메뉴 건너뛰기




Volumn 131, Issue 6, 2014, Pages 473-482

Investigations on the pattern of linkage disequilibrium and selection signatures in the genomes of German Piétrain pigs

Author keywords

Selective sweeps; Single nucleotide polymorphism; Sire line

Indexed keywords

SUIDAE;

EID: 84911371920     PISSN: 09312668     EISSN: 14390388     Source Type: Journal    
DOI: 10.1111/jbg.12107     Document Type: Article
Times cited : (8)

References (35)
  • 1
    • 65149103048 scopus 로고    scopus 로고
    • Constructing genomic maps of positive selection in humans: where do we go from here?
    • Akey J.M. (2009) Constructing genomic maps of positive selection in humans: where do we go from here? Genome Res., 19, 711-722.
    • (2009) Genome Res. , vol.19 , pp. 711-722
    • Akey, J.M.1
  • 4
    • 13444269543 scopus 로고    scopus 로고
    • Haploview: analysis and visualization of LD and haplotype maps
    • Barrett J.C., Fry B., Maller J., Daly M.J. (2005) Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics, 21, 263-265.
    • (2005) Bioinformatics , vol.21 , pp. 263-265
    • Barrett, J.C.1    Fry, B.2    Maller, J.3    Daly, M.J.4
  • 6
    • 3242891359 scopus 로고    scopus 로고
    • Using the Map Viewer to Explore Genomes
    • J. McEntyre, J. Ostell (eds), National Center for Biotechnology Information (US), Bethesda (MD) - Chapter 20 (available from
    • Dombrowski S.M., Maglott D. (2002) Using the Map Viewer to Explore Genomes. In: J. McEntyre, J. Ostell (eds), The NCBI Handbook [Internet]. National Center for Biotechnology Information (US), Bethesda (MD), pp. 1-9. Chapter 20 (available from: http://www.ncbi.nlm.nih.gov/books/NBK21089/).
    • (2002) The NCBI Handbook [Internet] , pp. 1-9
    • Dombrowski, S.M.1    Maglott, D.2
  • 9
    • 66249122107 scopus 로고    scopus 로고
    • Mapping genes for complex traits in domestic animals and their use in breeding programmes
    • Goddard M.E., Hayes B.J. (2009) Mapping genes for complex traits in domestic animals and their use in breeding programmes. Nat. Rev. Genet., 10, 381-391.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 381-391
    • Goddard, M.E.1    Hayes, B.J.2
  • 10
    • 33646226097 scopus 로고
    • Linkage disequilibrium in finite populations
    • Hill W.G., Robertson A. (1986) Linkage disequilibrium in finite populations. Theor. Appl. Genet., 38, 226-231.
    • (1986) Theor. Appl. Genet. , vol.38 , pp. 226-231
    • Hill, W.G.1    Robertson, A.2
  • 11
    • 84864499787 scopus 로고    scopus 로고
    • Effects of polymorphisms in the porcine microRNA miR-1 locus on muscle fiber type composition and miR-1 expression
    • Hong J.S., Noh S.H., Lee J.S., Kim J.M., Hong K.C., Lee Y.S. (2012) Effects of polymorphisms in the porcine microRNA miR-1 locus on muscle fiber type composition and miR-1 expression. Gene, 506, 211-216.
    • (2012) Gene , vol.506 , pp. 211-216
    • Hong, J.S.1    Noh, S.H.2    Lee, J.S.3    Kim, J.M.4    Hong, K.C.5    Lee, Y.S.6
  • 12
    • 84897377942 scopus 로고    scopus 로고
    • Selection for complex traits leaves little or no classic signatures of selection
    • Kemper K.E., Saxton S.J., Bolormaa S., Hayes B.J., Goddard M.E. (2014) Selection for complex traits leaves little or no classic signatures of selection. BMC Genom., 15, 246.
    • (2014) BMC Genom. , vol.15 , pp. 246
    • Kemper, K.E.1    Saxton, S.J.2    Bolormaa, S.3    Hayes, B.J.4    Goddard, M.E.5
  • 13
    • 70349291078 scopus 로고    scopus 로고
    • Multidimensional scaling using majorization: SMACOF in R
    • de Leeuw J., Mair P. (2009) Multidimensional scaling using majorization: SMACOF in R. J. Stat. Softw., 31, 1-30.
    • (2009) J. Stat. Softw. , vol.31 , pp. 1-30
    • de Leeuw, J.1    Mair, P.2
  • 16
    • 33748807182 scopus 로고    scopus 로고
    • Quantitative trait loci associated with AutoFOM grading characteristics, carcass cuts and chemical body composition during growth of Sus scrofa
    • Mohrmann M., Roehe R., Knap P.W., Looft H., Plastow G.S., Kalm E. (2006) Quantitative trait loci associated with AutoFOM grading characteristics, carcass cuts and chemical body composition during growth of Sus scrofa. Anim. Genet., 37, 435-443.
    • (2006) Anim. Genet. , vol.37 , pp. 435-443
    • Mohrmann, M.1    Roehe, R.2    Knap, P.W.3    Looft, H.4    Plastow, G.S.5    Kalm, E.6
  • 17
    • 20544447886 scopus 로고    scopus 로고
    • Linkage disequilibrium for different scales and applications
    • Mueller J.C. (2004) Linkage disequilibrium for different scales and applications. Brief Bioinform., 5, 355-364.
    • (2004) Brief Bioinform. , vol.5 , pp. 355-364
    • Mueller, J.C.1
  • 18
    • 29444452921 scopus 로고    scopus 로고
    • Molecular signatures of natural selection
    • Nielsen R. (2005) Molecular signatures of natural selection. Annu. Rev. Genet., 39, 197-218.
    • (2005) Annu. Rev. Genet. , vol.39 , pp. 197-218
    • Nielsen, R.1
  • 19
    • 33846006923 scopus 로고    scopus 로고
    • Population structure and eigenanalysis
    • Patterson N., Price A., Reich D. (2006) Population structure and eigenanalysis. PLoS Genet., 2, e190.
    • (2006) PLoS Genet. , vol.2 , pp. e190
    • Patterson, N.1    Price, A.2    Reich, D.3
  • 20
    • 0034977045 scopus 로고    scopus 로고
    • Linkage disequilibrium in humans: models and data
    • Pritchard J.K., Przeworski M. (2001) Linkage disequilibrium in humans: models and data. Am. J. Hum. Genet., 69, 1-14.
    • (2001) Am. J. Hum. Genet. , vol.69 , pp. 1-14
    • Pritchard, J.K.1    Przeworski, M.2
  • 26
    • 84856243023 scopus 로고    scopus 로고
    • Joint QTL analysis of three connected F2-crosses in pigs
    • Rückert C., Bennewitz J. (2010) Joint QTL analysis of three connected F2-crosses in pigs. Genet. Sel. Evol., 42, 40.
    • (2010) Genet. Sel. Evol. , vol.42 , pp. 40
    • Rückert, C.1    Bennewitz, J.2
  • 28
    • 33644974019 scopus 로고    scopus 로고
    • A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase
    • Scheet P., Stephens M. (2006) A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am. J. Hum. Genet., 78, 629-644.
    • (2006) Am. J. Hum. Genet. , vol.78 , pp. 629-644
    • Scheet, P.1    Stephens, M.2
  • 29
    • 17444402038 scopus 로고    scopus 로고
    • A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphism
    • Schmid K.J., Ramos-Onsins S., Ringys-Beckstein H., Weisshaar B., Mitchell-Olds T. (2005) A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphism. Genetics, 169, 1601-1615.
    • (2005) Genetics , vol.169 , pp. 1601-1615
    • Schmid, K.J.1    Ramos-Onsins, S.2    Ringys-Beckstein, H.3    Weisshaar, B.4    Mitchell-Olds, T.5
  • 31
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey J.D., Tibshirani R. (2003) Statistical significance for genomewide studies. Proc. Nat. Acad. Sci., 100, 9440-9445.
    • (2003) Proc. Nat. Acad. Sci. , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 32
    • 84898884906 scopus 로고    scopus 로고
    • Genome-wide association analysis for growth, muscularity and meat quality in Piétrain pigs
    • Stratz P., Wellmann R., Preuss S., Wimmers K., Bennewitz J. (2014) Genome-wide association analysis for growth, muscularity and meat quality in Piétrain pigs. Anim. Genet., 45, 350-356.
    • (2014) Anim. Genet. , vol.45 , pp. 350-356
    • Stratz, P.1    Wellmann, R.2    Preuss, S.3    Wimmers, K.4    Bennewitz, J.5
  • 33
    • 79955587949 scopus 로고    scopus 로고
    • Extent of linkage disequilibrium and effective population size in Finnish Landrace and Finnish Yorkshire pig breeds
    • Uimari P., Tapio M. (2011) Extent of linkage disequilibrium and effective population size in Finnish Landrace and Finnish Yorkshire pig breeds. J. Anim. Sci., 89, 609-614.
    • (2011) J. Anim. Sci. , vol.89 , pp. 609-614
    • Uimari, P.1    Tapio, M.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.