-
1
-
-
67650141987
-
Non mycobacterial virulence genes in the genome of the emerging pathogen Mycobacterium abscessus
-
2694998, 19543527
-
Ripoll F, Pasek S, Schenowitz C, Dossat C, Barbe V, Rottman M, Macheras E, Heym B, Herrmann JL, Daffé M, Brosch R, Risler JL, Gaillard JL. Non mycobacterial virulence genes in the genome of the emerging pathogen Mycobacterium abscessus. PLoS One 2009, 4:e5660. 10.1371/journal.pone.0005660, 2694998, 19543527.
-
(2009)
PLoS One
, vol.4
, pp. e5660
-
-
Ripoll, F.1
Pasek, S.2
Schenowitz, C.3
Dossat, C.4
Barbe, V.5
Rottman, M.6
Macheras, E.7
Heym, B.8
Herrmann, J.L.9
Daffé, M.10
Brosch, R.11
Risler, J.L.12
Gaillard, J.L.13
-
2
-
-
42549101914
-
Outbreak of Mycobacterium abscessus wound infections among "lipotourists" from the United States who underwent abdominoplasty in the Dominican Republic
-
18444853
-
Furuya EY, Paez A, Srinivasan A, Cooksey R, Augenbraun M, Baron M, Brudney K, Della-Latta P, Estivariz C, Fischer S, Flood M, Kellner P, Roman C, Yakrus M, Weiss D, Granowitz EV. Outbreak of Mycobacterium abscessus wound infections among "lipotourists" from the United States who underwent abdominoplasty in the Dominican Republic. Clin Infect Dis 2008, 46:1181-1188. 10.1086/529191, 18444853.
-
(2008)
Clin Infect Dis
, vol.46
, pp. 1181-1188
-
-
Furuya, E.Y.1
Paez, A.2
Srinivasan, A.3
Cooksey, R.4
Augenbraun, M.5
Baron, M.6
Brudney, K.7
Della-Latta, P.8
Estivariz, C.9
Fischer, S.10
Flood, M.11
Kellner, P.12
Roman, C.13
Yakrus, M.14
Weiss, D.15
Granowitz, E.V.16
-
3
-
-
40749111079
-
Molecular characterization of Mycobacterium massiliense and Mycobacterium bolletii in isolates collected from outbreaks of infections after laparoscopic surgeries and cosmetic procedures
-
2268380, 18174307
-
Viana-Niero C, Lima KV, Lopes ML, Rabello MC, Marsola LR, Brilhante VC, Durham AM, Leão SC. Molecular characterization of Mycobacterium massiliense and Mycobacterium bolletii in isolates collected from outbreaks of infections after laparoscopic surgeries and cosmetic procedures. J Clin Microbiol 2008, 46:850-855. 10.1128/JCM.02052-07, 2268380, 18174307.
-
(2008)
J Clin Microbiol
, vol.46
, pp. 850-855
-
-
Viana-Niero, C.1
Lima, K.V.2
Lopes, M.L.3
Rabello, M.C.4
Marsola, L.R.5
Brilhante, V.C.6
Durham, A.M.7
Leão, S.C.8
-
4
-
-
79551545950
-
Clinical significance of differentiation of Mycobacterium massiliense from Mycobacterium abscessus
-
20833823
-
Koh WJ, Jeon K, Lee NY, Kim BJ, Kook YH, Lee SH, Park YK, Kim CK, Shin SJ, Huitt GA, Daley CL, Kwon OJ. Clinical significance of differentiation of Mycobacterium massiliense from Mycobacterium abscessus. Am J Respir Crit Care Med 2011, 183:405-410. 10.1164/rccm.201003-0395OC, 20833823.
-
(2011)
Am J Respir Crit Care Med
, vol.183
, pp. 405-410
-
-
Koh, W.J.1
Jeon, K.2
Lee, N.Y.3
Kim, B.J.4
Kook, Y.H.5
Lee, S.H.6
Park, Y.K.7
Kim, C.K.8
Shin, S.J.9
Huitt, G.A.10
Daley, C.L.11
Kwon, O.J.12
-
5
-
-
33744783400
-
Mycobacterium abscessus: an emerging rapid-growing potential pathogen
-
16725007
-
Petrini B. Mycobacterium abscessus: an emerging rapid-growing potential pathogen. APMIS 2006, 114:319-328. 10.1111/j.1600-0463.2006.apm_390.x, 16725007.
-
(2006)
APMIS
, vol.114
, pp. 319-328
-
-
Petrini, B.1
-
6
-
-
20544473809
-
Mycobacterium abscessus and other nontuberculous mycobacteria: evolving respiratory pathogens in cystic fibrosis: a case report and review
-
16004174
-
Hayes D. Mycobacterium abscessus and other nontuberculous mycobacteria: evolving respiratory pathogens in cystic fibrosis: a case report and review. South Med J 2005, 98:657-661. 10.1097/01.SMJ.0000163311.70464.91, 16004174.
-
(2005)
South Med J
, vol.98
, pp. 657-661
-
-
Hayes, D.1
-
7
-
-
0027300451
-
Clinical features of pulmonary disease caused by rapidly growing mycobacteria. An analysis of 154 patients
-
8484642
-
Griffith DE, Girard WM, Wallace RJ. Clinical features of pulmonary disease caused by rapidly growing mycobacteria. An analysis of 154 patients. Am Rev Respir Dis 1993, 147:1271-1278. 10.1164/ajrccm/147.5.1271, 8484642.
-
(1993)
Am Rev Respir Dis
, vol.147
, pp. 1271-1278
-
-
Griffith, D.E.1
Girard, W.M.2
Wallace, R.J.3
-
8
-
-
0037445222
-
Emergence of nontuberculous mycobacteria as pathogens in cystic fibrosis
-
12623856
-
Griffith DE. Emergence of nontuberculous mycobacteria as pathogens in cystic fibrosis. Am J Respir Crit Care Med 2003, 167:810-812. 10.1164/rccm.2301001, 12623856.
-
(2003)
Am J Respir Crit Care Med
, vol.167
, pp. 810-812
-
-
Griffith, D.E.1
-
9
-
-
0037445273
-
Nontuberculous mycobacteria. I: multicenter prevalence study in cystic fibrosis
-
12433668
-
Olivier KN, Weber DJ, Wallace RJ, Faiz AR, Lee JH, Zhang Y, Brown-Elliot BA, Handler A, Wilson RW, Schechter MS, Edwards LJ, Chakraborti S, Knowles MR. Nontuberculous mycobacteria. I: multicenter prevalence study in cystic fibrosis. Am J Respir Crit Care Med 2003, 167:828-834. 10.1164/rccm.200207-678OC, 12433668.
-
(2003)
Am J Respir Crit Care Med
, vol.167
, pp. 828-834
-
-
Olivier, K.N.1
Weber, D.J.2
Wallace, R.J.3
Faiz, A.R.4
Lee, J.H.5
Zhang, Y.6
Brown-Elliot, B.A.7
Handler, A.8
Wilson, R.W.9
Schechter, M.S.10
Edwards, L.J.11
Chakraborti, S.12
Knowles, M.R.13
-
10
-
-
22144468417
-
Age-related prevalence and distribution of nontuberculous mycobacterial species among patients with cystic fibrosis
-
1169165, 16000480
-
Pierre-Audigier C, Ferroni A, Sermet-Gaudelus I, Le Bourgeois M, Offredo C, Vu-Thien H, Fauroux B, Mariani P, Munck A, Bingen E, Guillemot D, Quesne G, Vincent V, Berche P, Gaillard JL. Age-related prevalence and distribution of nontuberculous mycobacterial species among patients with cystic fibrosis. J Clin Microbiol 2005, 43:3467-3470. 10.1128/JCM.43.7.3467-3470.2005, 1169165, 16000480.
-
(2005)
J Clin Microbiol
, vol.43
, pp. 3467-3470
-
-
Pierre-Audigier, C.1
Ferroni, A.2
Sermet-Gaudelus, I.3
Le Bourgeois, M.4
Offredo, C.5
Vu-Thien, H.6
Fauroux, B.7
Mariani, P.8
Munck, A.9
Bingen, E.10
Guillemot, D.11
Quesne, G.12
Vincent, V.13
Berche, P.14
Gaillard, J.L.15
-
11
-
-
33745130407
-
Non-tuberculous mycobacteria in end stage cystic fibrosis: implications for lung transplantation
-
2111233, 16601086
-
Chalermskulrat W, Sood N, Neuringer IP, Hecker TM, Chang L, Rivera MP, Paradowski LJ, Aris RM. Non-tuberculous mycobacteria in end stage cystic fibrosis: implications for lung transplantation. Thorax 2006, 61:507-513. 10.1136/thx.2005.049247, 2111233, 16601086.
-
(2006)
Thorax
, vol.61
, pp. 507-513
-
-
Chalermskulrat, W.1
Sood, N.2
Neuringer, I.P.3
Hecker, T.M.4
Chang, L.5
Rivera, M.P.6
Paradowski, L.J.7
Aris, R.M.8
-
12
-
-
34248584418
-
Molecular epidemiology of Mycobacterium abscessus, with focus on cystic fibrosis
-
1865885, 17376883
-
Jonsson BE, Gilljam M, Lindblad A, Ridell M, Wold AE, Welinder-Olsson C. Molecular epidemiology of Mycobacterium abscessus, with focus on cystic fibrosis. J Clin Microbiol 2007, 45:1497-1504. 10.1128/JCM.02592-06, 1865885, 17376883.
-
(2007)
J Clin Microbiol
, vol.45
, pp. 1497-1504
-
-
Jonsson, B.E.1
Gilljam, M.2
Lindblad, A.3
Ridell, M.4
Wold, A.E.5
Welinder-Olsson, C.6
-
13
-
-
41349117412
-
Multicenter cross-sectional study of nontuberculous mycobacterial infections among cystic fibrosis patients, Israel
-
2570835, 18325250
-
Levy I, Grisaru-Soen G, Lerner-Geva L, Kerem E, Blau H, Bentur L, Aviram M, Rivlin J, Picard E, Lavy A, Yahav Y, Rahav G. Multicenter cross-sectional study of nontuberculous mycobacterial infections among cystic fibrosis patients, Israel. Emerg Infect Dis 2008, 14:378-384. 10.3201/eid1403.061405, 2570835, 18325250.
-
(2008)
Emerg Infect Dis
, vol.14
, pp. 378-384
-
-
Levy, I.1
Grisaru-Soen, G.2
Lerner-Geva, L.3
Kerem, E.4
Blau, H.5
Bentur, L.6
Aviram, M.7
Rivlin, J.8
Picard, E.9
Lavy, A.10
Yahav, Y.11
Rahav, G.12
-
14
-
-
33847050904
-
An official ATS/IDSA statement: diagnosis, treatment, and prevention of nontuberculous mycobacterial diseases
-
17277290, ATS Mycobacterial Diseases Subcommittee
-
Griffith DE, Aksamit T, Brown-Elliott BA, Catanzaro A, Daley C, Gordin F, Holland SM, Horsburgh R, Huitt G, Iademarco MF, Iseman M, Olivier K, Ruoss S, von Reyn CF, Wallace RJ, Winthrop K, . ATS Mycobacterial Diseases Subcommittee An official ATS/IDSA statement: diagnosis, treatment, and prevention of nontuberculous mycobacterial diseases. Am J Respir Crit Care Med 2007, 175:367-416. 10.1164/rccm.200604-571ST, 17277290, ATS Mycobacterial Diseases Subcommittee.
-
(2007)
Am J Respir Crit Care Med
, vol.175
, pp. 367-416
-
-
Griffith, D.E.1
Aksamit, T.2
Brown-Elliott, B.A.3
Catanzaro, A.4
Daley, C.5
Gordin, F.6
Holland, S.M.7
Horsburgh, R.8
Huitt, G.9
Iademarco, M.F.10
Iseman, M.11
Olivier, K.12
Ruoss, S.13
von Reyn, C.F.14
Wallace, R.J.15
Winthrop, K.16
-
15
-
-
79951498706
-
Multilocus sequence analysis and rpoB sequencing of Mycobacterium abscessus (sensu lato) strains
-
3043527, 21106786
-
Macheras E, Roux AL, Bastian S, Leão SC, Palaci M, Sivadon-Tardy V, Gutierrez C, Richter E, Rüsch-Gerdes S, Pfyffer G, Bodmer T, Cambau E, Gaillard JL, Heym B. Multilocus sequence analysis and rpoB sequencing of Mycobacterium abscessus (sensu lato) strains. J Clin Microbiol 2011, 49:491-499. 10.1128/JCM.01274-10, 3043527, 21106786.
-
(2011)
J Clin Microbiol
, vol.49
, pp. 491-499
-
-
Macheras, E.1
Roux, A.L.2
Bastian, S.3
Leão, S.C.4
Palaci, M.5
Sivadon-Tardy, V.6
Gutierrez, C.7
Richter, E.8
Rüsch-Gerdes, S.9
Pfyffer, G.10
Bodmer, T.11
Cambau, E.12
Gaillard, J.L.13
Heym, B.14
-
16
-
-
84871883154
-
Mycobacterium abscessus multispacer sequence typing
-
3564728, 23294800
-
Sassi M, Ben Kahla I, Drancourt M. Mycobacterium abscessus multispacer sequence typing. BMC Microbiol 2013, 13:3. 10.1186/1471-2180-13-3, 3564728, 23294800.
-
(2013)
BMC Microbiol
, vol.13
, pp. 3
-
-
Sassi, M.1
Ben Kahla, I.2
Drancourt, M.3
-
17
-
-
84877584233
-
Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study
-
3664974, 23541540
-
Bryant JM, Grogono DM, Greaves D, Foweraker J, Roddick I, Inns T, Reacher M, Haworth CS, Curran MD, Harris SR, Peacock SJ, Parkhill J, Floto RA. Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study. Lancet 2013, 381:1551-1560. 10.1016/S0140-6736(13)60632-7, 3664974, 23541540.
-
(2013)
Lancet
, vol.381
, pp. 1551-1560
-
-
Bryant, J.M.1
Grogono, D.M.2
Greaves, D.3
Foweraker, J.4
Roddick, I.5
Inns, T.6
Reacher, M.7
Haworth, C.S.8
Curran, M.D.9
Harris, S.R.10
Peacock, S.J.11
Parkhill, J.12
Floto, R.A.13
-
18
-
-
69949109997
-
Characterization of mycobacteria from a major Brazilian outbreak suggests that revision of the taxonomic status of members of the Mycobacterium chelonae-M. abscessus group is needed
-
2738059, 19571015
-
Leao SC, Tortoli E, Viana-Niero C, Ueki SY, Lima KV, Lopes ML, Yubero J, Menendez MC, Garcia MJ. Characterization of mycobacteria from a major Brazilian outbreak suggests that revision of the taxonomic status of members of the Mycobacterium chelonae-M. abscessus group is needed. J Clin Microbiol 2009, 47:2691-2698. 10.1128/JCM.00808-09, 2738059, 19571015.
-
(2009)
J Clin Microbiol
, vol.47
, pp. 2691-2698
-
-
Leao, S.C.1
Tortoli, E.2
Viana-Niero, C.3
Ueki, S.Y.4
Lima, K.V.5
Lopes, M.L.6
Yubero, J.7
Menendez, M.C.8
Garcia, M.J.9
-
19
-
-
80054753988
-
Proposal that Mycobacterium massiliense and Mycobacterium bolletii be united and reclassified as Mycobacterium abscessus subsp. bolletii comb. nov., designation of Mycobacterium abscessus subsp. abscessus subsp. nov. and emended description of Mycobacterium abscessus
-
21037035
-
Leao SC, Tortoli E, Euzéby JP, Garcia MJ. Proposal that Mycobacterium massiliense and Mycobacterium bolletii be united and reclassified as Mycobacterium abscessus subsp. bolletii comb. nov., designation of Mycobacterium abscessus subsp. abscessus subsp. nov. and emended description of Mycobacterium abscessus. Int J Syst Evol Microbiol 2011, 61:2311-2313. 10.1099/ijs.0.023770-0, 21037035.
-
(2011)
Int J Syst Evol Microbiol
, vol.61
, pp. 2311-2313
-
-
Leao, S.C.1
Tortoli, E.2
Euzéby, J.P.3
Garcia, M.J.4
-
20
-
-
84896703771
-
The genome sequence of 'Mycobacterium massiliense' strain CIP 108297 suggests the independent taxonomic status of the Mycobacterium abscessus complex at the subspecies level
-
3842311, 24312320
-
Cho YJ, Yi H, Chun J, Cho SN, Daley CL, Koh WJ, Jae Shin S. The genome sequence of 'Mycobacterium massiliense' strain CIP 108297 suggests the independent taxonomic status of the Mycobacterium abscessus complex at the subspecies level. PLoS One 2013, 8:e81560. 10.1371/journal.pone.0081560, 3842311, 24312320.
-
(2013)
PLoS One
, vol.8
, pp. e81560
-
-
Cho, Y.J.1
Yi, H.2
Chun, J.3
Cho, S.N.4
Daley, C.L.5
Koh, W.J.6
Jae Shin, S.7
-
21
-
-
31144445851
-
RpoB gene sequence- based characterization of emerging non-tuberculous mycobacteria with descriptions of Mycobacterium bolletii sp. nov., Mycobacterium phocaicum sp. nov. and Mycobacterium aubagnense sp. nov
-
16403878
-
Adekambi T, Berger P, Raoult D, Drancourt M. rpoB gene sequence- based characterization of emerging non-tuberculous mycobacteria with descriptions of Mycobacterium bolletii sp. nov., Mycobacterium phocaicum sp. nov. and Mycobacterium aubagnense sp. nov. Int J Syst Evol Microbiol 2006, 56:133-143. 10.1099/ijs.0.63969-0, 16403878.
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 133-143
-
-
Adekambi, T.1
Berger, P.2
Raoult, D.3
Drancourt, M.4
-
22
-
-
10844276234
-
Amoebal coculture of " Mycobacterium massiliense" sp. nov. from the sputum of a patient with hemoptoic pneumonia
-
535245, 15583272
-
Adekambi T, Reynaud-Gaubert M, Greub G, Gevaudan MJ, La Scola B, Raoult D, Drancourt M. Amoebal coculture of " Mycobacterium massiliense" sp. nov. from the sputum of a patient with hemoptoic pneumonia. J Clin Microbiol 2004, 42:5493-5501. 10.1128/JCM.42.12.5493-5501.2004, 535245, 15583272.
-
(2004)
J Clin Microbiol
, vol.42
, pp. 5493-5501
-
-
Adekambi, T.1
Reynaud-Gaubert, M.2
Greub, G.3
Gevaudan, M.J.4
La Scola, B.5
Raoult, D.6
Drancourt, M.7
-
23
-
-
84880296424
-
The First Structure of a Mycobacteriophage, the Mycobacterium abscessus subsp. bolletii Phage Araucaria
-
3700213, 23678183
-
Sassi M, Bebeacua C, Drancourt M, Cambillau C. The First Structure of a Mycobacteriophage, the Mycobacterium abscessus subsp. bolletii Phage Araucaria. J Virol 2013, 87:8099-8109. 10.1128/JVI.01209-13, 3700213, 23678183.
-
(2013)
J Virol
, vol.87
, pp. 8099-8109
-
-
Sassi, M.1
Bebeacua, C.2
Drancourt, M.3
Cambillau, C.4
-
24
-
-
77956193448
-
ProgressiveMauve: multiple genome alignment with gene gain, loss and rearrangement
-
2892488, 20593022
-
Darling AE, Mau B, Perna NT. ProgressiveMauve: multiple genome alignment with gene gain, loss and rearrangement. PLoS One 2010, 5:e11147. 10.1371/journal.pone.0011147, 2892488, 20593022.
-
(2010)
PLoS One
, vol.5
, pp. e11147
-
-
Darling, A.E.1
Mau, B.2
Perna, N.T.3
-
25
-
-
79959979274
-
PHAST: a fast phage search tool
-
Web Server issue, 3125810, 21672955
-
Zhou Y, Liang Y, Lynch KH, Dennis JJ, Wishart DS. PHAST: a fast phage search tool. Nucleic Acids Res 2011, 39:W347-W352. Web Server issue, 10.1093/nar/gkr485, 3125810, 21672955.
-
(2011)
Nucleic Acids Res
, vol.39
, pp. W347-W352
-
-
Zhou, Y.1
Liang, Y.2
Lynch, K.H.3
Dennis, J.J.4
Wishart, D.S.5
-
26
-
-
77952299957
-
Prodigal: prokaryotic gene recognition and translation initiation site identification
-
2848648, 20211023
-
Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ. Prodigal: prokaryotic gene recognition and translation initiation site identification. BMC Bioinformatics 2010, 11:119. 10.1186/1471-2105-11-119, 2848648, 20211023.
-
(2010)
BMC Bioinformatics
, vol.11
, pp. 119
-
-
Hyatt, D.1
Chen, G.L.2
Locascio, P.F.3
Land, M.L.4
Larimer, F.W.5
Hauser, L.J.6
-
27
-
-
34547579396
-
CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats
-
Web Server issue), 1933234, 17537822
-
Grissa I, Vergnaud G, Pourcel C. CRISPRFinder: a web tool to identify clustered regularly interspaced short palindromic repeats. Nucleic Acids Res 2007, 35:W52-W57. Web Server issue), 10.1093/nar/gkm360, 1933234, 17537822.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. W52-W57
-
-
Grissa, I.1
Vergnaud, G.2
Pourcel, C.3
-
28
-
-
30744470609
-
Application of Phylogenetic Networks in Evolutionary Studies
-
Huson DH, Bryant D. Application of Phylogenetic Networks in Evolutionary Studies. Mol Biol Evol 2006, 23:254-267.
-
(2006)
Mol Biol Evol
, vol.23
, pp. 254-267
-
-
Huson, D.H.1
Bryant, D.2
-
29
-
-
0141519279
-
OrthoMCL: identification of ortholog groups for eukaryotic genomes
-
403725, 12952885
-
Li L, Stoeckert J, Christian J, Roos DS. OrthoMCL: identification of ortholog groups for eukaryotic genomes. Genome Res 2003, 13:2178-2189. 10.1101/gr.1224503, 403725, 12952885.
-
(2003)
Genome Res
, vol.13
, pp. 2178-2189
-
-
Li, L.1
Stoeckert, J.2
Christian, J.3
Roos, D.S.4
-
30
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
146917, 9254694
-
Altschul SF, Madden TL, Schäffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25:3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
32
-
-
0032900532
-
Genome phylogeny based on gene content
-
Snel B, Bork P, Huynen MA. Genome phylogeny based on gene content. Nat Genet 1999, 1:108-111.
-
(1999)
Nat Genet
, vol.1
, pp. 108-111
-
-
Snel, B.1
Bork, P.2
Huynen, M.A.3
-
33
-
-
79551682170
-
Gene gain and loss events in Rickettsia and Orientia species
-
3055210, 21303508
-
Georgiades K, Merhej V, El Karkouri K, Raoult D, Pontarotti P. Gene gain and loss events in Rickettsia and Orientia species. Biol Direct 2011, 6:6. 10.1186/1745-6150-6-6, 3055210, 21303508.
-
(2011)
Biol Direct
, vol.6
, pp. 6
-
-
Georgiades, K.1
Merhej, V.2
El Karkouri, K.3
Raoult, D.4
Pontarotti, P.5
-
34
-
-
74249106740
-
PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees
-
2759962, 19765311
-
Gouret P, Thompson JD, Pontarotti P. PhyloPattern: regular expressions to identify complex patterns in phylogenetic trees. BMC Bioinformatics 2009, 10:298. 10.1186/1471-2105-10-298, 2759962, 19765311.
-
(2009)
BMC Bioinformatics
, vol.10
, pp. 298
-
-
Gouret, P.1
Thompson, J.D.2
Pontarotti, P.3
-
35
-
-
84870953041
-
An automated approach for the identification of horizontal gene transfers from complete genomes reveals the rhizome of Rickettsiales
-
3575314, 23234643
-
Le PT, Ramulu HG, Guijarro L, Paganini J, Gouret P, Chabrol O, Raoult D, Pontarotti P. An automated approach for the identification of horizontal gene transfers from complete genomes reveals the rhizome of Rickettsiales. BMC Evol Biol 2012, 12:243. 10.1186/1471-2148-12-243, 3575314, 23234643.
-
(2012)
BMC Evol Biol
, vol.12
, pp. 243
-
-
Le, P.T.1
Ramulu, H.G.2
Guijarro, L.3
Paganini, J.4
Gouret, P.5
Chabrol, O.6
Raoult, D.7
Pontarotti, P.8
-
36
-
-
25444473119
-
FIGENIX: intelligent automation of genomic annotation: expertise integration in a new software platform
-
1188056, 16083500
-
Gouret P, Vitiello V, Balandraud N, Gilles A, Pontarotti P, Danchin EG. FIGENIX: intelligent automation of genomic annotation: expertise integration in a new software platform. BMC Bioinformatics 2005, 6:198. 10.1186/1471-2105-6-198, 1188056, 16083500.
-
(2005)
BMC Bioinformatics
, vol.6
, pp. 198
-
-
Gouret, P.1
Vitiello, V.2
Balandraud, N.3
Gilles, A.4
Pontarotti, P.5
Danchin, E.G.6
-
37
-
-
84879061415
-
Phage cluster relationships identified through single gene analysis
-
3698066, 23777341
-
Smith KC, Castro-Nallar E, Fisher JN, Breakwell DP, Grose JH, Burnett SH. Phage cluster relationships identified through single gene analysis. BMC Genomics 2013, 14:410. 10.1186/1471-2164-14-410, 3698066, 23777341.
-
(2013)
BMC Genomics
, vol.14
, pp. 410
-
-
Smith, K.C.1
Castro-Nallar, E.2
Fisher, J.N.3
Breakwell, D.P.4
Grose, J.H.5
Burnett, S.H.6
-
38
-
-
84866334447
-
Annotated genome sequence of Mycobacterium massiliense strain M154, belonging to the recently created taxon Mycobacterium abscessus subsp. bolletii comb. nov
-
3415528, 22887675
-
Choo SW, Wong YL, Tan JL, Ong CS, Wong GJ, Ng KP, Ngeow YF. Annotated genome sequence of Mycobacterium massiliense strain M154, belonging to the recently created taxon Mycobacterium abscessus subsp. bolletii comb. nov. J Bacteriol 2012, 194:4778. 10.1128/JB.01043-12, 3415528, 22887675.
-
(2012)
J Bacteriol
, vol.194
, pp. 4778
-
-
Choo, S.W.1
Wong, Y.L.2
Tan, J.L.3
Ong, C.S.4
Wong, G.J.5
Ng, K.P.6
Ngeow, Y.F.7
-
39
-
-
84900870131
-
Genome analysis reveals three genomospecies in Mycobacterium abscessus
-
4035080, 24886480
-
Sassi M, Drancourt M. Genome analysis reveals three genomospecies in Mycobacterium abscessus. BMC Genomics 2014, 15:359. 10.1186/1471-2164-15-359, 4035080, 24886480.
-
(2014)
BMC Genomics
, vol.15
, pp. 359
-
-
Sassi, M.1
Drancourt, M.2
-
40
-
-
84878168552
-
CRISPR-Cas: evolution of an RNA-based adaptive immunity system in prokaryotes
-
3737325, 23439366
-
Koonin EV, Makarova KS. CRISPR-Cas: evolution of an RNA-based adaptive immunity system in prokaryotes. RNA Biol 2013, 10:679-686. 10.4161/rna.24022, 3737325, 23439366.
-
(2013)
RNA Biol
, vol.10
, pp. 679-686
-
-
Koonin, E.V.1
Makarova, K.S.2
-
41
-
-
33748775169
-
Survival of environmental mycobacteria in Acanthamoeba polyphaga
-
1563627, 16957218
-
Adékambi T, Ben Salah S, Khlif M, Raoult D, Drancourt M. Survival of environmental mycobacteria in Acanthamoeba polyphaga. Appl Environ Microbiol 2006, 72:5974-5981. 10.1128/AEM.03075-05, 1563627, 16957218.
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 5974-5981
-
-
Adékambi, T.1
Ben Salah, S.2
Khlif, M.3
Raoult, D.4
Drancourt, M.5
-
42
-
-
74549151848
-
Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms
-
2799887, 20007369
-
Boyer M, Yutin N, Pagnier I, Barrassi L, Fournous G, Espinosa L, Robert C, Azza S, Sun S, Rossmann MG, Suzan-Monti M, La Scola B, Koonin EV, Raoult D. Giant Marseillevirus highlights the role of amoebae as a melting pot in emergence of chimeric microorganisms. Proc Natl Acad Sci U S A 2009, 106:21848-21853. 10.1073/pnas.0911354106, 2799887, 20007369.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 21848-21853
-
-
Boyer, M.1
Yutin, N.2
Pagnier, I.3
Barrassi, L.4
Fournous, G.5
Espinosa, L.6
Robert, C.7
Azza, S.8
Sun, S.9
Rossmann, M.G.10
Suzan-Monti, M.11
La Scola, B.12
Koonin, E.V.13
Raoult, D.14
-
43
-
-
79251523486
-
The genome of the amoeba symbiont "Candidatus Amoebophilus asiaticus" encodes an afp-like prophage possibly used for protein secretion
-
21178499
-
Penz T, Horn M, Schmitz-Esser S. The genome of the amoeba symbiont "Candidatus Amoebophilus asiaticus" encodes an afp-like prophage possibly used for protein secretion. Virulence 2010, 1:541-545. 10.4161/viru.1.6.13800, 21178499.
-
(2010)
Virulence
, vol.1
, pp. 541-545
-
-
Penz, T.1
Horn, M.2
Schmitz-Esser, S.3
-
44
-
-
77953700954
-
Gene exchange and the origin of giant viruses
-
20551687
-
Filée J, Chandler M. Gene exchange and the origin of giant viruses. Intervirology 2010, 53:354-361. 10.1159/000312920, 20551687.
-
(2010)
Intervirology
, vol.53
, pp. 354-361
-
-
Filée, J.1
Chandler, M.2
-
45
-
-
77953710766
-
Gene repertoire of amoeba-associated giant viruses
-
20551685
-
Colson P, Raoult D. Gene repertoire of amoeba-associated giant viruses. Intervirology 2010, 53:330-343. 10.1159/000312918, 20551685.
-
(2010)
Intervirology
, vol.53
, pp. 330-343
-
-
Colson, P.1
Raoult, D.2
-
46
-
-
77953694345
-
Amoeba/amoebal symbiont genetic transfers: lessons from giant virus neighbours
-
20551677
-
Thomas V, Greub G. Amoeba/amoebal symbiont genetic transfers: lessons from giant virus neighbours. Intervirology 2010, 53:254-267. 10.1159/000312910, 20551677.
-
(2010)
Intervirology
, vol.53
, pp. 254-267
-
-
Thomas, V.1
Greub, G.2
-
47
-
-
84879996480
-
Lateral gene exchanges shape the genomes of amoeba-resisting microorganisms
-
3423634, 22919697
-
Bertelli C, Greub G. Lateral gene exchanges shape the genomes of amoeba-resisting microorganisms. Front Cell Infect Microbiol 2012, 2:110. 3423634, 22919697.
-
(2012)
Front Cell Infect Microbiol
, vol.2
, pp. 110
-
-
Bertelli, C.1
Greub, G.2
-
48
-
-
84875785122
-
Amoebae as battlefields for bacteria, giant viruses, and virophages
-
3624401, 23388714
-
Slimani M, Pagnier I, Raoult D, La Scola B. Amoebae as battlefields for bacteria, giant viruses, and virophages. J Virol 2013, 87:4783-4785. 10.1128/JVI.02948-12, 3624401, 23388714.
-
(2013)
J Virol
, vol.87
, pp. 4783-4785
-
-
Slimani, M.1
Pagnier, I.2
Raoult, D.3
La Scola, B.4
-
49
-
-
80053377130
-
Bacteriophages and their genomes
-
3199584, 22034588
-
Hatfull GF, Hendrix RW. Bacteriophages and their genomes. Curr Opin Virol 2011, 1:298-303. 10.1016/j.coviro.2011.06.009, 3199584, 22034588.
-
(2011)
Curr Opin Virol
, vol.1
, pp. 298-303
-
-
Hatfull, G.F.1
Hendrix, R.W.2
-
50
-
-
84858273407
-
The secret lives of mycobacteriophages
-
Hatfull GF. The secret lives of mycobacteriophages. Adv Virus Res 2012, 82:179-288.
-
(2012)
Adv Virus Res
, vol.82
, pp. 179-288
-
-
Hatfull, G.F.1
-
51
-
-
34548513271
-
Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution
-
17805294
-
Lindell D, Jaffe JD, Coleman ML, Futschik ME, Axmann IM, Rector T, Kettler G, Sullivan MB, Steen R, Hess WR, Church GM, Chisholm SW. Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution. Nature 2007, 449:83-86. 10.1038/nature06130, 17805294.
-
(2007)
Nature
, vol.449
, pp. 83-86
-
-
Lindell, D.1
Jaffe, J.D.2
Coleman, M.L.3
Futschik, M.E.4
Axmann, I.M.5
Rector, T.6
Kettler, G.7
Sullivan, M.B.8
Steen, R.9
Hess, W.R.10
Church, G.M.11
Chisholm, S.W.12
|