메뉴 건너뛰기




Volumn 8, Issue November, 2014, Pages

Slicing, sampling, and distance-dependent effects affect network measures in simulated cortical circuit structures

Author keywords

Common neighbor; Cortical networks; Cortical slices; Graph theory; Motifs; Network topology; Nonrandom connectivity

Indexed keywords

ARTICLE; BRAIN CORTEX; CLUSTER ANALYSIS; CONNECTOME; DEFAULT MODE NETWORK; ELECTROPHYSIOLOGY; INTERNAL CONSISTENCY; PROBABILITY;

EID: 84908666578     PISSN: None     EISSN: 16625129     Source Type: Journal    
DOI: 10.3389/fnana.2014.00125     Document Type: Article
Times cited : (3)

References (31)
  • 1
    • 0029093324 scopus 로고
    • Recurrent excitation in neocortical circuits
    • Douglas, R. J., Koch, C., Mahowald, M., Martin, K. A., and Suarez, H. H. (1995). Recurrent excitation in neocortical circuits. Science 269, 981-985. doi: 10.1126/science.7638624
    • (1995) Science , vol.269 , pp. 981-985
    • Douglas, R.J.1    Koch, C.2    Mahowald, M.3    Martin, K.A.4    Suarez, H.H.5
  • 3
    • 34548065453 scopus 로고    scopus 로고
    • Clustering in complex directed networks
    • Fagiolo, G. (2007). Clustering in complex directed networks. Phys. Rev. E 76, 026107. doi: 10.1103/PhysRevE.76.026107
    • (2007) Phys. Rev. E , vol.76
    • Fagiolo, G.1
  • 5
    • 0026044708 scopus 로고
    • Synaptic physiology of horizontal connections in the cat's visual cortex
    • Hirsch, J. A., and Gilbert, C. D. (1991). Synaptic physiology of horizontal connections in the cat's visual cortex. J. Neurosci 11, 1800-1809.
    • (1991) J. Neurosci , vol.11 , pp. 1800-1809
    • Hirsch, J.A.1    Gilbert, C.D.2
  • 6
    • 0041353445 scopus 로고    scopus 로고
    • Pyramidal cell communication within local networks in layer 2/3 of rat neocortex
    • Holmgren, C., Harkany, T., Svennenfors, B., and Zilberter, Y. (2003). Pyramidal cell communication within local networks in layer 2/3 of rat neocortex. J. Physiol. 551(Pt 1), 139-153. doi: 10.1113/jphysiol.2003.044784
    • (2003) J. Physiol , vol.551 , pp. 139-153
    • Holmgren, C.1    Harkany, T.2    Svennenfors, B.3    Zilberter, Y.4
  • 7
    • 80755143593 scopus 로고    scopus 로고
    • Large-scale automated histology in the pursuit of connectomes
    • Kleinfeld, D., Bharioke, A., Blinder, P., Bock, D. D., Briggman, K. L., Chklovskii, D. B., et al. (2011). Large-scale automated histology in the pursuit of connectomes. J. Neurosci. 31, 16125-16138. doi: 10.1523/JNEUROSCI.4077-11.2011
    • (2011) J. Neurosci , vol.31 , pp. 16125-16138
    • Kleinfeld, D.1    Bharioke, A.2    Blinder, P.3    Bock, D.D.4    Briggman, K.L.5    Chklovskii, D.B.6
  • 8
    • 79955612100 scopus 로고    scopus 로고
    • Functional specificity of local synaptic connections in neocortical networks
    • Ko, H., Hofer, S. B., Pichler, B., Buchanan, K. A., Sjöström, P. J., and Mrsic-Flogel, T. D. (2011). Functional specificity of local synaptic connections in neocortical networks. Nature 473, 87-91. doi: 10.1038/nature09880
    • (2011) Nature , vol.473 , pp. 87-91
    • Ko, H.1    Hofer, S.B.2    Pichler, B.3    Buchanan, K.A.4    Sjöström, P.J.5    Mrsic-Flogel, T.D.6
  • 9
    • 58549118757 scopus 로고    scopus 로고
    • The excitatory neuronal network of the C2 barrel column in mouse primary somatosensory cortex
    • Lefort, S., Tomm, C., Floyd Sarria, J.-C., and Petersen, C. C. H. (2009). The excitatory neuronal network of the C2 barrel column in mouse primary somatosensory cortex. Neuron 61, 301-316. doi: 10.1016/j.neuron.2008.12.020
    • (2009) Neuron , vol.61 , pp. 301-316
    • Lefort, S.1    Tomm, C.2    Floyd Sarria, J.-C.3    Petersen, C.C.H.4
  • 11
    • 84868159004 scopus 로고    scopus 로고
    • Slow dynamics and high variability in balanced cortical networks with clustered connections
    • Litwin-Kumar, A., and Doiron, B. (2012). Slow dynamics and high variability in balanced cortical networks with clustered connections. Nat. Neurosci. 15, 1498-1505. doi: 10.1038/nn.3220
    • (2012) Nat. Neurosci , vol.15 , pp. 1498-1505
    • Litwin-Kumar, A.1    Doiron, B.2
  • 12
    • 84899739180 scopus 로고    scopus 로고
    • Small modifications to network topology can induce stochastic bistable spiking dynamics in a balanced cortical model
    • McDonnell, M. D., and Ward, L. M. (2014). Small modifications to network topology can induce stochastic bistable spiking dynamics in a balanced cortical model. PLoS ONE 9:e88254. doi: 10.1371/journal.pone.0088254
    • (2014) PLoS ONE , vol.9
    • McDonnell, M.D.1    Ward, L.M.2
  • 13
    • 0037174670 scopus 로고    scopus 로고
    • Network motifs: Simple building blocks of complex networks
    • Milo, R., Shen-Orr, S., Itzkovitz, S., Kashtan, N., Chklovskii, D., and Alon, U. (2002). Network motifs: simple building blocks of complex networks. Science 298, 824-827. doi: 10.1126/science.298.5594.824
    • (2002) Science , vol.298 , pp. 824-827
    • Milo, R.1    Shen-Orr, S.2    Itzkovitz, S.3    Kashtan, N.4    Chklovskii, D.5    Alon, U.6
  • 14
    • 43149086861 scopus 로고    scopus 로고
    • Nonrandom connectivity of the epileptic dentate gyrus predicts a major role for neuronal hubs in seizures
    • Morgan, R. J., and Soltesz, I. (2008). Nonrandom connectivity of the epileptic dentate gyrus predicts a major role for neuronal hubs in seizures. Proc. Natl. Acad. Sci. U.S.A. 105, 6179-6184. doi: 10.1073/pnas.0801372105
    • (2008) Proc. Natl. Acad. Sci. U.S.A , vol.105 , pp. 6179-6184
    • Morgan, R.J.1    Soltesz, I.2
  • 15
    • 79955101961 scopus 로고    scopus 로고
    • A synaptic organizing principle for cortical neuronal groups
    • Perin, R., Berger, T. K., and Markram, H. (2011). A synaptic organizing principle for cortical neuronal groups. Proc. Natl. Acad. Sci. U.S.A. 108, 5419-5424. doi: 10.1073/pnas.1016051108
    • (2011) Proc. Natl. Acad. Sci. U.S.A , vol.108 , pp. 5419-5424
    • Perin, R.1    Berger, T.K.2    Markram, H.3
  • 16
    • 84873890903 scopus 로고    scopus 로고
    • Computing the size and number of neuronal clusters in local circuits
    • Perin, R., Telefont, M., and Markram, H. (2013). Computing the size and number of neuronal clusters in local circuits. Front. Neuroanat. 7:1. doi: 10.3389/fnana.2013.00001
    • (2013) Front. Neuroanat , vol.7 , pp. 1
    • Perin, R.1    Telefont, M.2    Markram, H.3
  • 17
    • 27844551326 scopus 로고    scopus 로고
    • Dynamic properties of network motifs contribute to biological network organization
    • Prill, R. J., Iglesias, P. A., and Levchenko, A. (2005). Dynamic properties of network motifs contribute to biological network organization. PLoS Biol. 3:e343. doi: 10.1371/journal.pbio.0030343
    • (2005) PLoS Biol , vol.3
    • Prill, R.J.1    Iglesias, P.A.2    Levchenko, A.3
  • 18
    • 77954385460 scopus 로고    scopus 로고
    • Complex network measures of brain connectivity: Uses and interpretations
    • Rubinov, M., and Sporns, O. (2010). Complex network measures of brain connectivity: uses and interpretations.Neuroimage 52, 1059-1069. doi: 10.1016/j.neuroimage.2009.10.003
    • (2010) Neuroimage , vol.52 , pp. 1059-1069
    • Rubinov, M.1    Sporns, O.2
  • 19
    • 0024453643 scopus 로고
    • Density of neurons and synapses in the cerebral cortex of the mouse
    • Schüz, A., and Palm, G. (1989). Density of neurons and synapses in the cerebral cortex of the mouse. J. Comp. Neurol. 286:455.
    • (1989) J. Comp. Neurol , vol.286 , pp. 455
    • Schüz, A.1    Palm, G.2
  • 20
    • 64149093014 scopus 로고    scopus 로고
    • Reading the book of memory: Sparse sampling versus dense mapping of connectomes
    • Seung, H. S. (2009). Reading the book of memory: sparse sampling versus dense mapping of connectomes. Neuron62, 17-29. doi: 10.1016/j.neuron.2009.03.020
    • (2009) Neuron , vol.62 , pp. 17-29
    • Seung, H.S.1
  • 21
    • 0035924588 scopus 로고    scopus 로고
    • Rate, timing, and cooperativity jointly determine cortical synaptic plasticity
    • Sjöström, P. J., Turrigiano, G. G., and Nelson, S. B. (2001). Rate, timing, and cooperativity jointly determine cortical synaptic plasticity. Neuron 32, 1149-1164. doi: 10.1016/S0896-6273(01)00542-6
    • (2001) Neuron , vol.32 , pp. 1149-1164
    • Sjöström, P.J.1    Turrigiano, G.G.2    Nelson, S.B.3
  • 22
    • 18044383304 scopus 로고    scopus 로고
    • Highly nonrandom features of synaptic connectivity in local cortical circuits
    • Song, S., Sjöström, P. J., Reigl, M., Nelson, S., and Chklovskii, D. B. (2005). Highly nonrandom features of synaptic connectivity in local cortical circuits. PLoS Biol. 3:e68. doi: 10.1371/journal.pbio.0030068
    • (2005) PLoS Biol , vol.3
    • Song, S.1    Sjöström, P.J.2    Reigl, M.3    Nelson, S.4    Chklovskii, D.B.5
  • 23
    • 31144436747 scopus 로고    scopus 로고
    • The human connectome: A structural description of the human brain
    • Sporns, O., Tononi, G., and Kötter, R. (2005). The human connectome: a structural description of the human brain.PLoS Comput. Biol. 1:e42. doi: 10.1371/journal.pcbi.0010042
    • (2005) PLoS Comput. Biol , vol.1
    • Sporns, O.1    Tononi, G.2    Kötter, R.3
  • 25
    • 0030811192 scopus 로고    scopus 로고
    • Synaptic interactions in neocortical local circuits: Dual intracellular recordings in vitro
    • Thomson, A. M., and Deuchars, J. (1997). Synaptic interactions in neocortical local circuits: dual intracellular recordings in vitro. Cereb. Cortex 7, 510-522. doi: 10.1093/cercor/7.6.510
    • (1997) Cereb. Cortex , vol.7 , pp. 510-522
    • Thomson, A.M.1    Deuchars, J.2
  • 26
    • 0036716478 scopus 로고    scopus 로고
    • Synaptic connections and small circuits involving excitatory and inhibitory neurons in layers 2-5 of adult rat and cat neocortex: Triple intracellular recordings and biocytin labelling in vitro
    • Thomson, A. M., West, D. C., Wang, Y., and Bannister, A. P. (2002). Synaptic connections and small circuits involving excitatory and inhibitory neurons in layers 2-5 of adult rat and cat neocortex: triple intracellular recordings and biocytin labelling in vitro. Cereb. Cortex 12, 936-953. doi: 10.1093/cercor/12.9.936
    • (2002) Cereb. Cortex , vol.12 , pp. 936-953
    • Thomson, A.M.1    West, D.C.2    Wang, Y.3    Bannister, A.P.4
  • 27
    • 79952483532 scopus 로고    scopus 로고
    • Structural properties of the Caenorhabditis elegans neuronal network
    • Varshney, L. R., Chen, B. L., Paniagua, E., Hall, D. H., and Chklovskii, D. B. (2011). Structural properties of the Caenorhabditis elegans neuronal network. PLoS Comput. Biol. 7:e1001066. doi: 10.1371/journal.pcbi.1001066
    • (2011) PLoS Comput. Biol , vol.7
    • Varshney, L.R.1    Chen, B.L.2    Paniagua, E.3    Hall, D.H.4    Chklovskii, D.B.5
  • 28
    • 77549083812 scopus 로고    scopus 로고
    • Models of cortical networks with long-range patchy projections
    • Voges, N., Guijarro, C., Aertsen, A., and Rotter, S. (2010a). Models of cortical networks with long-range patchy projections. J. Comput. Neurosci. 28, 137-154. doi: 10.1007/s10827-009-0193-z
    • (2010) J. Comput. Neurosci , vol.28 , pp. 137-154
    • Voges, N.1    Guijarro, C.2    Aertsen, A.3    Rotter, S.4
  • 29
    • 77955997749 scopus 로고    scopus 로고
    • A modeler's view on the spatial structure of intrinsic horizontal connectivity in the neocortex
    • Voges, N., Schüz, A., Aertsen, A., and Rotter, S. (2010b). A modeler's view on the spatial structure of intrinsic horizontal connectivity in the neocortex. Prog. Neurobiol. 92, 277-292. doi: 10.1016/j.pneurobio.2010.05.001
    • (2010) Prog. Neurobiol , vol.92 , pp. 277-292
    • Voges, N.1    Schüz, A.2    Aertsen, A.3    Rotter, S.4
  • 30
    • 0032482432 scopus 로고    scopus 로고
    • Collective dynamics of 'small-world' networks
    • Watts, D. J., and Strogatz, S. H. (1998). Collective dynamics of 'small-world' networks. Nature 393, 440-442. doi: 10.1038/30918
    • (1998) Nature , vol.393 , pp. 440-442
    • Watts, D.J.1    Strogatz, S.H.2
  • 31
    • 14544308338 scopus 로고    scopus 로고
    • Excitatory cortical neurons form fine-scale functional networks
    • Yoshimura, Y., Dantzker, J., and Callaway, E. (2005). Excitatory cortical neurons form fine-scale functional networks. Nature 433, 868-873. doi: 10.1038/nature03252
    • (2005) Nature , vol.433 , pp. 868-873
    • Yoshimura, Y.1    Dantzker, J.2    Callaway, E.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.