메뉴 건너뛰기




Volumn 9, Issue 11, 2014, Pages

High-throughput sequencing and copy number variation detection using formalin fixed embedded tissue in metastatic gastric cancer

Author keywords

[No Author keywords available]

Indexed keywords

ADULT; ANALYTIC METHOD; APC GENE; ARTICLE; CANCER TISSUE; CCNE1 GENE; CDKN2A GENE; CONTROLLED STUDY; COPY NUMBER VARIATION; EGFR GENE; FEMALE; FLUORESCENCE IN SITU HYBRIDIZATION; FORMALIN FIXED PARAFFIN EMBEDDED TISSUE; GENE AMPLIFICATION; HER2 GENE; HIGH THROUGHPUT SEQUENCING; HUMAN; HUMAN TISSUE; IMMUNOHISTOCHEMISTRY; MAJOR CLINICAL STUDY; MALE; METASTASIS; ONCOGENE K RAS; ONCOGENE MYC; PIK3CA GENE; PROTEIN EXPRESSION; REAL TIME POLYMERASE CHAIN REACTION; SANGER SEQUENCING; SMAD4 GENE; SMO GENE; SOMATIC MUTATION; STK11 GENE; STOMACH CANCER; TP53 GENE; TUMOR GENE; AGED; ALLELE; AMINO ACID SUBSTITUTION; CANCER STAGING; FOLLOW UP; GENETICS; METABOLISM; MIDDLE AGED; MUTATION RATE; PATHOLOGY; REPRODUCIBILITY; STOMACH TUMOR;

EID: 84910630641     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0111693     Document Type: Article
Times cited : (33)

References (32)
  • 2
    • 84862059834 scopus 로고    scopus 로고
    • Gastric cancer epidemiology in Korea
    • Shin A, Kim J, Park S (2011) Gastric cancer epidemiology in Korea. J Gastric Cancer 11: 135-140.
    • (2011) J Gastric Cancer , vol.11 , pp. 135-140
    • Shin, A.1    Kim, J.2    Park, S.3
  • 4
    • 84871645916 scopus 로고    scopus 로고
    • Molecular targeted therapies in advanced gastric cancer: Does tumor histology matter?
    • Wong H, Yau T (2013) Molecular targeted therapies in advanced gastric cancer: does tumor histology matter? Therap Adv Gastroenterol 6: 15-31.
    • (2013) Therap Adv Gastroenterol , vol.6 , pp. 15-31
    • Wong, H.1    Yau, T.2
  • 5
    • 84875717208 scopus 로고    scopus 로고
    • Molecular profiling of gastric cancer: Toward personalized cancer medicine
    • Nadauld LD, Ford JM (2013) Molecular profiling of gastric cancer: toward personalized cancer medicine. J Clin Oncol 31: 838-839.
    • (2013) J Clin Oncol , vol.31 , pp. 838-839
    • Nadauld, L.D.1    Ford, J.M.2
  • 6
    • 72849144434 scopus 로고    scopus 로고
    • Sequencing technologies - The next generation
    • Metzker ML (2010) Sequencing technologies - the next generation. Nat Rev Genet 11: 31-46.
    • (2010) Nat Rev Genet , vol.11 , pp. 31-46
    • Metzker, M.L.1
  • 8
    • 79960597679 scopus 로고    scopus 로고
    • An integrated semiconductor device enabling non-optical genome sequencing
    • Rothberg JM, Hinz W, Rearick TM, Schultz J, Mileski W, et al. (2011) An integrated semiconductor device enabling non-optical genome sequencing. Nature 475: 348-352.
    • (2011) Nature , vol.475 , pp. 348-352
    • Rothberg, J.M.1    Hinz, W.2    Rearick, T.M.3    Schultz, J.4    Mileski, W.5
  • 9
    • 84882289495 scopus 로고    scopus 로고
    • Clinical validation of a next-generation sequencing screen for mutational hotspots in 46 cancer-related genes
    • Singh RR, Patel KP, Routbort MJ, Reddy NG, Barkoh BA, et al. (2013) Clinical validation of a next-generation sequencing screen for mutational hotspots in 46 cancer-related genes. J Mol Diagn 15: 607-622.
    • (2013) J Mol Diagn , vol.15 , pp. 607-622
    • Singh, R.R.1    Patel, K.P.2    Routbort, M.J.3    Reddy, N.G.4    Barkoh, B.A.5
  • 10
    • 84874533657 scopus 로고    scopus 로고
    • Combining highly multiplexed PCR with semiconductor-based sequencing for rapid cancer genotyping
    • Beadling C, Neff TL, Heinrich MC, Rhodes K, Thornton M, et al. (2013) Combining highly multiplexed PCR with semiconductor-based sequencing for rapid cancer genotyping. J Mol Diagn 15: 171-176.
    • (2013) J Mol Diagn , vol.15 , pp. 171-176
    • Beadling, C.1    Neff, T.L.2    Heinrich, M.C.3    Rhodes, K.4    Thornton, M.5
  • 11
    • 84877278637 scopus 로고    scopus 로고
    • Implementing personalized cancer genomics in clinical trials
    • Simon R, Roychowdhury S (2013) Implementing personalized cancer genomics in clinical trials. Nat Rev Drug Discov 12: 358-369.
    • (2013) Nat Rev Drug Discov , vol.12 , pp. 358-369
    • Simon, R.1    Roychowdhury, S.2
  • 12
    • 0037388691 scopus 로고    scopus 로고
    • A comprehensive search for DNA amplification in lung cancer identifies inhibitors of apoptosis cIAP1 and cIAP2 as candidate oncogenes
    • Dai Z, Zhu WG, Morrison CD, Brena RM, Smiraglia DJ, et al. (2003) A comprehensive search for DNA amplification in lung cancer identifies inhibitors of apoptosis cIAP1 and cIAP2 as candidate oncogenes. Hum Mol Genet 12: 791-801.
    • (2003) Hum Mol Genet , vol.12 , pp. 791-801
    • Dai, Z.1    Zhu, W.G.2    Morrison, C.D.3    Brena, R.M.4    Smiraglia, D.J.5
  • 13
    • 84880315917 scopus 로고    scopus 로고
    • Comprehensive genomic meta-analysis identifies intra-tumoural stroma as a predictor of survival in patients with gastric cancer
    • Wu Y, Grabsch H, Ivanova T, Tan IB, Murray J, et al. (2013) Comprehensive genomic meta-analysis identifies intra-tumoural stroma as a predictor of survival in patients with gastric cancer. Gut 62: 1100-1111.
    • (2013) Gut , vol.62 , pp. 1100-1111
    • Wu, Y.1    Grabsch, H.2    Ivanova, T.3    Tan, I.B.4    Murray, J.5
  • 14
    • 84862777035 scopus 로고    scopus 로고
    • A comprehensive survey of genomic alterations in gastric cancer reveals systematic patterns of molecular exclusivity and co-occurrence among distinct therapeutic targets
    • Deng N, Goh LK, Wang H, Das K, Tao J, et al. (2012) A comprehensive survey of genomic alterations in gastric cancer reveals systematic patterns of molecular exclusivity and co-occurrence among distinct therapeutic targets. Gut 61: 673-684.
    • (2012) Gut , vol.61 , pp. 673-684
    • Deng, N.1    Goh, L.K.2    Wang, H.3    Das, K.4    Tao, J.5
  • 15
    • 40449100030 scopus 로고    scopus 로고
    • Direct multiplexed measurement of gene expression with color-coded probe pairs
    • Geiss GK, Bumgarner RE, Birditt B, Dahl T, Dowidar N, et al. (2008) Direct multiplexed measurement of gene expression with color-coded probe pairs. Nat Biotechnol 26: 317-325.
    • (2008) Nat Biotechnol , vol.26 , pp. 317-325
    • Geiss, G.K.1    Bumgarner, R.E.2    Birditt, B.3    Dahl, T.4    Dowidar, N.5
  • 16
    • 77949685040 scopus 로고    scopus 로고
    • Developing mRNA-based biomarkers from formalin-fixed paraffin-embedded tissue
    • Austin Tanney RDK (2010) Developing mRNA-based biomarkers from formalin-fixed paraffin-embedded tissue. Future Medicine 7: 205-211.
    • (2010) Future Medicine , vol.7 , pp. 205-211
    • Austin Tanney, R.D.K.1
  • 17
    • 84893514989 scopus 로고    scopus 로고
    • Exome sequencing identifies early gastric carcinoma as an early stage of advanced gastric cancer
    • Kang G, Hwang WC, Do IG, Wang K, Kang SY, et al. (2013) Exome sequencing identifies early gastric carcinoma as an early stage of advanced gastric cancer. PLoS One 8: e82770.
    • (2013) PLoS One , vol.8
    • Kang, G.1    Hwang, W.C.2    Do, I.G.3    Wang, K.4    Kang, S.Y.5
  • 18
    • 84877033918 scopus 로고    scopus 로고
    • Heterogeneity of ERBB2 in gastric carcinomas: A study of tissue microarray and matched primary and metastatic carcinomas
    • Cho EY, Park K, Do I, Cho J, Kim J, et al. (2013) Heterogeneity of ERBB2 in gastric carcinomas: a study of tissue microarray and matched primary and metastatic carcinomas. Mod Pathol 26: 677-684.
    • (2013) Mod Pathol , vol.26 , pp. 677-684
    • Cho, E.Y.1    Park, K.2    Do, I.3    Cho, J.4    Kim, J.5
  • 19
    • 84863650635 scopus 로고    scopus 로고
    • Comparison of four immunohistochemical tests and FISH for measuring HER2 expression in gastric carcinomas
    • Cho EY, Srivastava A, Park K, Kim J, Lee MH, et al. (2012) Comparison of four immunohistochemical tests and FISH for measuring HER2 expression in gastric carcinomas. Pathology 44: 216-220.
    • (2012) Pathology , vol.44 , pp. 216-220
    • Cho, E.Y.1    Srivastava, A.2    Park, K.3    Kim, J.4    Lee, M.H.5
  • 21
    • 84889095358 scopus 로고    scopus 로고
    • MET overexpression assessed by new interpretation method predicts gene amplification and poor survival in advanced gastric carcinomas
    • Ha SY, Lee J, Kang SY, Do IG, Ahn S, et al. (2013) MET overexpression assessed by new interpretation method predicts gene amplification and poor survival in advanced gastric carcinomas. Mod Pathol 26: 1632-1641.
    • (2013) Mod Pathol , vol.26 , pp. 1632-1641
    • Ha, S.Y.1    Lee, J.2    Kang, S.Y.3    Do, I.G.4    Ahn, S.5
  • 22
    • 84555202718 scopus 로고    scopus 로고
    • Genetic activation of the MET pathway and prognosis of patients with high-risk, radically resected gastric cancer
    • Graziano F, Galluccio N, Lorenzini P, Ruzzo A, Canestrari E, et al. (2011) Genetic Activation of the MET Pathway and Prognosis of Patients With High-Risk, Radically Resected Gastric Cancer. J Clin Oncol.
    • (2011) J Clin Oncol.
    • Graziano, F.1    Galluccio, N.2    Lorenzini, P.3    Ruzzo, A.4    Canestrari, E.5
  • 24
    • 82255183148 scopus 로고    scopus 로고
    • Exome sequencing identifies frequent mutation of ARID1A in molecular subtypes of gastric cancer
    • Wang K, Kan J, Yuen ST, Shi ST, Chu KM, et al. (2011) Exome sequencing identifies frequent mutation of ARID1A in molecular subtypes of gastric cancer. Nat Genet 43: 1219-1223.
    • (2011) Nat Genet , vol.43 , pp. 1219-1223
    • Wang, K.1    Kan, J.2    Yuen, S.T.3    Shi, S.T.4    Chu, K.M.5
  • 25
    • 84860327480 scopus 로고    scopus 로고
    • Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes
    • Zang ZJ, Cutcutache I, Poon SL, Zhang SL, McPherson JR, et al. (2012) Exome sequencing of gastric adenocarcinoma identifies recurrent somatic mutations in cell adhesion and chromatin remodeling genes. Nat Genet 44: 570-574.
    • (2012) Nat Genet , vol.44 , pp. 570-574
    • Zang, Z.J.1    Cutcutache, I.2    Poon, S.L.3    Zhang, S.L.4    McPherson, J.R.5
  • 26
    • 84862502170 scopus 로고    scopus 로고
    • High-throughput mutation profiling identifies frequent somatic mutations in advanced gastric adenocarcinoma
    • Lee J, van Hummelen P, Go C, Palescandolo E, Jang J, et al. (2012) High-throughput mutation profiling identifies frequent somatic mutations in advanced gastric adenocarcinoma. PLoS One 7: e38892.
    • (2012) PLoS One , vol.7
    • Lee, J.1    Van Hummelen, P.2    Go, C.3    Palescandolo, E.4    Jang, J.5
  • 27
    • 84873918443 scopus 로고    scopus 로고
    • Activating HER2 mutations in HER2 gene amplification negative breast cancer
    • Bose R, Kavuri SM, Searleman AC, Shen W, Shen D, et al. (2013) Activating HER2 mutations in HER2 gene amplification negative breast cancer. Cancer Discov 3: 224-237.
    • (2013) Cancer Discov , vol.3 , pp. 224-237
    • Bose, R.1    Kavuri, S.M.2    Searleman, A.C.3    Shen, W.4    Shen, D.5
  • 28
    • 84904602272 scopus 로고    scopus 로고
    • Personalized targeted therapy in advanced non-small cell lung cancer
    • Ma PC (2012) Personalized targeted therapy in advanced non-small cell lung cancer. Cleve Clin J Med 79 Electronic Suppl 1: eS56-60.
    • (2012) Cleve Clin J Med , vol.79 , pp. eS56-60
    • Ma, P.C.1
  • 29
    • 77956262693 scopus 로고    scopus 로고
    • Trastuzumab in combination with chemotherapy versus chemotherapy alone for treatment of HER2-positive advanced gastric or gastro-oesophageal junction cancer (ToGA): A phase 3, open-label, randomised controlled trial
    • Bang YJ, Van Cutsem E, Feyereislova A, Chung HC, Shen L, et al. (2010) Trastuzumab in combination with chemotherapy versus chemotherapy alone for treatment of HER2-positive advanced gastric or gastro-oesophageal junction cancer (ToGA): a phase 3, open-label, randomised controlled trial. Lancet 376: 687-697.
    • (2010) Lancet , vol.376 , pp. 687-697
    • Bang, Y.J.1    Van Cutsem, E.2    Feyereislova, A.3    Chung, H.C.4    Shen, L.5
  • 30
    • 84886299562 scopus 로고    scopus 로고
    • A subset of gastric cancers with EGFR amplification and overexpression respond to cetuximab therapy
    • Zhang L, Yang J, Cai J, Song X, Deng J, et al. (2013) A subset of gastric cancers with EGFR amplification and overexpression respond to cetuximab therapy. Sci Rep 3: 2992.
    • (2013) Sci Rep , vol.3 , pp. 2992
    • Zhang, L.1    Yang, J.2    Cai, J.3    Song, X.4    Deng, J.5
  • 31
    • 84907270779 scopus 로고    scopus 로고
    • Comprehensive molecular characterization of gastric adenocarcinoma
    • Network TCGAR (2014) Comprehensive molecular characterization of gastric adenocarcinoma. Nature doi: 10.1038/nature13480.
    • (2014) Nature
    • Network, T.C.G.A.R.1
  • 32
    • 84875185177 scopus 로고    scopus 로고
    • Comparative studies of copy number variation detection methods for next-generation sequencing technologies
    • Duan J, Zhang JG, Deng HW, Wang YP (2013) Comparative studies of copy number variation detection methods for next-generation sequencing technologies. PLoS One 8: e59128.
    • (2013) PLoS One , vol.8
    • Duan, J.1    Zhang, J.G.2    Deng, H.W.3    Wang, Y.P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.