Genetic diversity of G3 rotavirus strains circulating in Argentina during 1998-2012 assessed by full genome analyses

PLoS ONE

Volumn 9, Issue 10, 2014, Pages

  Degiuseppe, Juan Ignacio ^a   Parra, Gabriel Ignacio ^b   Stupka, Juan Andrés ^a  

^a INSTITUTO NACIONAL DE ENFERMEDADES INFECCIOSAS   (Argentina)

^b Instituto de Investigaciones en Ciencias de la Salud Universidad Nacional de Asuncion   (Paraguay)

Author keywords

[No Author keywords available]

Indexed keywords

ARGENTINA; ARTICLE; EUROPE; GENE SEQUENCE; GENETIC VARIABILITY; GENOME ANALYSIS; GENOTYPE; HUMAN ROTAVIRUS; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; SEASONAL VARIATION; SEQUENCE HOMOLOGY; SOUTH AMERICA; STRAIN DIFFERENCE; VIRUS DETECTION; VIRUS GENE; VIRUS GENOME; VIRUS STRAIN; VP7 GENE; AMINO ACID SEQUENCE; CLASSIFICATION; EPIDEMIC; GENETICS; HIGH THROUGHPUT SEQUENCING; HUMAN; MOLECULAR EPIDEMIOLOGY; MOLECULAR GENETICS; PHYLOGENY; ROTAVIRUS; ROTAVIRUS INFECTIONS; VIROLOGY;

ROTAVIRUS;

CAPSID PROTEIN; VIRUS ANTIGEN; VP7 PROTEIN, ROTAVIRUS;

AMINO ACID SEQUENCE; ANTIGENS, VIRAL; ARGENTINA; CAPSID PROTEINS; DISEASE OUTBREAKS; EVOLUTION, MOLECULAR; GENETIC VARIATION; GENOME, VIRAL; GENOTYPE; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; MOLECULAR EPIDEMIOLOGY; MOLECULAR SEQUENCE DATA; PHYLOGENY; ROTAVIRUS; ROTAVIRUS INFECTIONS;

EID: 84908571861     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0110341     Document Type: Article

References (15)

1. Tate J, Burton AH, Boschi-Pinto C, Steele AD, Duque J, et al WHOcoordinated Global Rotavirus Surveillance Network (2012) 2008 estimate of worldwide rotavirus-associated mortality in children younger than 5 years before the introduction of universal rotavirus vaccination programmes: a systematic review and meta-analysis. Lancet Infect Dis 12: 136-141.
2. Estes MK, Kapikian AZ (2007) Rotaviruses. In Fields Virology, edn. 5, Edited by Knipe DM, Howley PM, Griffin DE, Lamb RA, Martin MA, Roizman B, Straus SE. Kluwer Health/Lippincott, Williams and Wilkins, pp. 1917-1974.
3. Matthijnssens J, Ciarlet M, McDonald SM, Attoui H, Bányai K, et al. (2011) Uniformity of rotavirus strain nomenclature proposed by the Rotavirus Classification Working Group (RCWG). Arch Virol 156: 1397-1413.
4. Trojnar E, Sachsenröder J, Twardziok S, Reetz J, Otto PH, et al. (2013) Identification of an avian group A rotavirus containing a novel VP4 gene with a close relationship to those of mammalian rotaviruses. J Gen Virol 94: 136-142.
5. Santos N, Hoshino Y (2005) Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15: 29-56.
6. Degiuseppe JI, Beltramino JC, Millan A, Stupka JA, Parra GI (2013) Complete genome analyses of G4P[6] rotavirus detected in Argentinean children with diarrhea provides evidence of interspecies transmission from swine. Clin Microbiol Infect 19: E367-371.
7. Ghosh S, Shintani T, Urushibara N, Taniguchi K, Kobayashi N (2012) Wholegenomic analysis of a human G1P[9] rotavirus strain reveals intergenogroupreassortment events. J Gen Virol 93: 1700-1705.
8. Maunula L, Von Bonsdorff CH (2002) Frequent reassortments may explain the genetic heterogeneity of rotaviruses: analysis of Finnish rotavirus strains. J Virol 76: 11793-11800.
9. Parra GI, Bok K, Martinez M, Gomez JA (2004) Evidence of rotavirus intragenic recombination between two sublineages of the same genotype. J Gen Virol 85: 1713-1716.
10. Steyer A, Poljsak-Prijateli M, Barlic-Maganja D, Marin J (2008) Human, porcine and bovine rotaviruses in Slovenia: evidence of interspecies transmission and genome reassortment. J Gen Virol 89: 1690-1698.
11. Matthijnssens J, Ciarlet M, Heiman E, Arijs I, Delbeke T, et al. (2008) Full genome-based classification of rotaviruses reveals a common origin between human Wa-like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J Virol 82: 3204-3219.
12. Matthijnssens J, Van Ranst M (2012) Genotype constellation and evolution of group A rotaviruses infecting humans. Curr Opin Virol 2: 426-433.
13. Bok K, Palacios G, Sijvarger K, Matson D, Gomez J (2001) Emergence of G9P[6] human rotaviruses in Argentina: phylogenetic relationships among G9 strains. J Clin Microbiol 39: 4020-4025.
14. Bok K, Castagnaro N, Borsa A, Nates S, Espul C, et al. (2001) Surveillance for rotavirus in Argentina. J Med Virol 65: 190-198.
15. Castello AA, Argüelles MH, Rota RP, Olthoff A, Jiang B, et al. (2006) Molecular epidemiology of group A rotavirus diarrhea among children in Buenos Aires, Argentina, from 1999 to 2003 and emergence of the infrequent genotype G12. J Clin Microbiol 44: 2046-2050.