.D., Houser S.R. (2009) CaMKII negatively regulates calcineurin-NFAT signaling in cardiac myocytes. Circ. Res., 105, 316-325.
-
(2009)
Circ. Res.
, vol.105
, pp. 316-325
-
-
MacDonnell, S.M.1
Weisser-Thomas, J.2
Kubo, H.3
Hanscome, M.4
Liu, Q.5
Jaleel, N.6
Berretta, R.7
Chen, X.8
Brown, J.H.9
Sabri, A.K.10
Molkentin, J.D.11
Houser, S.R.12
-
16
-
-
33748807182
-
Quantitative trait loci associated with AutoFOM grading characteristics, carcass cuts and chemical body composition during growth of Sus scrofa
-
Mohrmann M., Roehe R., Knap P.W., Looft H., Plastow G.S., Kalm E. (2006) Quantitative trait loci associated with AutoFOM grading characteristics, carcass cuts and chemical body composition during growth of Sus scrofa. Anim. Genet., 37, 435-443.
-
(2006)
Anim. Genet.
, vol.37
, pp. 435-443
-
-
Mohrmann, M.1
Roehe, R.2
Knap, P.W.3
Looft, H.4
Plastow, G.S.5
Kalm, E.6
-
17
-
-
20544447886
-
Linkage disequilibrium for different scales and applications
-
Mueller J.C. (2004) Linkage disequilibrium for different scales and applications. Brief Bioinform., 5, 355-364.
-
(2004)
Brief Bioinform.
, vol.5
, pp. 355-364
-
-
Mueller, J.C.1
-
18
-
-
29444452921
-
Molecular signatures of natural selection
-
Nielsen R. (2005) Molecular signatures of natural selection. Annu. Rev. Genet., 39, 197-218.
-
(2005)
Annu. Rev. Genet.
, vol.39
, pp. 197-218
-
-
Nielsen, R.1
-
19
-
-
33846006923
-
Population structure and eigenanalysis
-
Patterson N., Price A., Reich D. (2006) Population structure and eigenanalysis. PLoS Genet., 2, e190.
-
(2006)
PLoS Genet.
, vol.2
, pp. e190
-
-
Patterson, N.1
Price, A.2
Reich, D.3
-
20
-
-
0034977045
-
Linkage disequilibrium in humans: models and data
-
Pritchard J.K., Przeworski M. (2001) Linkage disequilibrium in humans: models and data. Am. J. Hum. Genet., 69, 1-14.
-
(2001)
Am. J. Hum. Genet.
, vol.69
, pp. 1-14
-
-
Pritchard, J.K.1
Przeworski, M.2
-
21
-
-
34548292504
-
PLINK: a tool set for whole-genome association and population-based linkage analyses
-
Purcell S., Neale B., Todd-Brown Thomas L., Ferreira M.A., Bender D., Maller J., Sklar P., de Bakker P.I., Daly M.J., Sham P.C. (2007) PLINK: a tool set for whole-genome association and population-based linkage analyses. Am. J. Hum. Genet., 81, 559-575.
-
(2007)
Am. J. Hum. Genet.
, vol.81
, pp. 559-575
-
-
Purcell, S.1
Neale, B.2
Todd-Brown Thomas, L.3
Ferreira, M.A.4
Bender, D.5
Maller, J.6
Sklar, P.7
de Bakker, P.I.8
Daly, M.J.9
Sham, P.C.10
-
22
-
-
77954569982
-
A genome-wide scan for signatures of recent selection in holstein cattle
-
Qanbari S., Pimentel E.C.G., Tetens J., Thaller G., Lichtner P., Sharifi A.R., Simianer H. (2010a) A genome-wide scan for signatures of recent selection in holstein cattle. Anim. Genet., 44, 377-389.
-
(2010)
Anim. Genet.
, vol.44
, pp. 377-389
-
-
Qanbari, S.1
Pimentel, E.C.G.2
Tetens, J.3
Thaller, G.4
Lichtner, P.5
Sharifi, A.R.6
Simianer, H.7
-
23
-
-
77954580306
-
The pattern of linkage disequilibrium in German Holstein cattle
-
Qanbari S., Pimentel E.C.G., Tetens J., Thaller G., Lichtner P., Sharifi A.R., Simianer H. (2010b) The pattern of linkage disequilibrium in German Holstein cattle. Anim. Genet., 41, 346-356.
-
(2010)
Anim. Genet.
, vol.41
, pp. 346-356
-
-
Qanbari, S.1
Pimentel, E.C.G.2
Tetens, J.3
Thaller, G.4
Lichtner, P.5
Sharifi, A.R.6
Simianer, H.7
-
24
-
-
68349137618
-
Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology
-
Ramos A.M., Crooijmans R.P.M.A., Affara N.A., Amaral A.J., Archibald A.L., Beever J.E., Bendixen C., Churcher C., Clark R., Dehais P., Hansen M.S., Hedegaard J., Hu Z.L., Kerstens H.H., Law A.S., Megens H.J., Milan D., Nonneman D.J., Rohrer G.A., Rothschild M.F., Smith T.P.L., Schnabel R.D., Tassell C.P.V., Taylor J.F., Wiedmann R.T., Schook L.B., Groenen M.A.M. (2009) Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology. PLoS ONE, 4, e6524.
-
(2009)
PLoS ONE
, vol.4
, pp. e6524
-
-
Ramos, A.M.1
Crooijmans, R.P.M.A.2
Affara, N.A.3
Amaral, A.J.4
Archibald, A.L.5
Beever, J.E.6
Bendixen, C.7
Churcher, C.8
Clark, R.9
Dehais, P.10
Hansen, M.S.11
Hedegaard, J.12
Hu, Z.L.13
Kerstens, H.H.14
Law, A.S.15
Megens, H.J.16
Milan, D.17
Nonneman, D.J.18
Rohrer, G.A.19
Rothschild, M.F.20
Smith, T.P.L.21
Schnabel, R.D.22
Tassell, C.P.V.23
Taylor, J.F.24
Wiedmann, R.T.25
Schook, L.B.26
Groenen, M.A.M.27
more..
-
26
-
-
84856243023
-
Joint QTL analysis of three connected F2-crosses in pigs
-
Rückert C., Bennewitz J. (2010) Joint QTL analysis of three connected F2-crosses in pigs. Genet. Sel. Evol., 42, 40.
-
(2010)
Genet. Sel. Evol.
, vol.42
, pp. 40
-
-
Rückert, C.1
Bennewitz, J.2
-
27
-
-
0037167852
-
Detecting recent positive selection in the human genome from haplotype structure
-
Sabeti P.C., Reich D.E., Higgins J.M., Levine H.Z., Richter D.J., Schaffner S.F., Gabriel S.B., Platko J.V., Patterson N.J., McDonald G.J., Ackerman H.C., Campbell S.J., Altshuler D., Cooper R., Kwiatkowski D., Ward R., Lander E.S. (2002) Detecting recent positive selection in the human genome from haplotype structure. Nature, 419, 832-837.
-
(2002)
Nature
, vol.419
, pp. 832-837
-
-
Sabeti, P.C.1
Reich, D.E.2
Higgins, J.M.3
Levine, H.Z.4
Richter, D.J.5
Schaffner, S.F.6
Gabriel, S.B.7
Platko, J.V.8
Patterson, N.J.9
McDonald, G.J.10
Ackerman, H.C.11
Campbell, S.J.12
Altshuler, D.13
Cooper, R.14
Kwiatkowski, D.15
Ward, R.16
Lander, E.S.17
-
28
-
-
33644974019
-
A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase
-
Scheet P., Stephens M. (2006) A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am. J. Hum. Genet., 78, 629-644.
-
(2006)
Am. J. Hum. Genet.
, vol.78
, pp. 629-644
-
-
Scheet, P.1
Stephens, M.2
-
29
-
-
17444402038
-
A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphism
-
Schmid K.J., Ramos-Onsins S., Ringys-Beckstein H., Weisshaar B., Mitchell-Olds T. (2005) A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphism. Genetics, 169, 1601-1615.
-
(2005)
Genetics
, vol.169
, pp. 1601-1615
-
-
Schmid, K.J.1
Ramos-Onsins, S.2
Ringys-Beckstein, H.3
Weisshaar, B.4
Mitchell-Olds, T.5
-
31
-
-
0042424602
-
Statistical significance for genomewide studies
-
Storey J.D., Tibshirani R. (2003) Statistical significance for genomewide studies. Proc. Nat. Acad. Sci., 100, 9440-9445.
-
(2003)
Proc. Nat. Acad. Sci.
, vol.100
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
-
32
-
-
84898884906
-
Genome-wide association analysis for growth, muscularity and meat quality in Piétrain pigs
-
Stratz P., Wellmann R., Preuss S., Wimmers K., Bennewitz J. (2014) Genome-wide association analysis for growth, muscularity and meat quality in Piétrain pigs. Anim. Genet., 45, 350-356.
-
(2014)
Anim. Genet.
, vol.45
, pp. 350-356
-
-
Stratz, P.1
Wellmann, R.2
Preuss, S.3
Wimmers, K.4
Bennewitz, J.5
-
33
-
-
79955587949
-
Extent of linkage disequilibrium and effective population size in Finnish Landrace and Finnish Yorkshire pig breeds
-
Uimari P., Tapio M. (2011) Extent of linkage disequilibrium and effective population size in Finnish Landrace and Finnish Yorkshire pig breeds. J. Anim. Sci., 89, 609-614.
-
(2011)
J. Anim. Sci.
, vol.89
, pp. 609-614
-
-
Uimari, P.1
Tapio, M.2
-
34
-
-
84882659122
-
Linkage disequilibrium and haplotype block structure in six commercial pig lines
-
Veroneze R., Lopes P.S., Guimarães S.E., Silva F.F., Lopes M.S., Harlizius B., Knol E.F. (2013) Linkage disequilibrium and haplotype block structure in six commercial pig lines. J. Anim. Sci., 91, 3493-3501.
-
(2013)
J. Anim. Sci.
, vol.91
, pp. 3493-3501
-
-
Veroneze, R.1
Lopes, P.S.2
Guimarães, S.E.3
Silva, F.F.4
Lopes, M.S.5
Harlizius, B.6
Knol, E.F.7
-
35
-
-
84880861325
-
Genomic selection using low density marker panels with application to a sire line in pigs
-
Wellmann R., Preuß S., Tholen E., Heinkel J., Wimmers K., Bennewitz J. (2013) Genomic selection using low density marker panels with application to a sire line in pigs. Genet. Sel. Evol., 45, 28.
-
(2013)
Genet. Sel. Evol.
, vol.45
, pp. 28
-
-
Wellmann, R.1
Preuß, S.2
Tholen, E.3
Heinkel, J.4
Wimmers, K.5
Bennewitz, J.6
|