Joint QTL analysis of three connected F2-crosses in pigs

Genetics Selection Evolution

Volumn 42, Issue 1, 2010, Pages

  Rückert, Christine ^a   Bennewitz, Jörn ^a  

^a UNIVERSITY OF HOHENHEIM   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ALLELE; CHROMOSOME; COMPUTER SIMULATION; DEVELOPMENTAL BIOLOGY; HYBRID; LIVESTOCK; PIG; POPULATION STRUCTURE; REPRODUCTIVE BEHAVIOR;

SUIDAE; SUS; SUS SCROFA;

ANIMAL; ARTICLE; BIOLOGICAL MODEL; CHROMOSOME; CHROMOSOME MAP; CROSS BREEDING; FEMALE; GENETIC LINKAGE; GENETICS; GENOME IMPRINTING; MALE; MEAT; PHENOTYPE; QUANTITATIVE TRAIT; QUANTITATIVE TRAIT LOCUS; SWINE; WEIGHT GAIN;

ANIMALS; CHROMOSOME MAPPING; CHROMOSOMES, MAMMALIAN; CROSSES, GENETIC; FEMALE; GENOMIC IMPRINTING; LOD SCORE; MALE; MEAT; MODELS, GENETIC; PHENOTYPE; QUANTITATIVE TRAIT LOCI; QUANTITATIVE TRAIT, HERITABLE; SUS SCROFA; WEIGHT GAIN;

EID: 84856243023     PISSN: 0999193X     EISSN: 12979686     Source Type: Journal    
DOI: 10.1186/1297-9686-42-40     Document Type: Article

References (31)

1. A QTL resource and comparison tool for pigs: PigQTLDB. Hu ZL, Dracheva S, Jang W, Maglott D, Bastiaansen J, Rothschild MF, Reecy JM, Mamm Genome 2005 15 792 800 10.1007/s00335-005-0060-9
2. Combined analysis of data from two granddaughter designs: A simple strategy for QTL confirmation and increasing experimental power in dairy cattle. Bennewitz J, Reinsch N, Grohs C, Levéziel H, Malafosse A, Thomsen H, Xu N, Looft C, Kühn C, Brockmann GA, Schwerin M, Weinmann C, Hiendleder S, Erhardt G, Medjugorac I, Russ I, Förster M, Brenig B, Reinhardt F, Reents R, Averdunk G, Blümel J, Bolchard D, Kalm E, Genet Sel Evol 2003 35 319 338 10.1186/1297-9686-35-3-319 12729552 (Pubitemid 36631935)
3. Combined analyses of data from quantitative trait loci mapping studies: Chromosome 4 effects on porcine growth and fatness. Walling GA, Visscher PM, Andersson L, Rothschild MF, Wang L, Moser G, Groenen MAM, Bidanel J.-P, Cepica S, Archibald AL, Geldermann H, De Koning DJ, Milan D, Haley CS, Genetics 2000 155 1369 1378 10880495 (Pubitemid 30463444)
4. Mapping quantitative trait loci in crosses between outbred lines using least squares. Haley CS, Knott SA, Elsen JM, Genetics 1994 136 1195 1207 8005424 (Pubitemid 24085665)
5. Joint analysis of two breed cross populations in pigs to improve detection and characterization of quantitative trait loci. Kim JJ, Rothschild MF, Beever J, Rodriguez-Zas S, Dekkers JCM, J Anim Sci 2005 83 1229 1240 15890800
6. Large-scale, multibreed, multitrait analyses of quantitative trait loci experiments: The case of porcine X chromosome. Pérez-Enciso M, Mercadé A, Bidanel JP, Geldermann H, Cepica S, Bartenschlager H, Varona L, Milan D, Folch JM, J Anim Sci 2005 83 2289 2296 16160038
7. Combining data from multiple inbred line crosses improves the power and resolution of quantitative trait loci mapping. Li R, Lyons MA, Wittenburg H, Paigen B, Churchill GA, Genetics 2005 169 1699 1709 10.1534/genetics.104.033993 15654110 (Pubitemid 40547476)
8. Mapping quantitative trait loci in plant breeding populations: Use of parental haplotype sharing. Jansen RC, Jannink JL, Beavis WD, Crop Science 2003 43 829 834 10.2135/cropsci2003.0829 (Pubitemid 36530944)
9. 2 families generated from Pietrain, Meishan and Wild boar crosses. Geldermann H, Müller E, Moser G, Reiner G, Bartenschlager H, Cepica S, Stratil A, Kuryl J, Moran C, Danoli R, Brunsch C, J Anim Breed Genet 2003 120 363 393 10.1046/j.0931-2668.2003.00408.x (Pubitemid 38105786)
10. A general mixture model approach for mapping QTL from diverse cross designs involving multiple inbred lines. Liu Y, Zeng ZB, Genet Res 2000 75 345 355 10.1017/S0016672300004493 10893870 (Pubitemid 30398389)
11. Trait values of growth, carcass and meat quality in Wild Boar, Meishan and Pietrain pigs as well as their crossbred generations. Müller E, Moser G, Bartenschlager H, Geldermann H, J Anim Breed Genet 2000 117 189 202 10.1046/j.1439-0388.2000.00239.x
12. Documentation for CRIMAP (Version 2.4). Green P, Falls K, Crooks S, Washington University, School of Medicine, St. Louis 1990
13. A multiple-species, multiple-project database for genotypes at codominant loci. Reinsch N, J Anim Breed Genet 1999 116 425 435 10.1046/j.1439-0388.1999. 00217.x (Pubitemid 129639469)
14. 2 families. Mantey C, Brockmann GA, Kalm E, Reinsch N, J Heredity 2005 96 329 338 10.1093/jhered/esi044 (Pubitemid 41399393)
15. A quick method for computing approximate threshold for quantitative trait loci detection. Piepho HP, Genetics 2001 157 425 432 11139522
16. Genetics and Analysis of Quantitative Traits. Lynch M, Walsh B, Sinauer Associates, INC 1998
17. Confidence intervals in QTL mapping by bootstrapping. Visscher PM, Thompson R, Haley CS, Genetics 1996 143 1013 1020 8725246 (Pubitemid 26001097)
18. Mapping of multiple quantitative trait loci by simple regression in half-sib designs. De Koning DJ, Schulman NF, Elo K, Moisio S, Kinos R, Vilkki J, Maki-Tanila A, J Anim Sci 2001 79 616 622 11263821 (Pubitemid 33616424)
19. Large upward bias in estimation of locus-specific effects from genomewide scans. Göring HHH, Terwilliger JD, Blangero J, Am J Hum Genet 2001 69 1357 1369 10.1086/324471 11593451 (Pubitemid 33124216)
20. Genome-wide scan for body composition in pigs reveals important role of imprinting. de Koning DJ, Rattink AP, Harlizius B, van Arendonk JAM, Brascamp EW, Groenen MAM, Proc Natl Acad Sci USA 2000 97 7947 7950 10.1073/pnas.140216397 10859367 (Pubitemid 30460753)
21. An imprinted QTL with major effect on muscle mass and fat deposition maps to the IGF2 locus in pigs. Nezer C, Moreau L, Brouwers B, Coppieters W, Detillieux J, Hanset R, Karim L, Kvasz A, Leroy P, Georges M, Nat Genet 1999 21 155 156 10.1038/5935 9988262 (Pubitemid 29070356)
22. A regulatory mutation in IGF2 causes a major QTL effect on muscle growth in the pig. Van Laere AS, Nguyen M, Braunschweig M, Neze C, Collette C, Moreau L, Archibald AL, Haley CS, Buys N, Tally M, Andersson G, Georges M, Andersson L, Nature 2003 425 832 836 10.1038/nature02064 14574411 (Pubitemid 37351466)
23. On the detection of imprinted quantitative trait loci in line crosses: Effect of linkage disequilibrium. Sandor C, Georges M, Genetics 2008 180 1167 1175 10.1534/genetics.108.092551 18780735
24. On the detection of imprinted quantitative trait loci in experimental crosses of outbred species. de Koning DJ, Bovenhuis H, van Arendonk JAM, Genetics 2002 161 931 938 12072486 (Pubitemid 34705430)
25. Parent-of-origin effects cause genetic variation in pig performance traits. Neugebauer N, Luther H, Reinsch N, Animal 2010 4 672 681 10.1017/S1751731109991625
26. The distribution of QTL additive and dominance effects in porcine F2 crosses. Bennewitz J, Meuwissen THE, J Anim Breed Genet 2010 127 171 179 10.1111/j.1439-0388.2009.00847.x 20536634
27. Theoretical basis for separation of multiple linked gene effects in mapping quantitative trait loci. Zeng ZB, Proc Nat Acad Sci USA 1993 90 10972 10976 10.1073/pnas.90.23.10972 8248199 (Pubitemid 23354350)
28. Precision mapping of quantitative trait loci. Zeng ZB, Genetics 1994 136 1457 1468 8013918
29. High resolution of quantitative traits into multiple loci via interval Mapping. Jansen RC, Stam P, Genetics 1994 136 1447 1455 8013917 (Pubitemid 24097871)
30. Detecting dominant QTL with variance component analysis in simulated pedigrees. Rowe SJ, Pong-Wong R, Haley CH, Knott SA, de Koning DJ, Genet Res 2008 90 363 374 10.1017/S0016672308009336 18840310
31. Detecting parent of origin and dominant QTL in a two-generation commercial poultry pedigree using variance component methodology. Rowe SJ, Pong-Wong R, Haley CH, Knott SA, de Koning DJ, Genet Sel Evol 2009 41 6 10.1186/1297-9686-41-6 19284678