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Volumn 35, Issue 10, 2014, Pages 1260-1270

A New Workflow for Whole-Genome Sequencing of Single Human Cells

Author keywords

Allele dropout rate; CNV; LOH; Single cell; Whole genome amplification

Indexed keywords

CYCLIN DEPENDENT KINASE INHIBITOR 2A; GENOMIC DNA; MUTL PROTEIN HOMOLOG 1; PROTEIN P53;

EID: 84908875580     PISSN: 10597794     EISSN: 10981004     Source Type: Journal    
DOI: 10.1002/humu.22625     Document Type: Article
Times cited : (19)

References (40)
  • 2
    • 84908868022 scopus 로고    scopus 로고
    • Affymetrix White Paper: the loss of heterozygosity algorithm in genotyping console 2.0
    • Affymetrix. Revision 1, February 11, 2008.
    • Affymetrix. 2008. Affymetrix White Paper: the loss of heterozygosity algorithm in genotyping console 2.0. http://media.affymetrix.com/support/technical/whitepapers/loh_algorithm_gtc2_whitepaper.pdf Revision 1, February 11, 2008.
    • (2008)
  • 4
    • 84894624480 scopus 로고    scopus 로고
    • Dissecting genomic diversity, one cell at a time
    • Blainey PC, Quake SR. 2014. Dissecting genomic diversity, one cell at a time. Nat Methods 11:19-21.
    • (2014) Nat Methods , vol.11 , pp. 19-21
    • Blainey, P.C.1    Quake, S.R.2
  • 6
    • 84894613820 scopus 로고    scopus 로고
    • Singled out for sequencing
    • Chi KR. 2014. Singled out for sequencing. Nat Methods 11:13-17.
    • (2014) Nat Methods , vol.11 , pp. 13-17
    • Chi, K.R.1
  • 11
    • 84863229772 scopus 로고    scopus 로고
    • Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm
    • Hou Y, Song L, Zhu P, Zhang B, Tao Y, Xu X, Li F, Wu K, Liang J, Shao D, Wu H, Ye X, et al. 2012. Single-cell exome sequencing and monoclonal evolution of a JAK2-negative myeloproliferative neoplasm. Cell 148:873-885.
    • (2012) Cell , vol.148 , pp. 873-885
    • Hou, Y.1    Song, L.2    Zhu, P.3    Zhang, B.4    Tao, Y.5    Xu, X.6    Li, F.7    Wu, K.8    Liang, J.9    Shao, D.10    Wu, H.11    Ye, X.12
  • 14
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754-1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 18
    • 84896739948 scopus 로고    scopus 로고
    • Single cell genomics: advances and future perspectives
    • Macaulay IC, Voet T. 2014. Single cell genomics: advances and future perspectives. PLoS Genet 10:e1004126.
    • (2014) PLoS Genet , vol.10 , pp. e1004126
    • Macaulay, I.C.1    Voet, T.2
  • 19
    • 84879346704 scopus 로고    scopus 로고
    • A robust method to analyze copy number alterations of less than 100 kb in single cells using oligonucleotide array CGH
    • Mohlendick B, Bartenhagen C, Behrens B, Honisch E, Raba K, Knoefel WT, Stoecklein NH. 2013. A robust method to analyze copy number alterations of less than 100 kb in single cells using oligonucleotide array CGH. PLoS One 8:e67031.
    • (2013) PLoS One , vol.8 , pp. e67031
    • Mohlendick, B.1    Bartenhagen, C.2    Behrens, B.3    Honisch, E.4    Raba, K.5    Knoefel, W.T.6    Stoecklein, N.H.7
  • 22
    • 84894609875 scopus 로고    scopus 로고
    • Single-cell sequencing
    • Nawy T. 2014. Single-cell sequencing. Nat Methods 11:18.
    • (2014) Nat Methods , vol.11 , pp. 18
    • Nawy, T.1
  • 23
    • 73949105846 scopus 로고    scopus 로고
    • Use of high throughput sequencing to observe genome dynamics at a single cell level
    • Parkhomchuk D, Amstislavskiy V, Soldatov A, Ogryzko V. 2009. Use of high throughput sequencing to observe genome dynamics at a single cell level. Proc Natl Acad Sci USA 106:20830-20835.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 20830-20835
    • Parkhomchuk, D.1    Amstislavskiy, V.2    Soldatov, A.3    Ogryzko, V.4
  • 25
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: a flexible suite of utilities for comparing genomic features
    • Quinlan AR, Hall IM. 2010. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26:841-842.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 29
    • 66349083341 scopus 로고    scopus 로고
    • A geometric approach for classification and comparison of structural variants
    • Sindi S, Helman E, Bashir A, Raphael BJ. 2009. A geometric approach for classification and comparison of structural variants. Bioinformatics 25:i222-i230.
    • (2009) Bioinformatics , vol.25 , pp. i222-i230
    • Sindi, S.1    Helman, E.2    Bashir, A.3    Raphael, B.J.4
  • 31
    • 0036314089 scopus 로고    scopus 로고
    • SCOMP is superior to degenerated oligonucleotide primed-polymerase chain reaction for global amplification of minute amounts of DNA from microdissected archival tissue samples
    • Stoecklein NH, Erbersdobler A, Schmidt-Kittler O, Diebold J, Schardt JA, Izbicki JR, Klein CA. 2002. SCOMP is superior to degenerated oligonucleotide primed-polymerase chain reaction for global amplification of minute amounts of DNA from microdissected archival tissue samples. Am J Pathol 161:43-51.
    • (2002) Am J Pathol , vol.161 , pp. 43-51
    • Stoecklein, N.H.1    Erbersdobler, A.2    Schmidt-Kittler, O.3    Diebold, J.4    Schardt, J.A.5    Izbicki, J.R.6    Klein, C.A.7
  • 33
    • 73449133770 scopus 로고    scopus 로고
    • Genetic disparity between primary tumours, disseminated tumour cells, and manifest metastasis
    • Stoecklein NH, Klein CA. 2010. Genetic disparity between primary tumours, disseminated tumour cells, and manifest metastasis. Int J Cancer 126:589-598.
    • (2010) Int J Cancer , vol.126 , pp. 589-598
    • Stoecklein, N.H.1    Klein, C.A.2
  • 34
    • 85194972808 scopus 로고    scopus 로고
    • Regression shrinkage and selection via the lasso
    • Tibshirani R. 1996. Regression shrinkage and selection via the lasso. J Roy Statist Soc Ser B 58:267-288.
    • (1996) J Roy Statist Soc Ser B , vol.58 , pp. 267-288
    • Tibshirani, R.1
  • 39
    • 70350694443 scopus 로고    scopus 로고
    • Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads
    • Ye K, Schulz MH, Long Q, Apweiler R, Ning Z. 2009. Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads. Bioinformatics 25:2865-2871.
    • (2009) Bioinformatics , vol.25 , pp. 2865-2871
    • Ye, K.1    Schulz, M.H.2    Long, Q.3    Apweiler, R.4    Ning, Z.5
  • 40
    • 84871461434 scopus 로고    scopus 로고
    • Genome-wide detection of single-nucleotide and copy-number variations of a single human cell
    • Zong C, Lu S, Chapman AR, Xie XS. 2012. Genome-wide detection of single-nucleotide and copy-number variations of a single human cell. Science 338:1622-1626.
    • (2012) Science , vol.338 , pp. 1622-1626
    • Zong, C.1    Lu, S.2    Chapman, A.R.3    Xie, X.S.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.