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Volumn 93, Issue 8, 2012, Pages 1700-1705

Whole-genomic analysis of a human G1P[9] rotavirus strain reveals intergenogroupreassortment events

Author keywords

[No Author keywords available]

Indexed keywords

NONSTRUCTURAL PROTEIN 2; NONSTRUCTURAL PROTEIN 3; NONSTRUCTURAL PROTEIN 4; PROTEIN VP1; PROTEIN VP2; PROTEIN VP3; PROTEIN VP6; VIRUS PROTEIN;

EID: 84864046318     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.043026-0     Document Type: Article
Times cited : (9)

References (36)
  • 2
    • 84455208756 scopus 로고    scopus 로고
    • Molecular characterization of group A rotaviruses detected in children with gastroenteritis in Ireland in 2006-2009
    • Cashman, O., Collins, P. J., Lennon, G., Cryan, B., Martella, V., Fanning, S., Staines, A. & O'Shea, H. (2012). Molecular characterization of group A rotaviruses detected in children with gastroenteritis in Ireland in 2006-2009. Epidemiol Infect 140, 247-259.
    • (2012) Epidemiol Infect , vol.140 , pp. 247-259
    • Cashman, O.1    Collins, P.J.2    Lennon, G.3    Cryan, B.4    Martella, V.5    Fanning, S.6    Staines, A.7    O'Shea, H.8
  • 3
    • 34548407520 scopus 로고    scopus 로고
    • Rotaviruses and their replication
    • In, 5th edn. Edited by B. N. Fields, D. M. Knipe, P. M. Howley, D. E. Griffin, R. A. Lamb, M. A. Martin, B. Roizman & S. E. Straus. Philadelphia, PA: Lippincott Williams & Wilkins
    • Estes, M. K. & Kapikian, A. Z. (2007). Rotaviruses and their replication. In Fields Virology, 5th edn, pp. 1917-1974. Edited by B. N. Fields, D. M. Knipe, P. M. Howley, D. E. Griffin, R. A. Lamb, M. A. Martin, B. Roizman & S. E. Straus. Philadelphia, PA: Lippincott Williams & Wilkins.
    • (2007) Fields Virology , pp. 1917-1974
    • Estes, M.K.1    Kapikian, A.Z.2
  • 4
    • 18344397131 scopus 로고    scopus 로고
    • Diversity of rotavirus strains among children with acute diarrhea in China: 1998-2000 surveillance study
    • other authors
    • Fang, Z. Y., Yang, H., Qi, J., Zhang, J., Sun, L. W., Tang, J. Y., Ma, L., Du, Z. Q., He, A. H. & other authors (2002). Diversity of rotavirus strains among children with acute diarrhea in China: 1998-2000 surveillance study. J Clin Microbiol 40, 1875-1878.
    • (2002) J Clin Microbiol , vol.40 , pp. 1875-1878
    • Fang, Z.Y.1    Yang, H.2    Qi, J.3    Zhang, J.4    Sun, L.W.5    Tang, J.Y.6    Ma, L.7    Du, Z.Q.8    He, A.H.9
  • 5
    • 80053475959 scopus 로고    scopus 로고
    • Whole-genomic analysis of rotavirus strains: Current status and future prospects
    • Ghosh, S. & Kobayashi, N. (2011). Whole-genomic analysis of rotavirus strains: current status and future prospects. Future Microbiol 6, 1049-1065.
    • (2011) Future Microbiol , vol.6 , pp. 1049-1065
    • Ghosh, S.1    Kobayashi, N.2
  • 6
    • 77956285928 scopus 로고    scopus 로고
    • Complete genome constellation of a caprine group A rotavirus strain reveals common evolution with ruminant and human rotavirus strains
    • Ghosh, S., Alam, M. M., Ahmed, M. U., Talukdar, R. I., Paul, S. K. & Kobayashi, N. (2010a). Complete genome constellation of a caprine group A rotavirus strain reveals common evolution with ruminant and human rotavirus strains. J Gen Virol 91, 2367-2373.
    • (2010) J Gen Virol , vol.91 , pp. 2367-2373
    • Ghosh, S.1    Alam, M.M.2    Ahmed, M.U.3    Talukdar, R.I.4    Paul, S.K.5    Kobayashi, N.6
  • 8
    • 80051725440 scopus 로고    scopus 로고
    • Whole-genome analysis reveals the complex evolutionary dynamics of Kenyan G2P[4] human rotavirus strains
    • Ghosh, S., Adachi, N., Gatheru, Z., Nyangao, J., Yamamoto, D., Ishino, M., Urushibara, N. & Kobayashi, N. (2011). Whole-genome analysis reveals the complex evolutionary dynamics of Kenyan G2P[4] human rotavirus strains. J Gen Virol 92, 2201-2208.
    • (2011) J Gen Virol , vol.92 , pp. 2201-2208
    • Ghosh, S.1    Adachi, N.2    Gatheru, Z.3    Nyangao, J.4    Yamamoto, D.5    Ishino, M.6    Urushibara, N.7    Kobayashi, N.8
  • 10
    • 55549113560 scopus 로고    scopus 로고
    • Group A human rotavirus genomics: Evidence that gene constellations are influenced by viral protein interactions
    • Heiman, E. M., McDonald, S. M., Barro, M., Taraporewala, Z. F., Bar-Magen, T. & Patton, J. T. (2008). Group A human rotavirus genomics: evidence that gene constellations are influenced by viral protein interactions. J Virol 82, 11106-11116.
    • (2008) J Virol , vol.82 , pp. 11106-11116
    • Heiman, E.M.1    McDonald, S.M.2    Barro, M.3    Taraporewala, Z.F.4    Bar-Magen, T.5    Patton, J.T.6
  • 11
    • 0030040745 scopus 로고    scopus 로고
    • Species-specific and interspecies relatedness of NSP1 sequences in human, porcine, bovine, feline, and equine rotavirus strains
    • Kojima, K., Taniguchi, K. & Kobayashi, N. (1996). Species-specific and interspecies relatedness of NSP1 sequences in human, porcine, bovine, feline, and equine rotavirus strains. Arch Virol 141, 1-12.
    • (1996) Arch Virol , vol.141 , pp. 1-12
    • Kojima, K.1    Taniguchi, K.2    Kobayashi, N.3
  • 12
    • 36849063345 scopus 로고    scopus 로고
    • Detection of unusual rotavirus genotypes G8P[8] and G12P[6] in South Korea
    • other authors
    • Le, V. P., Kim, J. Y., Cho, S. L., Nam, S. W., Lim, I., Lee, H. J., Kim, K., Chung, S. I., Song, W. & other authors (2008). Detection of unusual rotavirus genotypes G8P[8] and G12P[6] in South Korea. J Med Virol 80, 175-182.
    • (2008) J Med Virol , vol.80 , pp. 175-182
    • Le, V.P.1    Kim, J.Y.2    Cho, S.L.3    Nam, S.W.4    Lim, I.5    Lee, H.J.6    Kim, K.7    Chung, S.I.8    Song, W.9
  • 13
    • 0030459342 scopus 로고    scopus 로고
    • Rotavirus G and P types circulating in Brazil: Characterization by RT-PCR, probe hybridization, and sequence analysis
    • Leite, J. P., Alfieri, A. A., Woods, P. A., Glass, R. I. & Gentsch, J. R. (1996). Rotavirus G and P types circulating in Brazil: characterization by RT-PCR, probe hybridization, and sequence analysis. Arch Virol 141, 2365-2374.
    • (1996) Arch Virol , vol.141 , pp. 2365-2374
    • Leite, J.P.1    Alfieri, A.A.2    Woods, P.A.3    Glass, R.I.4    Gentsch, J.R.5
  • 15
    • 41149115557 scopus 로고    scopus 로고
    • Full genome-based classification of rotaviruses reveals a common origin between human Wa-Like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains
    • other authors
    • Matthijnssens, J., Ciarlet, M., Heiman, E., Arijs, I., Delbeke, T., McDonald, S. M., Palombo, E. A., Iturriza-Gómara, M., Maes, P. & other authors (2008a). Full genome-based classification of rotaviruses reveals a common origin between human Wa-Like and porcine rotavirus strains and human DS-1-like and bovine rotavirus strains. J Virol 82, 3204-3219.
    • (2008) J Virol , vol.82 , pp. 3204-3219
    • Matthijnssens, J.1    Ciarlet, M.2    Heiman, E.3    Arijs, I.4    Delbeke, T.5    McDonald, S.M.6    Palombo, E.A.7    Iturriza-Gómara, M.8    Maes, P.9
  • 18
    • 77957234590 scopus 로고    scopus 로고
    • Phylodynamic analyses of rotavirus genotypes G9 and G12 underscore their potential for swift global spread
    • Matthijnssens, J., Heylen, E., Zeller, M., Rahman, M., Lemey, P. & Van Ranst, M. (2010a). Phylodynamic analyses of rotavirus genotypes G9 and G12 underscore their potential for swift global spread. Mol Biol Evol 27, 2431-2436.
    • (2010) Mol Biol Evol , vol.27 , pp. 2431-2436
    • Matthijnssens, J.1    Heylen, E.2    Zeller, M.3    Rahman, M.4    Lemey, P.5    van Ranst, M.6
  • 19
    • 75449110424 scopus 로고    scopus 로고
    • Simian rotaviruses possess divergent gene constellations that originated from interspecies transmission and reassortment
    • other authors
    • Matthijnssens, J., Taraporewala, Z. F., Yang, H., Rao, S., Yuan, L., Cao, D., Hoshino, Y., Mertens, P. P., Carner, G. R. & other authors (2010b). Simian rotaviruses possess divergent gene constellations that originated from interspecies transmission and reassortment. J Virol 84, 2013-2026.
    • (2010) J Virol , vol.84 , pp. 2013-2026
    • Matthijnssens, J.1    Taraporewala, Z.F.2    Yang, H.3    Rao, S.4    Yuan, L.5    Cao, D.6    Hoshino, Y.7    Mertens, P.P.8    Carner, G.R.9
  • 21
    • 79960412123 scopus 로고    scopus 로고
    • Multiple reassortment and interspecies transmission events contribute to the diversity of feline, canine and feline/ canine-like human group A rotavirus strains
    • other authors
    • Matthijnssens, J., De Grazia, S., Piessens, J., Heylen, E., Zeller, M., Giammanco, G. M., Bányai, K., Buonavoglia, C., Ciarlet, M. & other authors (2011b). Multiple reassortment and interspecies transmission events contribute to the diversity of feline, canine and feline/ canine-like human group A rotavirus strains. Infect Genet Evol 11, 1396-1406.
    • (2011) Infect Genet Evol , vol.11 , pp. 1396-1406
    • Matthijnssens, J.1    de Grazia, S.2    Piessens, J.3    Heylen, E.4    Zeller, M.5    Giammanco, G.M.6    Bányai, K.7    Buonavoglia, C.8    Ciarlet, M.9
  • 23
    • 0024549846 scopus 로고
    • RNA-RNA hybridization identifies a human rotavirus that is genetically related to feline rotavirus
    • Nakagomi, T. & Nakagomi, O. (1989). RNA-RNA hybridization identifies a human rotavirus that is genetically related to feline rotavirus. J Virol 63, 1431-1434.
    • (1989) J Virol , vol.63 , pp. 1431-1434
    • Nakagomi, T.1    Nakagomi, O.2
  • 24
    • 0024730349 scopus 로고
    • Identification of rotavirus genogroups by RNA-RNA hybridization
    • Nakagomi, O., Nakagomi, T., Akatani, K. & Ikegami, N. (1989). Identification of rotavirus genogroups by RNA-RNA hybridization. Mol Cell Probes 3, 251-261.
    • (1989) Mol Cell Probes , vol.3 , pp. 251-261
    • Nakagomi, O.1    Nakagomi, T.2    Akatani, K.3    Ikegami, N.4
  • 25
    • 0027030005 scopus 로고
    • Human rotavirus strain with unique VP4 neutralization epitopes as a result of natural reassortment between members of the AU-1 and Wa genogroups
    • Nakagomi, O., Kaga, E. & Nakagomi, T. (1992). Human rotavirus strain with unique VP4 neutralization epitopes as a result of natural reassortment between members of the AU-1 and Wa genogroups. Arch Virol 127, 365-371.
    • (1992) Arch Virol , vol.127 , pp. 365-371
    • Nakagomi, O.1    Kaga, E.2    Nakagomi, T.3
  • 27
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 28
    • 11244302672 scopus 로고    scopus 로고
    • Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine
    • Santos, N. & Hoshino, Y. (2005). Global distribution of rotavirus serotypes/genotypes and its implication for the development and implementation of an effective rotavirus vaccine. Rev Med Virol 15, 29-56.
    • (2005) Rev Med Virol , vol.15 , pp. 29-56
    • Santos, N.1    Hoshino, Y.2
  • 29
    • 0038156118 scopus 로고    scopus 로고
    • Surveillance of rotavirus strains in Rio de Janeiro, Brazil, from 1997 to 1999
    • Santos, N., Soares, C. C., Volotão, E. M., Albuquerque, M. C. & Hoshino, Y. (2003). Surveillance of rotavirus strains in Rio de Janeiro, Brazil, from 1997 to 1999. J Clin Microbiol 41, 3399-3402.
    • (2003) J Clin Microbiol , vol.41 , pp. 3399-3402
    • Santos, N.1    Soares, C.C.2    Volotão, E.M.3    Albuquerque, M.C.4    Hoshino, Y.5
  • 30
    • 79957613599 scopus 로고    scopus 로고
    • MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. & Kumar, S. (2011). MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28, 2731-2739.
    • (2011) Mol Biol Evol , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 31
    • 0024393029 scopus 로고
    • Complete nucleotide sequence of the gene encoding VP4 of a human rotavirus (strain K8) which has unique VP4 neutralization epitopes
    • Taniguchi, K., Nishikawa, K., Urasawa, T., Urasawa, S., Midthun, K., Kapikian, A. Z. & Gorziglia, M. (1989). Complete nucleotide sequence of the gene encoding VP4 of a human rotavirus (strain K8) which has unique VP4 neutralization epitopes. J Virol 63, 4101-4106.
    • (1989) J Virol , vol.63 , pp. 4101-4106
    • Taniguchi, K.1    Nishikawa, K.2    Urasawa, T.3    Urasawa, S.4    Midthun, K.5    Kapikian, A.Z.6    Gorziglia, M.7
  • 32
    • 0021186772 scopus 로고
    • Serotype determination of human rotavirus isolates and antibody prevalence in pediatric population in Hokkaido, Japan
    • Urasawa, S., Urasawa, T., Taniguchi, K. & Chiba, S. (1984). Serotype determination of human rotavirus isolates and antibody prevalence in pediatric population in Hokkaido, Japan. Arch Virol 81, 1-12.
    • (1984) Arch Virol , vol.81 , pp. 1-12
    • Urasawa, S.1    Urasawa, T.2    Taniguchi, K.3    Chiba, S.4
  • 33
    • 0037479779 scopus 로고    scopus 로고
    • Group A rotavirus in sewage samples from Barcelona and Cairo: Emergence of unusual genotypes
    • Villena, C., El-Senousy, W. M., Abad, F. X., Pintó, R. M. & Bosch, A. (2003). Group A rotavirus in sewage samples from Barcelona and Cairo: emergence of unusual genotypes. Appl Environ Microbiol 69, 3919-3923.
    • (2003) Appl Environ Microbiol , vol.69 , pp. 3919-3923
    • Villena, C.1    El-Senousy, W.M.2    Abad, F.X.3    Pintó, R.M.4    Bosch, A.5
  • 34
    • 77953527094 scopus 로고    scopus 로고
    • Full genomic analysis of a porcine-bovine reassortant G4P[6] rotavirus strain R479 isolated from an infant in China
    • Wang, Y. H., Kobayashi, N., Nagashima, S., Zhou, X., Ghosh, S., Peng, J. S., Hu, Q., Zhou, D. J. & Yang, Z. Q. (2010). Full genomic analysis of a porcine-bovine reassortant G4P[6] rotavirus strain R479 isolated from an infant in China. J Med Virol 82, 1094-1102.
    • (2010) J Med Virol , vol.82 , pp. 1094-1102
    • Wang, Y.H.1    Kobayashi, N.2    Nagashima, S.3    Zhou, X.4    Ghosh, S.5    Peng, J.S.6    Hu, Q.7    Zhou, D.J.8    Yang, Z.Q.9
  • 35
    • 0031898092 scopus 로고    scopus 로고
    • Serological and genomic characterization of human rotaviruses detected in China
    • Wu, H., Taniguchi, K., Urasawa, T. & Urasawa, S. (1998). Serological and genomic characterization of human rotaviruses detected in China. J Med Virol 55, 168-176.
    • (1998) J Med Virol , vol.55 , pp. 168-176
    • Wu, H.1    Taniguchi, K.2    Urasawa, T.3    Urasawa, S.4


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