Analysis of rotavirus genotypes in Korea during 2013: An increase in the G2P[4] genotype after the introduction of rotavirus vaccines

Vaccine

Volumn 32, Issue 48, 2014, Pages 6396-6402

  Kim, Jae Seok ^a   Kim, Hyun Soo ^a   Hyun, Jungwon ^a   Kim, Han Sung ^a   Song, Wonkeun ^a   Lee, Kyu Man ^a   Shin, Seon Hee ^a  

^a Hallym University College of Medicine   (South Korea)

Author keywords

Genotype; Korea; Rotavirus; Vaccine

Indexed keywords

AMINO ACID; EPITOPE; NEUTRALIZING ANTIBODY; PROTEIN VP4; PROTEIN VP7; ROTAVIRUS VACCINE; VIRUS ANTIGEN; VIRUS RNA; LIVE VACCINE; RIX4414 VACCINE;

AGE DISTRIBUTION; ANTIGENICITY; ARTICLE; CHILD; DNA SEQUENCE; FECES ANALYSIS; GENETIC VARIABILITY; GENOTYPE; HUMAN; INCIDENCE; INFANT; KOREA; MAJOR CLINICAL STUDY; MULTIPLEX POLYMERASE CHAIN REACTION; NEWBORN; NONHUMAN; NUCLEOTIDE SEQUENCE; PREVALENCE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA EXTRACTION; ROTAVIRUS; ROTAVIRUS INFECTION; SEQUENCE ALIGNMENT; VACCINATION; VIRAL GASTROENTERITIS; VIRUS DETECTION; VIRUS ISOLATION; VIRUS STRAIN; CLASSIFICATION; GASTROENTERITIS; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR EPIDEMIOLOGY; PRESCHOOL CHILD; ROTAVIRUS INFECTIONS; SOUTH KOREA; VIROLOGY;

ANTIGENS, VIRAL; CHILD; CHILD, PRESCHOOL; EPITOPES; GASTROENTERITIS; GENOTYPE; HUMANS; INFANT; INFANT, NEWBORN; MOLECULAR EPIDEMIOLOGY; REPUBLIC OF KOREA; RNA, VIRAL; ROTAVIRUS; ROTAVIRUS INFECTIONS; ROTAVIRUS VACCINES; VACCINES, ATTENUATED;

EID: 84908622849     PISSN: 0264410X     EISSN: 18732518     Source Type: Journal    
DOI: 10.1016/j.vaccine.2014.09.067     Document Type: Article

References (47)

1. World Health Organization. Manual of rotavirus detection and characterization methods. Available from . http://www.who.int/nuvi/rotavirus/WHO_IVB_08.17_eng.pdf.
2. Usonis V., Ivaskeviciene I., Desselberger U., Rodrigo C. The unpredictable diversity of co-circulating rotavirus types in Europe and the possible impact of universal mass vaccination programmes on rotavirus genotype incidence. Vaccine 2012, 30:4596-4605. Pediatric Rotavirus European CommiTtee (PROTECT).
3. Matthijnssens J., Otto P.H., Ciarlet M., Desselberger U., Van Ranst M., Johne R. VP6-sequence-based cutoff values as a criterion for rotavirus species demarcation. Arch Virol 2012, 157:1177-1182.
4. Matthijnssens J., Ciarlet M., McDonald S.M., Attoui H., Banyai K., Brister J.R., et al. Uniformity of rotavirus strain nomenclature proposed by the rotavirus classification working group (RCWG). Arch Virol 2011, 156:1397-1413.
5. Than V.T., Kim W. Prevalence of rotavirus genotypes in South Korea in 1989-2009: implications for a nationwide rotavirus vaccine program. Korean J Pediatr 2013, 56:465-473.
6. Kang J.O., Kilgore P., Kim J.S., Nyambat B., Kim J., Suh H.S., et al. Molecular epidemiological profile of rotavirus in South Korea, July 2002 through June 2003: emergence of G4P[6] and G9[8] strains. JID 2005, 192(Suppl. 1):S57-S63.
7. Anderson E.J. Time to begin a new chapter and expand rotavirus immunization. Clin Infect Dis 2014, 10.1093/cid/ciu475.
8. Aoki S.T., Settembre E.C., Trask S.D., Greenberg H.B., Harrison S.C., Dormitzer P.R. Structure of rotavirus outer-layer protein VP7 bound with a neutralizing Fab. Science 2009, 324:1444-1447.
9. Choe Y.J., Yang J.J., Park S.K., Choi E.H., Lee H.J. Comparative estimation of coverage between national immunization program vaccines and non-NIP vaccines in Korea. J Korean Med Sci 2013, 28:1283-1288.
10. Moon S.S., Green Y.S., Song J.W., Ahn C.N., Kim H., Park K.S., et al. Genetic distribution of group A human rotavirus types isolated in Gyunggi province of Korea, 1999-2002. J Clin Virol 2007, 38:57-63.
11. Jang S.J., Kang J.O., Moon D.S., Lee S.H., Ahn G.Y., Jeong O.Y., et al. Comparison of clinical characteristics of patients with rotavirus gastroenteritis relative to the infecting rotavirus G-P genotype. Korean J Lab Med 2006, 26:86-92.
12. Kim J.S., Kang J.O., Cho S.C., Jang Y.T., Min S.A., Park T.H., et al. Epidemiological profile of rotavirus infection in the republic of Korea: results from prospective surveillance in the Jeongeub district, 1 July 2002 through 30 Jun 2004. JID 2005, 192(Suppl. 1):S49-S56.
13. Oh H.K., Hong S.H., Ahn B.Y., Min H.K. Phylogenetic analysis of the rotavirus genotypes originated from children <5 years of age in 16 cities in South Korea, between 2000 and 2004. Osong Public Health Res Perspect 2012, 3:36-42.
14. Huh J.W., Kim W.H., Yoon M.H., Lim Y.H. Genotypic distribution of rotavirus strains causing severe gastroenteritis in Gyeonggi province, South Korea, from 2003 to 2005. Arch Virol 2009, 154:167-170.
15. Lee J.I., Song M.O., Chung J.Y., Han T.H., Ahn Y.M., Seo J.W., et al. Outbreak of rotavirus variant P[8] in Seoul, South Korea. J Med Virol 2008, 80:1661-1665.
16. Le V.P., Kim J.Y., Cho S.L., Nam S.W., Lim I., Lee H.J., et al. Detection of unusual rotavirus genotypes G8P[8] and G12P[6] in South Korea. J Med Virol 2008, 80:175-182.
17. Lee S.Y., Hong S.K., Lee S.G., Suh C.I., Park S.W., Lee J.H., et al. Human rotavirus genotypes in hospitalized children, South Korea, April 2005 to March 2007. Vaccine 2009, 27S:F97-F101.
18. Jeong H.S., Lee K.B., Jeong A.Y., Jo M.Y., Jung S.Y., Ahn J.H., et al. Genotypes of the circulating rotavirus strains in the seven prevaccine seasons from September 2000 to August 2007 in South Korea. Clin Microbiol Infect 2011, 17:232-250.
19. Shim S.Y., Jung Y.C., Le V.P., Son D.W., Ryoo E., Shim J.O., et al. Genetic variation of G4P[6] rotaviruses: evidence for novel strains circulating between the hospital and community. J Med Virol 2010, 82:700-706.
20. Han T.H., Kim C.H., Chung J.Y., Park S.H., Hwang E.S. Genetic characterization of rotavirus in children in South Korea from 2007 to 2009. Arch Virol 2010, 155:1663-1673.
21. Shim J.O., Baek I.H., Le V.P., Ko E.M., Seok W.S., Uh Y., et al. Molecular characterization of rotavirus diarrhea among children in South Korea: detection of an unusual G11 strain. Arch Virol 2011, 156:887-892.
22. Park S., Oh S., Lee J., Park G., Choi S., Chae Y., et al. Genotypes of rotavirus associated with acute gastroenteritis in Seoul, Korea. Microbiol Immunol 2011, 55:641-644.
23. Shim J.O., Than V.T., Ryoo E., Lim I., Yoon Y., Kim K., et al. Distribution of rotavirus G and P genotypes approximately two years following the introduction of rotavirus vaccines in South Korea. J Med Virol 2013, 85:1307-1312.
24. Than V.T., Jeong S., Kim W. Characterization of RotaTeq vaccine-derived rotaviruses in South Korean infants with rotavirus gastroenteritis. J Med Virol 2014, 10.1002/jmv.23975.
25. Ichihara M.Y., Rodrigues L.C., Teles Santos C.A., Teixeira Mda.G., De Jesus S.R., Alvim De Matos S.M., et al. Effectiveness of rotavirus vaccine against hospitalized rotavirus diarrhea: a case-control study. Vaccine 2014, 32:2740-2747.
26. da Silva Soares L., de Fátima Dos Santos Guerra S., do Socorro Lima de Oliveira A., da Silva Dos Santos F., de Fátima Costa de Menezes E.M., Mascarenhas Jd., et al. Diversity of rotavirus strains circulating in Northern Brazil after introduction of a rotavirus vaccine: high prevalence of G3P[6] genotype. J Med Virol 2014, 86:1065-1072.
27. Matthijnssens J., Zeller M., Heylen E., De Coster S., Vercauteren J., Braeckman T., et al. Higher proportion of G2P[4] rotaviruses in vaccinated hospitalized cases compared with unvaccinated hospitalized cases, despite high vaccine effectiveness against heterotypic G2P[4] rotaviruses. Clin Microbiol Infect 2014, [Epub ahead of print]. 10.1111/1469-0691.12612.
28. Dennis A.F., McDonald S.M., Payne D.C., Mijatovic-Rustempasic S., Esona M.D., Edwards K.M., et al. Molecular epidemiology of contemporary G2P[4] human rotaviruses cocirculating in a single U.S. community: footprints of a globally transitioning genotype. J Virol 2014, 88:3789-3801.
29. Khawaja S., Cardellino A., Mast T.C. Hospital-based surveillance and analysis of genotype variation in Nicaragua after the introduction of the pentavalent rotavirus vaccine. Pediatr Infect Dis J 2014, 33:e25-e28.
30. Steyer A., Sagadin M., Kolenc M., Poljšak-Prijatelj M. Molecular characterization of rotavirus strains from pre- and post-vaccination periods in a country with low vaccination coverage: the case of Slovenia. Infect Genet Evol 2014, [Epub ahead of print]. 10.1016/j.meegid.2014.06.021.
31. Alam M.M., Khurshid A., Shaukat S., Suleman R.M., Sharif S., Angez M., et al. Epidemiology and genetic diversity of rotavirus strains in children with acute gastroenteritis in Lahore, Pakistan. PLoS ONE 2013, 8:e67998.
32. Midgley S., Böttiger B., Jensen T.G., Friis-Møller A., Person L.K., Nielsen L., et al. Human group A rotavirus infections in children in Denmark; detection of reassortant G9 strains and zoonotic P[14] strains. Infect Genet Evol 2014, [Epub ahead of print]. 10.1016/j.meegid.2014.07.008.
33. Zeller M., Rahman M., Heylen E., De Coster S., De Vos S., Arijs I., et al. Rotavirus incidence and genotype distribution before and after national rotavirus vaccine introduction in Belgium. Vaccine 2010, 28:7507-7513.
34. WHO Building rotavirus laboratory capacity to support the global rotavirus surveillance network. Wkly Epidemiol Rec 2013, 88:217-224.
35. WHO Rotavirus vaccines. WHO position paper-January 2013. Wkly Epidemiol Rec 2013, 88:49-64.
36. Steele D., Reynecke E., de Beer M., Bos P., Smuts I. Characterization of rotavirus infection in a hospital neonatal unit in Pretoria, South Africa. J Trop Pediatr 2002, 48:167-171.
37. Mouna B.H.F., Hamida-Rebaï M.B., Heylen E., Zeller M., Moussa A., et al. Sequence and phylogenetic analyses of human rotavirus strains: comparison of VP7 and VP8(*) antigenic epitopes between Tunisian and vaccine strains before national rotavirus vaccine introduction. Infect Genet Evol 2013, 18:132-144.
38. Zeller M., Patton J.T., Heylen E., De Coster S., Ciarlet M., Van Rnast M., et al. Genetic analyses reveal differences in the VP7 and VP4 antigenic epitopes between human rotaviruses circulating in Belgium and rotaviruses in Rotarix and RotaTeq. J Clin Microbiol 2012, 50:966-976.
39. Kulkarni R., Arora R., Arora R., Chitambar S.D. Sequence analysis of VP7 and VP4 genes of G1P[8] rotaviruses circulating among diarrhoeic children in Pune, India: a comparison with Rotarix and RotaTeq vaccine strains. Vaccine 2014, 32S:A75-A83.
40. Mullick S., Mandal P., Nayak M.K., Ghosh S., De P., Rajendran K., et al. Hospital based surveillance and genetic characterization of rotavirus strains in children (<5 years) with acute gastroenteritis in Kolkata, India, revealed resurgence of G9 and G2 genotypes during 2011-2013. Vaccine 2014, 32S:A20-A28.
41. Solberg O.D., Hasing M.E., Trueba G., Eisenberg J.N.S. Characterization of novel VP7, VP4, and VP6 genotypes of a previously untypeable group A rotavirus. Virology 2009, 385:58-67.
42. Gouvea V., Glass R.I., Woods P., Taniguchi K., Clark H.F., Forrester B., et al. Polymerase chain reaction and amplification and typing of rotavirus nucleic acid from stool specimens. J Clin Microbiol 1990, 28:276-282.
43. Gentsch J.R., Glass R.I., Woods P., Gouvea V., Gorziglia M., Flores J., et al. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J Clin Microbiol 1992, 30:1365-1373.
44. Iturriza-Gómara M., Kang G., Gray J. Rotavirus genotyping: keeping up with an evolving population of human rotaviruses. J Clin Virol 2004, 31:259-265.
45. Das B.K., Gentsch J.R., Cicirello H.G., Woods P.A., Gupta A., Ramachandran M., et al. Characterization of rotavirus strains from newborns in New Delhi, India. J Clin Microbiol 1994, 32:1820-1822.
46. Banerjee I., Ramani S., Primrose B., Iturriza-Gomara M., Gray J.J., Brown D.W., et al. Modification of rotavirus multiplex RT-PCR for the detection of G12 strains based on characterization of emerging G12 rotavirus strains from South India. J Med Virol 2007, 79:1413-1421.
47. Aladin F., Nawaz S., Iturriza-Gómara M., Gray J. Identification of G8 rotavirus strains determined as G12 by rotavirus genotyping PCR: updating the current genotyping methods. J Clin Virol 2010, 47:340-344.