Multiple Regulatory Systems Coordinate DNA Replication with Cell Growth in Bacillus subtilis

PLoS Genetics

Volumn 10, Issue 10, 2014, Pages

  Murray, Heath ^a   Koh, Alan ^a  

^a NEWCASTLE UNIVERSITY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

(P)PPGPP SYNTHASE; REGULATOR PROTEIN; REPLICATION INITIATOR PROTEIN DNAA; SOJ PROTEIN; SYNTHETASE; UNCLASSIFIED DRUG; YABA PROTEIN; DNA BINDING PROTEIN; ORIC CHROMOSOMAL REPLICATION ORIGIN; ORIGIN RECOGNITION COMPLEX; XYLOSE;

ARTICLE; BACILLUS SUBTILIS; BACTERIAL GROWTH; CARBON METABOLISM; CONTROLLED STUDY; DNA REPLICATION; DNA REPLICATION ORIGIN; FATTY ACID SYNTHESIS; GROWTH RATE; MICROBIAL RESPIRATION; NONHUMAN; PHOSPHOLIPID SYNTHESIS; PROTEIN SYNTHESIS; BIOSYNTHESIS; CELL CYCLE; CELL DIVISION; CELL GROWTH; GENE EXPRESSION REGULATION; GENETICS; GROWTH, DEVELOPMENT AND AGING; METABOLISM;

BACILLUS SUBTILIS; CELL CYCLE; CELL DIVISION; CELL GROWTH PROCESSES; DNA REPLICATION; DNA-BINDING PROTEINS; GENE EXPRESSION REGULATION, BACTERIAL; ORIGIN RECOGNITION COMPLEX; XYLOSE;

EID: 84908337235     PISSN: 15537390     EISSN: 15537404     Source Type: Journal    
DOI: 10.1371/journal.pgen.1004731     Document Type: Article

References (45)

1. Cooper S, Helmstetter CE, (1968) Chromosome replication and the division cycle of Escherichia coli B/r. J Mol Biol 31: 519–540.
2. Helmstetter CE, Cooper S, (1968) DNA synthesis during the division cycle of rapidly growing Escherichia coli B/r. J Mol Biol 31: 507–518.
3. Schaechter M, Maaloe O, Kjelgaard NO, (1958) Dependency on medium and temperature on cell size and chemical coposition during balanced growth of Salmonella typhimurium. J Gen Microbiol 19: 592–606.
4. Donachie WD, (1968) Relationship between cell size and time of initiation of DNA replication. Nature 219: 1077–1079.
5. Wold S, Skarstad K, Steen HB, Stokke T, Boye E, (1994) The initiation mass for DNA replication in Escherichia coli K-12 is dependent on growth rate. EMBO J 13: 2097–2102.
6. Leonard AC, Grimwade JE, (2011) Regulation of DnaA Assembly and Activity: Taking Directions from the Genome. Annu Rev Microbiol 65: 19–35.
7. Duderstadt KE, Chuang K, Berger JM, (2011) DNA stretching by bacterial initiators promotes replication origin opening. Nature 478: 209–213.
8. Atlung T, Lobner-Olesen A, Hansen FG, (1987) Overproduction of DnaA protein stimulates initiation of chromosome and minichromosome replication in Escherichia coli. Mol Gen Genet 206: 51–59.
9. Lobner-Olesen A, Skarstad K, Hansen FG, von Meyenburg K, Boye E, (1989) The DnaA protein determines the initiation mass of Escherichia coli K-12. Cell 57: 881–889.
10. Hill NS, Kadoya R, Chattoraj DK, Levin PA, (2012) Cell size and the initiation of DNA replication in bacteria. PLoS Genetics 8: e1002549.
11. Boye E, Nordstrom K, (2003) Coupling the cell cycle to cell growth. EMBO Rep 4: 757–760.
12. Ogura Y, Imai Y, Ogasawara N, Moriya S, (2001) Autoregulation of the dnaAzdnaN operon and effects of DnaA protein levels on replication initiation in Bacillus subtilis. J Bacteriol 183: 3833–3841.
13. Goranov AI, Breier AM, Merrikh H, Grossman AD, (2009) YabA of Bacillus subtilis controls DnaA-mediated replication initiation but not the transcriptional response to replication stress. Mol Microbiol 74: 454–466.
14. Sharpe ME, Hauser PM, Sharpe RG, Errington J, (1998) Bacillus subtilis cell cycle as studied by fluorescence microscopy: constancy of the cell length at initiation of DNA replication and evidence for active nucleoid partitioning. J Bacteriol 180: 547–555.
15. Lark KG, Maaloe O, (1956) Nucleic acid synthesis and the division cycle of Salmonella typhimurium. Biochim Biophys Acta 21: 448–458.
16. Lark KG, Maaloe O, Rostock O, (1955) Cytological studies of nuclear division in Salmonella typhimurium. J Gen Microbiol 13: 318–326.
17. Weart RB, Levin PA, (2003) Growth rate-dependent regulation of medial FtsZ ring formation. J Bacteriol 185: 2826–2834.
18. Muntel J, Fromion V, Goelzer A, Maabeta S, Mader U, et al. (2014) Comprehensive absolute quantification of the cytosolic proteome of Bacillus subtilis by data independent, parallel fragmentation in liquid chromatography/mass spectrometry (LC/MS(E)). Mol Cell Proteomics 13: 1008–1019.
19. Hassan AK, Moriya S, Ogura M, Tanaka T, Kawamura F, et al. (1997) Suppression of initiation defects of chromosome replication in Bacillus subtilis dnaA and oriC-deleted mutants by integration of a plasmid replicon into the chromosomes. J Bacteriol 179: 2494–2502.
20. Goranov AI, Katz L, Breier AM, Burge CB, Grossman AD, (2005) A transcriptional response to replication status mediated by the conserved bacterial replication protein DnaA. Proc Natl Acad Sci U S A 102: 12932–12937.
21. Murray H, Errington J, (2008) Dynamic control of the DNA replication initiation protein DnaA by Soj/ParA. Cell 135: 74–84.
22. Scholefield G, Errington J, Murray H, (2012) Soj/ParA stalls DNA replication by inhibiting helix formation of the initiator protein DnaA. EMBO J 31: 1542–1555.
23. Ogura Y, Ogasawara N, Harry EJ, Moriya S, (2003) Increasing the ratio of Soj to Spo0J promotes replication initiation in Bacillus subtilis. J Bacteriol 185: 6316–6324.
24. Soufo CD, Soufo HJ, Noirot-Gros MF, Steindorf A, Noirot P, et al. (2008) Cell-cycle-dependent spatial sequestration of the DnaA replication initiator protein in Bacillus subtilis. Dev Cell 15: 935–941.
25. Merrikh H, Grossman AD, (2011) Control of the replication initiator DnaA by an anti-cooperativity factor. Mol Microbiol 82: 434–446.
26. Scholefield G, Murray H, (2013) YabA and DnaD inhibit helix assembly of the DNA replication initiation protein DnaA. Mol Microbiol 90: 147–159.
27. Noirot-Gros MF, Dervyn E, Wu LJ, Mervelet P, Errington J, et al. (2002) An expanded view of bacterial DNA replication. Proc Natl Acad Sci USA 99: 8342–8347.
28. Lee PS, Grossman AD, (2006) The Chromosome partitioning proteins Soj (ParA) and Spo0J (ParB) contribute to accurate chromosome partitioning, separation of replicated sister origins, and regulation of replication initiation in Bacillus subtilis. Mol Microbiol 60: 853–869.
29. Wang X, Tang OW, Riley EP, Rudner DZ, (2014) The SMC Condensin Complex Is Required for Origin Segregation in Bacillus subtilis. Curr Biol 24: 287–292.
30. Wang X, Montero Llopis P, Rudner DZ (2014) Bacillus subtilis chromosome organization oscillates between two distinct patterns. Proc Natl Acad Sci USA 10.1073/pnas.1407461111.
31. Kawakami H, Keyamura K, Katayama T, (2005) Formation of an ATP-DnaA-specific initiation complex requires DnaA Arginine 285, a conserved motif in the AAA+ protein family. J Biol Chem 280: 27420–27430.
32. Janniere L, Canceill D, Suski C, Kanga S, Dalmais B, et al. (2007) Genetic evidence for a link between glycolysis and DNA replication. PloS One 2: e447.
33. Maciag M, Nowicki D, Janniere L, Szalewska-Palasz A, Wegrzyn G, (2011) Genetic response to metabolic fluctuations: correlation between central carbon metabolism and DNA replication in Escherichia coli. Microb Cell Fact 10: 19.
34. Schneider DA, Gourse RL, (2004) Relationship between growth rate and ATP concentration in Escherichia coli: a bioassay for available cellular ATP. J Biol Chem 279: 8262–8268.
35. Petersen C, Moller LB, (2000) Invariance of the nucleoside triphosphate pools of Escherichia coli with growth rate. J Biol Chem 275: 3931–3935.
36. Saxena R, Fingland N, Patil D, Sharma AK, Crooke E, (2013) Crosstalk between DnaA protein, the initiator of Escherichia coli chromosomal replication, and acidic phospholipids present in bacterial membranes. Int J Mol Sci 14: 8517–8537.
37. Sikora AE, Zielke R, Wegrzyn A, Wegrzyn G, (2006) DNA replication defect in the Escherichia coli cgtA(ts) mutant arising from reduced DnaA levels. Arch Microbiol 185: 340–347.
38. Moriya S, Fukuoka T, Ogasawara N, Yoshikawa H, (1988) Regulation of initiation of the chromosomal replication by DnaA-boxes in the origin region of the Bacillus subtilis chromosome. EMBO J 7: 2911–2917.
39. Levine A, Vannier F, Dehbi M, Henckes G, Seror SJ, (1991) The stringent response blocks DNA replication outside the ori region in Bacillus subtilis and at the origin in Escherichia coli. J Mol Biol 219: 605–613.
40. Wang JD, Sanders GM, Grossman AD, (2007) Nutritional control of elongation of DNA replication by (p)ppGpp. Cell 128: 865–875.
41. Lesley JA, Shapiro L, (2008) SpoT regulates DnaA stability and initiation of DNA replication in carbon-starved Caulobacter crescentus. J Bacteriol 190: 6867–6880.
42. Schreiber G, Ron EZ, Glaser G, (1995) ppGpp-mediated regulation of DNA replication and cell division in Escherichia coli. Current Microbiol 30: 27–32.
43. Sekimizu K, Kornberg A, (1988) Cardiolipin activation of DnaA protein, the initiation protein of replication in Escherichia coli. J Biol Chem 263: 7131–7135.
44. Xia W, Dowhan W, (1995) In vivo evidence for the involvement of anionic phospholipids in initiation of DNA replication in Escherichia coli. Proc Natl Acad Sci USA 92: 783–787.
45. Breier AM, Grossman AD, (2009) Dynamic association of the replication initiator and transcription factor DnaA with the Bacillus subtilis chromosome during replication stress. J Bacteriol 191: 486–493.