-
1
-
-
85054258666
-
Lactic acid bacteria: Clasification and physiology
-
In: Salminen S, von Wright A OA, editor. New York, NY: Marcel Dekker Inc.
-
Axelsson L (2004) Lactic acid bacteria: clasification and physiology. In: Salminen S, von Wright A OA, editor. Lactic acid bacteria macrobiological and funtional Aspects. New York, NY: Marcel Dekker Inc. pp.1-66.
-
(2004)
Lactic Acid Bacteria Macrobiological and Funtional Aspects
, pp. 1-66
-
-
Axelsson, L.1
-
2
-
-
0030902941
-
Lactic acid bacteria of foods and their current taxonomy
-
Stiles ME, Holzapfel WH (1997) Lactic acid bacteria of foods and their current taxonomy. Int J Food Microbiol 36: 1-29. Available: http://www.ncbi.nlm.nih. gov/pubmed/9168311.
-
(1997)
Int J Food Microbiol
, vol.36
, pp. 1-29
-
-
Stiles, M.E.1
Holzapfel, W.H.2
-
3
-
-
0002153991
-
Probiotics for humans
-
In: Fuller R . London, editor. Chapman and Hall.
-
Goldin BR, Gorbach S (1992) Probiotics for humans. In: Fuller R . London, editor. Probiotics: the scientific basis. Chapman and Hall. pp.355-372.
-
(1992)
Probiotics: The Scientific Basis
, pp. 355-372
-
-
Goldin, B.R.1
Gorbach, S.2
-
4
-
-
0002668543
-
Industrial use and production of lactic acid bacteria
-
In: Salminen S WA, editor. New York, NY: Marcel Dekker Inc.
-
Mayra-Makinen A BM (1998) Industrial use and production of lactic acid bacteria. In: Salminen S WA, editor. Lactic acid bacteria-microbiology and functional aspects. New York, NY: Marcel Dekker Inc. pp.73-102.
-
(1998)
Lactic Acid Bacteria-microbiology and Functional Aspects
, pp. 73-102
-
-
Mayra-Makinen, A.B.M.1
-
5
-
-
84867018919
-
Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation
-
Accessed 2012 Nov 8
-
Broadbent JR, Neeno-Eckwall EC, Stahl B, Tandee K, Cai H, et al. (2012) Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation. BMC Genomics 13: 533. Available: http:// www.ncbi.nlm.nih.gov/pubmed/23035691. Accessed 2012 Nov 8.
-
(2012)
BMC Genomics
, vol.13
, pp. 533
-
-
Broadbent, J.R.1
Neeno-Eckwall, E.C.2
Stahl, B.3
Tandee, K.4
Cai, H.5
-
6
-
-
84892788440
-
Constraint-based models predict metabolic and associated cellular functions
-
Accessed 2014 Jan 21
-
Bordbar A, Monk JM, King Z, Palsson BO (2014) Constraint-based models predict metabolic and associated cellular functions. Nat Rev Genet 15: 107-120. Available: http://www.ncbi.nlm.nih.gov/pubmed/24430943. Accessed 2014 Jan 21.
-
(2014)
Nat Rev Genet
, vol.15
, pp. 107-120
-
-
Bordbar, A.1
Monk, J.M.2
King, Z.3
Palsson, B.O.4
-
7
-
-
84858439602
-
Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods
-
Lewis NE, Nagarajan H, Palsson BO (2013) Constraining the metabolic genotype-phenotype relationship using a phylogeny of in silico methods. Nat Rev Microbiol 10: 291-305. doi:10.1038/nrmicro2737.Constraining.
-
(2013)
Nat Rev Microbiol
, vol.10
, pp. 291-305
-
-
Lewis, N.E.1
Nagarajan, H.2
Palsson, B.O.3
-
8
-
-
84866128045
-
Shrinking the metabolic solution space using experimental datasets
-
Accessed 2014 Mar 10
-
Reed JL (2012) Shrinking the metabolic solution space using experimental datasets. PLoS Comput Biol 8: e1002662. Available: http://www.pubmedcentral.nih.gov/ articlerender.fcgi?artid=3431291&tool=pmcentrez&rendertype=abstract. Accessed 2014 Mar 10.
-
(2012)
PLoS Comput Biol
, vol.8
, pp. e1002662
-
-
Reed, J.L.1
-
9
-
-
84869010163
-
Mathematical optimization applications in metabolic networks
-
Accessed 2014 Jan 27
-
Zomorrodi AR, Suthers PF, Ranganathan S, Maranas CD (2012) Mathematical optimization applications in metabolic networks. Metab Eng 14: 672-686. Available: http://www.ncbi.nlm.nih.gov/pubmed/23026121. Accessed 2014 Jan 27.
-
(2012)
Metab Eng
, vol.14
, pp. 672-686
-
-
Zomorrodi, A.R.1
Suthers, P.F.2
Ranganathan, S.3
Maranas, C.D.4
-
10
-
-
84875973063
-
The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum
-
Accessed 2014 Jan 29
-
Agren R, Liu L, Shoaie S, Vongsangnak W, Nookaew I, et al. (2013) The RAVEN toolbox and its use for generating a genome-scale metabolic model for Penicillium chrysogenum. Plos Comput Biol 9: e1002980. Available: http://www. pubmedcentral.nih.gov/articlerender.fcgi?artid=3605104&tool=pmcentrez& rendertype=abstract. Accessed 2014 Jan 29.
-
(2013)
Plos Comput Biol
, vol.9
, pp. e1002980
-
-
Agren, R.1
Liu, L.2
Shoaie, S.3
Vongsangnak, W.4
Nookaew, I.5
-
11
-
-
23944440242
-
Modeling Lactococcus lactis using a genomescale flux model
-
Accessed 2012 Nov 28
-
Oliveira AP,Nielsen J, Förster J (2005)Modeling Lactococcus lactis using a genomescale flux model. BMCMicrobiol 5: 39. Available: http://www.pubmedcentral.nih. gov/articlerender.fcgi?artid=1185544&tool=pmcentrez&rendertype=abstract. Accessed 2012 Nov 28.
-
(2005)
BMCMicrobiol
, vol.5
, pp. 39
-
-
Oliveira, A.P.1
Nielsen, J.2
Förster, J.3
-
12
-
-
84885376218
-
Genome-scale metabolic model for Lactococcus lactis MG1363 and its application to the analysis of flavor formation
-
Accessed 2014 Jul 17
-
Flahaut N a L, Wiersma A, van de Bunt B, Martens DE, Schaap PJ, et al. (2013) Genome-scale metabolic model for Lactococcus lactis MG1363 and its application to the analysis of flavor formation. Appl Microbiol Biotechnol 97: 8729-8739. Available: http://www.ncbi.nlm.nih.gov/pubmed/23974365. Accessed 2014 Jul 17.
-
(2013)
Appl Microbiol Biotechnol
, vol.97
, pp. 8729-8739
-
-
Flahaut, N.A.L.1
Wiersma, A.2
Van De Bunt, B.3
Martens, D.E.4
Schaap, P.J.5
-
13
-
-
33846015888
-
Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model
-
Accessed 2012 Nov 28
-
Teusink B, Wiersma A, Molenaar D, Francke C, de Vos WM, et al. (2006) Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model. J Biol Chem 281: 40041-40048. Available: http://www.ncbi.nlm.nih.gov/pubmed/17062565. Accessed 2012 Nov 28.
-
(2006)
J Biol Chem
, vol.281
, pp. 40041-40048
-
-
Teusink, B.1
Wiersma, A.2
Molenaar, D.3
Francke, C.4
De Vos, W.M.5
-
14
-
-
66249144433
-
Genome-scale model of Streptococcus thermophilus LMG18311 for metabolic comparison of lactic acid bacteria
-
Accessed 2012 Oct 30
-
Pastink MI, Teusink B, Hols P, Visser S, de Vos WM, et al. (2009) Genome-scale model of Streptococcus thermophilus LMG18311 for metabolic comparison of lactic acid bacteria. Appl Environ Microbiol 75: 3627-3633. Available: http:// www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2687286&tool=pmcentrez& rendertype=abstract. Accessed 2012 Oct 30.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 3627-3633
-
-
Pastink, M.I.1
Teusink, B.2
Hols, P.3
Visser, S.4
De Vos, W.M.5
-
15
-
-
79955718307
-
Exploring metabolic pathway reconstruction and genome-wide expression profiling in Lactobacillus reuteri to define functional probiotic features
-
Accessed 2012 Nov 7
-
Saulnier DM, Santos F, Roos S, Mistretta T-A, Spinler JK, et al. (2011) Exploring metabolic pathway reconstruction and genome-wide expression profiling in Lactobacillus reuteri to define functional probiotic features. PLoS One 6: e18783. Available: http://www.pubmedcentral.nih.gov/articlerender. fcgi?artid=3084715&tool=pmcentrez&rendertype=abstract. Accessed 2012 Nov 7.
-
(2011)
PLoS One
, vol.6
, pp. e18783
-
-
Saulnier, D.M.1
Santos, F.2
Roos, S.3
Mistretta, T.-A.4
Spinler, J.K.5
-
16
-
-
33750341148
-
Comparative genomics of the lactic acid bacteria
-
Makarova K, Slesarev A, Wolf Y, Sorokin A, Mirkin B, et al. (2006) Comparative genomics of the lactic acid bacteria. Proc Natl Acad Sci U S A 103: 15611-15616. Available: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2660350 &tool=pmcentrez&rendertype=abstract.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 15611-15616
-
-
Makarova, K.1
Slesarev, A.2
Wolf, Y.3
Sorokin, A.4
Mirkin, B.5
-
17
-
-
40549120596
-
The RAST Server: Rapid annotations using subsystems technology
-
Accessed 2012 Jul 13
-
Aziz RK, Bartels D, Best A a, DeJonghM, Disz T, et al. (2008) The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9: 75. Available: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2265698&tool= pmcentrez&rendertype=abstract. Accessed 2012 Jul 13.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
Dejongh, M.4
Disz, T.5
-
18
-
-
77956696072
-
Highthroughput generation, optimization and analysis of genome-scale metabolic models
-
Accessed 2012 Jul 16
-
Henry CS, DeJongh M, Best A a, Frybarger PM, Linsay B, et al. (2010) Highthroughput generation, optimization and analysis of genome-scale metabolic models. Nat Biotechnol 28: 977-982. Available: http://www.ncbi.nlm.nih.gov/ pubmed/20802497. Accessed 2012 Jul 16.
-
(2010)
Nat Biotechnol
, vol.28
, pp. 977-982
-
-
Henry, C.S.1
Dejongh, M.2
Best, A.A.3
Frybarger, P.M.4
Linsay, B.5
-
19
-
-
77955495197
-
Constraint-based model of Shewanella oneidensisMR-1 metabolism: A tool for data analysis and hypothesis generation
-
Accessed 2013 Mar 6
-
Pinchuk GE, Hill E a, Geydebrekht O V, De Ingeniis J, Zhang X, et al. (2010) Constraint-based model of Shewanella oneidensisMR-1 metabolism: a tool for data analysis and hypothesis generation. Plos Comput Biol 6: e1000822. Available: http://www.pubmedcentral.nih.gov/articlerender.fcgi?artid=2891590&tool= pmcentrez&rendertype=abstract. Accessed 2013 Mar 6.
-
(2010)
Plos Comput Biol
, vol.6
, pp. e1000822
-
-
Pinchuk, G.E.1
Hill, E.A.2
Geydebrekht, O.V.3
De Ingeniis, J.4
Zhang, X.5
-
20
-
-
33751226921
-
Systems approach to refining genome annotation
-
Reed JL, Patel TR, Chen KH, Joyce AR, Applebee MK, et al. (2006) Systems approach to refining genome annotation. Proc Natl Acad Sci U S A 103: 17480-17484. Available: http://www.pubmedcentral.nih.gov/articlerender. fcgi?artid=1859954&tool=pmcentrez&rendertype=abstract.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 17480-17484
-
-
Reed, J.L.1
Patel, T.R.2
Chen, K.H.3
Joyce, A.R.4
Applebee, M.K.5
-
21
-
-
77749320898
-
What is flux balance analysis
-
Orth JD, Palsson BØ (2011) What is flux balance analysis? Nat Biotechnol 28: 245-248. doi:10.1038/nbt.1614.
-
(2011)
Nat Biotechnol
, vol.28
, pp. 245-248
-
-
Orth, J.D.1
Palsson B.Ø.2
-
22
-
-
0038191082
-
Impaired growth rates in milk of Lactobacillus helveticus peptidase mutants can be overcome by use of amino acid supplements
-
Christensen JE, Steele JL (2003) Impaired growth rates in milk of Lactobacillus helveticus peptidase mutants can be overcome by use of amino acid supplements. J Bacteriol 185: 3297-3306. doi:10.1128/JB.185.11.3297.
-
(2003)
J Bacteriol
, vol.185
, pp. 3297-3306
-
-
Christensen, J.E.1
Steele, J.L.2
-
23
-
-
84859828896
-
Identification of functional differences in metabolic networks using comparative genomics and constraint-based models
-
Accessed 2012 Oct 29
-
Hamilton JJ, Reed JL (2012) Identification of functional differences in metabolic networks using comparative genomics and constraint-based models. Plos Ones 7: e34670. Available: http://www.pubmedcentral.nih.gov/articlerender. fcgi?artid=3359066&tool=pmcentrez&rendertype=abstract. Accessed 2012 Oct 29.
-
(2012)
Plos Ones
, vol.7
, pp. e34670
-
-
Hamilton, J.J.1
Reed, J.L.2
-
24
-
-
84859057484
-
CytoSEED: A Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the Model SEED
-
DeJongh M, Bockstege B, Frybarger P, Hazekamp N, Kammeraad J, et al. (2012) CytoSEED: a Cytoscape plugin for viewing, manipulating and analyzing metabolic models created by the Model SEED. Bioinformatics 28: 891-892. Availabl e : http://www.pubmedcentral.nih.gov/articlerender. fcgi?artid=3307106&tool=pmcentrez&rendertype=abstract.
-
(2012)
Bioinformatics
, vol.28
, pp. 891-892
-
-
Dejongh, M.1
Bockstege, B.2
Frybarger, P.3
Hazekamp, N.4
Kammeraad, J.5
-
25
-
-
0038559632
-
Extent of genetic lesions of the arginine and pyrimidine biosynthetic pathways in Lactobacillus plantarum, L. Paraplantarum, L. Pentosus, and L. Casei: Prevalence of CO2-dependent auxotrophs and characterization of deficient arg genes in L. Plantarum
-
Bringel F, Hubert J (2003) Extent of genetic lesions of the arginine and pyrimidine biosynthetic pathways in Lactobacillus plantarum, L. paraplantarum, L. pentosus, and L. casei: prevalence of CO2-dependent auxotrophs and characterization of deficient arg genes in L. plantarum. Appl Environ Microbiol 69: 2674-2683. doi:10.1128/AEM.69.5.2674.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 2674-2683
-
-
Bringel, F.1
Hubert, J.2
-
26
-
-
29244461323
-
In silico reconstruction of the metabolic pathways of Lactobacillus plantarum: Comparing predictions of nutrient requirements with those from growth experiments
-
Teusink B, Enckevort FHJ Van, Francke C, Wiersma A, Wegkamp A, et al. (2005) In silico reconstruction of the metabolic pathways of Lactobacillus plantarum: comparing predictions of nutrient requirements with those from growth experiments. Appl Environ Microbiol 71: 7253-7262. doi:10.1128/ AEM.71.11.7253.
-
(2005)
Appl Environ Microbiol
, vol.71
, pp. 7253-7262
-
-
Teusink, B.1
Van Enckevort, F.H.J.2
Francke, C.3
Wiersma, A.4
Wegkamp, A.5
-
27
-
-
34848866851
-
Glutamine deamidation by cerealassociated lactic acid bacteria
-
Accessed 2013 Apr 20
-
Vermeulen N, Gänzle MG, Vogel RF (2007) Glutamine deamidation by cerealassociated lactic acid bacteria. J Appl Microbiol 103: 1197-1205. Available: http://www.ncbi.nlm.nih.gov/pubmed/17897224. Accessed 2013 Apr 20.
-
(2007)
J Appl Microbiol
, vol.103
, pp. 1197-1205
-
-
Vermeulen, N.1
Gänzle, M.G.2
Vogel, R.F.3
-
28
-
-
34250864452
-
Identification of a gene cluster enabling Lactobacillus casei BL23 to utilize myoinositol
-
Accessed
-
Yebra MJ, Zúñ iga M, Beaufils S, Pérez-Martínez G, Deutscher J, et al. (2007) Identification of a gene cluster enabling Lactobacillus casei BL23 to utilize myoinositol. Appl Environ Microbiol 73: 3850-3858. Available: http://www. 2013 Mar 30.pubmedcentral.nih.gov/articlerender.fcgi?artid=1932728&tool=pmcentrez& rendertype=abstract. Accessed 2013 Mar 30.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 3850-3858
-
-
Yebra, M.J.1
Zúñiga, M.2
Beaufils, S.3
Pérez-Martínez, G.4
Deutscher, J.5
|