Polypeptide signaling molecules in plant development

Current Opinion in Plant Biology

Volumn 23, Issue , 2015, Pages 8-14

  Grienenberger, Etienne ^a,b   Fletcher, Jennifer C ^a,b  

^a PLANT GENE EXPRESSION CENTER   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PEPTIDE;

FERTILIZATION; GROWTH, DEVELOPMENT AND AGING; MERISTEM; METABOLISM; PHYSIOLOGY; PLANT DEVELOPMENT; PLANT ROOT; SIGNAL TRANSDUCTION;

FERTILIZATION; MERISTEM; PEPTIDES; PLANT DEVELOPMENT; PLANT ROOTS; SIGNAL TRANSDUCTION;

EID: 84908191783     PISSN: 13695266     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.pbi.2014.09.013     Document Type: Review

References (61)

1. Murphy E., Smith S., De Smet I. Small signaling peptides in Arabidopsis development: how cells communicate over a short distance. Plant Cell 2012, 24:3198-3217.
2. Lease K.A., Walker J.C. The Arabidopsis unannotated secreted peptide database, a resource for plant peptidomics. Plant Physiol 2006, 142:831-838.
3. Shiu S.H., Bleecker A.B. Plant receptor-like kinase gene family: diversity, function, and signaling. Sci STKE 2001, 2001:re22.
4. Depuydt S., Rodriguez-Villalon A., Santuari L., Wyser-Rmili C., Ragni L., Hardtke C.S. Suppression of Arabidopsis protophloem differentiation and root meristem growth by CLE45 requires the receptor-like kinase BAM3. Proc Natl Acad Sci U S A 2013, 110:7074-7079.
5. Haruta M., Sabat G., Stecker K., Minkoff B.B., Sussman M.R. A peptide hormone and its receptor protein kinase regulate plant cell expansion. Science 2014, 343:408-411.
6. Araya T., Miyamoto M., Wibowo J., Suzuki A., Kojima S., Tsuchiya Y.N., Sawa S., Fukuda H., von Wiren N., Takahashi H. CLE-CLAVATA1 peptide-receptor signaling module regulates the expansion of plant root systems in a nitrogen-dependent manner. Proc Natl Acad Sci U S A 2014, 111:2029-2034.
7. Kumpf R.P., Shi C.L., Larrieu A., Sto I.M., Butenko M.A., Peret B., Riiser E.S., Bennett M.J., Aalen R.B. Floral organ abscission peptide IDA and its HAE/HSL2 receptors control cell separation during lateral root emergence. Proc Natl Acad Sci U S A 2013, 110:5235-5240.
8. Stahl Y., Wink R.H., Ingram G.C., Simon R. A signaling module controlling the stem cell niche in Arabidopsis root meristems. Curr Biol 2009, 19:909-914.
9. Wolf S., Hofte H. Growth control: a saga of cell walls, ROS, and peptide receptors. Plant Cell 2014, 26:1848-1856.
10. Murphy E., De Smet I. Understanding the RALF family: a tale of many species. Trends Plant Sci 2014, 10.1016/j.tplants.2014.06.005.
11. Ohyama K., Ogawa M., Matsubayashi Y. Identification of a biologically active, small, secreted peptide in Arabidopsis by in silico gene screening, followed by LC-MS-based structure analysis. Plant J 2008, 55:152-160.
12. Roberts I., Smith S., De Rybel B., Van Den Broeke J., Smet W., De Cokere S., Mispelaere M., De Smet I., Beeckman T. The CEP family in land plants: evolutionary analyses, expression studies, and role in Arabidopsis shoot development. J Exp Bot 2013, 64:5371-5381.
13. Delay C., Imin N., Djordjevic M.A. CEP genes regulate root and shoot development in response to environmental cues and are specific to seed plants. J Exp Bot 2013, 64:5383-5394.
14. Imin N., Mohd-Radzman N.A., Ogilvie H.A., Djordjevic M.A. The peptide-encoding CEP1 gene modulates lateral root and nodule numbers in Medicago truncatula. J Exp Bot 2013, 64:5395-5409.
15. Jewaria P.K., Hara T., Tanaka H., Kondo T., Betsuyaku S., Sawa S., Sakagami Y., Aimoto S., Kakimoto T. Differential effects of the peptides Stomagen, EPF1 and EPF2 on activation of MAP kinase MPK6 and the SPCH protein level. Plant Cell Physiol 2013, 54:1253-1262.
16. Lee J.S., Kuroha T., Hnilova M., Khatayevich D., Kanaoka M.M., McAbee J.M., Sarikaya M., Tamerler C., Torii K.U. Direct interaction of ligand-receptor pairs specifying stomatal patterning. Genes Dev 2012, 26:126-136.
17. Engineer C.B., Ghassemian M., Anderson J.C., Peck S.C., Hu H., Schroeder J.I. Carbonic anhydrases, EPF2 and a novel protease mediate CO2 control of stomatal development. Nature 2014, 513:246-250.
18. Fletcher J.C., Brand U., Running M.P., Simon R., Meyerowitz E.M. Signaling of cell fate decisions by CLAVATA3 in Arabidopsis shoot meristems. Science 1999, 283:1911-1914.
19. Kondo T., Sawa S., Kinoshita A., Mizuno S., Kakimoto T., Fukuda H., Sakagami Y. A plant peptide encoded by CLV3 identified by in situ MALDI-TOF MS analysis. Science 2006, 313:845-848.
20. Clark S.E., Williams R.W., Meyerowitz E.M. The CLAVATA1 gene encodes a putative receptor kinase that controls shoot and floral meristem size in Arabidopsis. Cell 1997, 89:575-585.
21. Kinoshita A., Betsuyaku S., Osakabe Y., Mizuno S., Nagawa S., Stahl Y., Simon R., Yamaguchi-Shinozaki K., Fukuda H., Sawa S. RPK2 is an essential receptor-like kinase that transmits the CLV3 signal in Arabidopsis. Development 2010, 137:3911-3920.
22. Muller R., Bleckmann A., Simon R. The receptor kinase CORYNE of Arabidopsis transmits the stem cell-limiting signal CLAVATA3 independently of CLAVATA1. Plant Cell 2008, 20:934-946.
23. Kayes J.M., Clark S.E. CLAVATA2, a regulator of meristem and organ development in Arabidopsis. Development 1998, 125:3843-3851.
24. Sarkar A.K., Luijten M., Miyashima S., Lenhard M., Hashimoto T., Nakajima K., Scheres B., Heidstra R., Laux T. Conserved factors regulate signalling in Arabidopsis thaliana shoot and root stem cell organizers. Nature 2007, 446:811-814.
25. Brand U., Fletcher J.C., Hobe M., Meyerowitz E.M., Simon R. Dependence of stem cell fate in Arabidopsis on a feedback loop regulated by CLV3 activity. Science 2000, 289:617-619.
26. Katsir L., Davies K.A., Bergmann D.C., Laux T. Peptide signaling in plant development. Curr Biol 2011, 21:R356-R364.
27. Bommert P., Je B.I., Goldshmidt A., Jackson D. The maize Galpha gene COMPACT PLANT2 functions in CLAVATA signalling to control shoot meristem size. Nature 2013, 502:555-558.
28. Bommert P., Nagasawa N.S., Jackson D. Quantitative variation in maize kernel row number is controlled by the FASCIATED EAR2 locus. Nat Genet 2013, 45:334-337.
29. Stahl Y., Grabowski S., Bleckmann A., Kuhnemuth R., Weidtkamp-Peters S., Pinto K.G., Kirschner G.K., Schmid J.B., Wink R.H., Hulsewede A., et al. Moderation of Arabidopsis root stemness by CLAVATA1 and ARABIDOPSIS CRINKLY4 receptor kinase complexes. Curr Biol 2013, 23:362-371.
30. Matsuzaki Y., Ogawa-Ohnishi M., Mori A., Matsubayashi Y. Secreted peptide signals required for maintenance of root stem cell niche in Arabidopsis. Science 2010, 329:1065-1067.
31. Meng L., Buchanan B.B., Feldman L.J., Luan S. CLE-like (CLEL) peptides control the pattern of root growth and lateral root development in Arabidopsis. Proc Natl Acad Sci U S A 2012, 109:1760-1765.
32. Whitford R., Fernandez A., Tejos R., Perez A.C., Kleine-Vehn J., Vanneste S., Drozdzecki A., Leitner J., Abas L., Aerts M., et al. GOLVEN secretory peptides regulate auxin carrier turnover during plant gravitropic responses. Dev Cell 2012, 22:678-685.
33. Komori R., Amano Y., Ogawa-Ohnishi M., Matsubayashi Y. Identification of tyrosylprotein sulfotransferase in Arabidopsis. Proc Natl Acad Sci U S A 2009, 106:15067-15072.
34. Ito Y., Nakanomyo I., Motose H., Iwamoto K., Sawa S., Dohmae N., Fukuda H. Dodeca-CLE peptides as suppressors of plant stem cell differentiation. Science 2006, 313:842-845.
35. Hirakawa Y., Shinohara H., Kondo Y., Inoue A., Nakanomyo I., Ogawa M., Sawa S., Ohashi-Ito K., Matsubayashi Y., Fukuda H. Non-cell-autonomous control of vascular stem cell fate by a CLE peptide/receptor system. Proc Natl Acad Sci U S A 2008, 105:15208-15213.
36. Whitford R., Fernandez A., De Groodt R., Ortega E., Hilson P. Plant CLE peptides from two distinct functional classes synergistically induce division of vascular cells. Proc Natl Acad Sci U S A 2008, 105:18625-18630.
37. Hirakawa Y., Kondo Y., Fukuda H. TDIF peptide signaling regulates vascular stem cell proliferation via the WOX4 homeobox gene in Arabidopsis. Plant Cell 2010, 22:2618-2629.
38. DeYoung B.J., Bickle K.L., Schrage K.J., Muskett P., Patel K., Clark S.E. The CLAVATA1-related BAM1, BAM2 and BAM3 receptor kinase-like proteins are required for meristem function in Arabidopsis. Plant J 2006, 45:1-16.
39. Ogawa M., Shinohara H., Sakagami Y., Matsubayashi Y. Arabidopsis CLV3 peptide directly binds CLV1 ectodomain. Science 2008, 319:294.
40. Rodriguez-Villalon A., Gujas B., Kang Y.H., Breda A.S., Cattaneo P., Depuydt S., Hardtke C.S. Molecular genetic framework for protophloem formation. Proc Natl Acad Sci U S A 2014, 111:11551-11556.
41. Truernit E., Bauby H., Belcram K., Barthelemy J., Palauqui J.C. OCTOPUS, a polarly localised membrane-associated protein, regulates phloem differentiation entry in Arabidopsis thaliana. Development 2012, 139:1306-1315.
42. Endo S., Shinohara H., Matsubayashi Y., Fukuda H. A novel pollen-pistil interaction conferring high-temperature tolerance during reproduction via CLE45 signaling. Curr Biol 2013, 23:1670-1676.
43. Vieten A., Sauer M., Brewer P.B., Friml J. Molecular and cellular aspects of auxin-transport-mediated development. Trends Plant Sci 2007, 12:160-168.
44. Fernandez A., Drozdzecki A., Hoogewijs K., Nguyen A., Beeckman T., Madder A., Hilson P. Transcriptional and functional classification of the GOLVEN/ROOT GROWTH FACTOR/CLE-like signaling peptides reveals their role in lateral root and hair formation. Plant Physiol 2013, 161:954-970.
45. Swarup K., Benkova E., Swarup R., Casimiro I., Peret B., Yang Y., Parry G., Nielsen E., De Smet I., Vanneste S., et al. The auxin influx carrier LAX3 promotes lateral root emergence. Nat Cell Biol 2008, 10:946-954.
46. Himanen K., Boucheron E., Vanneste S., de Almeida Engler J., Inze D., Beeckman T. Auxin-mediated cell cycle activation during early lateral root initiation. Plant Cell 2002, 14:2339-2351.
47. Kutschmar A., Rzewuski G., Stuhrwohldt N., Beemster G.T., Inze D., Sauter M. PSK-alpha promotes root growth in Arabidopsis. New Phytol 2009, 181:820-831.
48. Chilley P.M., Casson S.A., Tarkowski P., Hawkins N., Wang K.L., Hussey P.J., Beale M., Ecker J.R., Sandberg G.K., Lindsey K. The POLARIS peptide of Arabidopsis regulates auxin transport and root growth via effects on ethylene signaling. Plant Cell 2006, 18:3058-3072.
49. Butenko M.A., Patterson S.E., Grini P.E., Stenvik G.E., Amundsen S.S., Mandal A., Aalen R.B. Inflorescence deficient in abscission controls floral organ abscission in Arabidopsis and identifies a novel family of putative ligands in plants. Plant Cell 2003, 15:2296-2307.
50. Stenvik G.E., Tandstad N.M., Guo Y., Shi C.L., Kristiansen W., Holmgren A., Clark S.E., Aalen R.B., Butenko M.A. The EPIP peptide of INFLORESCENCE DEFICIENT IN ABSCISSION is sufficient to induce abscission in Arabidopsis through the receptor-like kinases HAESA and HAESA-LIKE2. Plant Cell 2008, 20:1805-1817.
51. Garcia D., Fitz Gerald J.N., Berger F. Maternal control of integument cell elongation and zygotic control of endosperm growth are coordinated to determine seed size in Arabidopsis. Plant Cell 2005, 17:52-60.
52. Berger F., Grini P.E., Schnittger A. Endosperm: an integrator of seed growth and development. Curr Opin Plant Biol 2006, 9:664-670.
53. Ingouff M., Jullien P.E., Berger F. The female gametophyte and the endosperm control cell proliferation and differentiation of the seed coat in Arabidopsis. Plant Cell 2006, 18:3491-3501.
54. Sprunck S., Rademacher S., Vogler F., Gheyselinck J., Grossniklaus U., Dresselhaus T. Egg cell-secreted EC1 triggers sperm cell activation during double fertilization. Science 2012, 338:1093-1097.
55. Costa L.M., Marshall E., Tesfaye M., Silverstein K.A., Mori M., Umetsu Y., Otterbach S.L., Papareddy R., Dickinson H.G., Boutiller K., et al. Central cell-derived peptides regulate early embryo patterning in flowering plants. Science 2014, 344:168-172.
56. Fiume E., Fletcher J.C. Regulation of Arabidopsis embryo and endosperm development by the polypeptide signaling molecule CLE8. Plant Cell 2012, 24:1000-1012.
57. Feng Z., Zhang B., Ding W., Liu X., Yang D.L., Wei P., Cao F., Zhu S., Zhang F., Mao Y., et al. Efficient genome editing in plants using a CRISPR/Cas system. Cell Res 2013, 23:1229-1232.
58. Belhaj K., Chaparro-Garcia A., Kamoun S., Nekrasov V. Plant genome editing made easy: targeted mutagenesis in model and crop plants using the CRISPR/Cas system. Plant Methods 2013, 9:39.
59. Song X.F., Guo P., Ren S.C., Xu T.T., Liu C.M. Antagonistic peptide technology for functional dissection of CLV3/ESR genes in Arabidopsis. Plant Physiol 2013, 161:1076-1085.
60. Butenko M.A., Wildhagen M., Albert M., Jehle A., Kalbacher H., Aalen R.B., Felix G. Tools and strategies to match peptide-ligand receptor pairs. Plant Cell 2014, 26:1838-1847.
61. Malamy J.E., Benfey P.N. Organization and cell differentiation in lateral roots of Arabidopsis thaliana. Development 1997, 124:33-44.