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Volumn 141, Issue 20, 2014, Pages 3988-3993

Translational profiling through biotinylation of tagged ribosomes in zebrafish

Author keywords

BirA; Gene expression profiling; Muscle development; TRAP

Indexed keywords

BIOTIN; LIGASE; MESSENGER RNA; PROTEIN BIRA; RIBOSOMAL PROTEIN L10A; RIBOSOME PROTEIN; UNCLASSIFIED DRUG; BIOTIN-COA LIGASE; GREEN FLUORESCENT PROTEIN; LONG CHAIN FATTY ACID COENZYME A LIGASE; RNA BINDING PROTEIN; RPL10A PROTEIN, ZEBRAFISH; ZEBRAFISH PROTEIN;

EID: 84908112478     PISSN: 09501991     EISSN: 14779129     Source Type: Journal    
DOI: 10.1242/dev.111849     Document Type: Article
Times cited : (16)

References (27)
  • 1
    • 0034234236 scopus 로고    scopus 로고
    • Coregulation of anterior and posterior mesendodermal development by a hairyrelated transcriptional repressor
    • Bally-Cuif, L., Goutel, C., Wassef, M., Wurst, W. and Rosa, F. (2000). Coregulation of anterior and posterior mesendodermal development by a hairyrelated transcriptional repressor. Genes Dev. 14, 1664-1677.
    • (2000) Genes Dev , vol.14 , pp. 1664-1677
    • Bally-Cuif, L.1    Goutel, C.2    Wassef, M.3    Wurst, W.4    Rosa, F.5
  • 2
    • 0032796828 scopus 로고    scopus 로고
    • Regulation of midline development by antagonism of lefty and nodal signaling
    • Bisgrove, B. W., Essner, J. J. and Yost, H. J. (1999). Regulation of midline development by antagonism of lefty and nodal signaling. Development 126, 3253-3262.
    • (1999) Development , vol.126 , pp. 3253-3262
    • Bisgrove, B.W.1    Essner, J.J.2    Yost, H.J.3
  • 3
    • 0030589712 scopus 로고    scopus 로고
    • Tbx6,a mouse T-box gene implicated in paraxial mesoderm formation at gastrulation
    • Chapman, D. L., Agulnik, I., Hancock, S., Silver, L. M. and Papaioannou, V. E. (1996). Tbx6,a mouse T-box gene implicated in paraxial mesoderm formation at gastrulation. Dev. Biol. 180, 534-542.
    • (1996) Dev. Biol , vol.180 , pp. 534-542
    • Chapman, D.L.1    Agulnik, I.2    Hancock, S.3    Silver, L.M.4    Papaioannou, V.E.5
  • 4
    • 33646913849 scopus 로고    scopus 로고
    • The caudal-related homeobox genes cdx1a and cdx4 act redundantly to regulate hox gene expression and the formation of putative hematopoietic stem cells during zebrafish embryogenesis
    • Davidson, A. J. and Zon, L. I. (2006). The caudal-related homeobox genes cdx1a and cdx4 act redundantly to regulate hox gene expression and the formation of putative hematopoietic stem cells during zebrafish embryogenesis. Dev. Biol. 292, 506-518.
    • (2006) Dev. Biol , vol.292 , pp. 506-518
    • Davidson, A.J.1    Zon, L.I.2
  • 5
    • 84882359496 scopus 로고    scopus 로고
    • Translational profiling of cardiomyocytes identifies an early Jak1/Stat3 injury response required for zebrafish heart regeneration
    • Fang, Y., Gupta, V., Karra, R., Holdway, J. E., Kikuchi, K. and Poss, K. D. (2013). Translational profiling of cardiomyocytes identifies an early Jak1/Stat3 injury response required for zebrafish heart regeneration. Proc. Natl. Acad. Sci. USA 110, 13416-13421.
    • (2013) Proc. Natl. Acad. Sci. USA , vol.110 , pp. 13416-13421
    • Fang, Y.1    Gupta, V.2    Karra, R.3    Holdway, J.E.4    Kikuchi, K.5    Poss, K.D.6
  • 7
    • 0031692014 scopus 로고    scopus 로고
    • Molecular identification of spadetail: Regulation of zebrafish trunk and tail mesoderm formation by T-box genes
    • Griffin, K. J., Amacher, S. L., Kimmel, C. B. and Kimelman, D. (1998). Molecular identification of spadetail: regulation of zebrafish trunk and tail mesoderm formation by T-box genes. Development 125, 3379-3388.
    • (1998) Development , vol.125 , pp. 3379-3388
    • Griffin, K.J.1    Amacher, S.L.2    Kimmel, C.B.3    Kimelman, D.4
  • 9
    • 0036679340 scopus 로고    scopus 로고
    • Two linked hairy/Enhancer of split-related zebrafish genes, her1 and her7, function together to refine alternating somite boundaries
    • Henry, C. A., Urban, M. K., Dill, K. K., Merlie, J. P., Page, M. F., Kimmel, C. B. and Amacher, S. L. (2002). Two linked hairy/Enhancer of split-related zebrafish genes, her1 and her7, function together to refine alternating somite boundaries. Development 129, 3693-3704.
    • (2002) Development , vol.129 , pp. 3693-3704
    • Henry, C.A.1    Urban, M.K.2    Dill, K.K.3    Merlie, J.P.4    Page, M.F.5    Kimmel, C.B.6    Amacher, S.L.7
  • 10
    • 34249096783 scopus 로고    scopus 로고
    • Intranucleolar sites of ribosome biogenesis defined by the localization of early binding ribosomal proteins
    • Krüger, T., Zentgraf, H. and Scheer, U. (2007). Intranucleolar sites of ribosome biogenesis defined by the localization of early binding ribosomal proteins. J. Cell Biol. 177, 573-578.
    • (2007) J. Cell Biol , vol.177 , pp. 573-578
    • Krüger, T.1    Zentgraf, H.2    Scheer, U.3
  • 11
    • 24044552183 scopus 로고    scopus 로고
    • Identification of ciliated sensory neuron-expressed genes in Caenorhabditis elegans using targeted pulldown of poly(A) tails
    • Kunitomo, H., Uesugi, H., Kohara, Y. and Iino, Y. (2005). Identification of ciliated sensory neuron-expressed genes in Caenorhabditis elegans using targeted pulldown of poly(A) tails. Genome Biol. 6, R17.
    • (2005) Genome Biol , vol.6
    • Kunitomo, H.1    Uesugi, H.2    Kohara, Y.3    Iino, Y.4
  • 12
    • 0031970081 scopus 로고    scopus 로고
    • Isolation of the zebrafish homologues for the tie-1 and tie-2 endothelium-specific receptor tyrosine kinases
    • Lyons, M. S., Bell, B., Stainier, D. and Peters, K. G. (1998). Isolation of the zebrafish homologues for the tie-1 and tie-2 endothelium-specific receptor tyrosine kinases. Dev. Dyn. 212, 133-140.
    • (1998) Dev. Dyn , vol.212 , pp. 133-140
    • Lyons, M.S.1    Bell, B.2    Stainier, D.3    Peters, K.G.4
  • 13
    • 67349288523 scopus 로고    scopus 로고
    • TU-tagging: Cell type specific RNA isolation from intact complex tissues
    • Miller, M. R., Robinson, K. J., Cleary, M. D. and Doe, C. Q. (2009). TU-tagging: cell type specific RNA isolation from intact complex tissues. Nat. Methods 6, 439-441.
    • (2009) Nat. Methods , vol.6 , pp. 439-441
    • Miller, M.R.1    Robinson, K.J.2    Cleary, M.D.3    Doe, C.Q.4
  • 14
    • 34848897173 scopus 로고    scopus 로고
    • A role for the Myoblast city homologues Dock1 and Dock5 and the adaptor proteins Crk and Crk-like in zebrafish myoblast fusion
    • Moore, C. A., Parkin, C. A., Bidet, Y. and Ingham, P. W. (2007). A role for the Myoblast city homologues Dock1 and Dock5 and the adaptor proteins Crk and Crk-like in zebrafish myoblast fusion. Development 134, 3145-3153.
    • (2007) Development , vol.134 , pp. 3145-3153
    • Moore, C.A.1    Parkin, C.A.2    Bidet, Y.3    Ingham, P.W.4
  • 15
    • 34248582613 scopus 로고    scopus 로고
    • The negative regulation of Mesp2 by mouse Ripply2 is required to establish the rostro-caudal patterning within a somite
    • Morimoto, M., Sasaki, N., Oginuma, M., Kiso, M., Igarashi, K., Aizaki, K.-I., Kanno, J. and Saga, Y. (2007). The negative regulation of Mesp2 by mouse Ripply2 is required to establish the rostro-caudal patterning within a somite. Development 134, 1561-1569.
    • (2007) Development , vol.134 , pp. 1561-1569
    • Morimoto, M.1    Sasaki, N.2    Oginuma, M.3    Kiso, M.4    Igarashi, K.5    Aizaki, K.-I.6    Kanno, J.7    Saga, Y.8
  • 16
    • 0030057801 scopus 로고    scopus 로고
    • Expression domains of a zebrafish homologue of the Drosophila pair-rule gene hairy correspond to primordia of alternating somites
    • Muller, M., Weizsacker, E. and Campos-Ortega, J. A. (1996). Expression domains of a zebrafish homologue of the Drosophila pair-rule gene hairy correspond to primordia of alternating somites. Development 122, 2071-2078.
    • (1996) Development , vol.122 , pp. 2071-2078
    • Muller, M.1    Weizsacker, E.2    Campos-Ortega, J.A.3
  • 17
    • 0347125312 scopus 로고    scopus 로고
    • RPG: The ribosomal protein gene database
    • Nakao, A., Yoshihama, M. and Kenmochi, N. (2004). RPG: the ribosomal protein gene database. Nucleic Acids Res. 32, D168-D170.
    • (2004) Nucleic Acids Res , vol.32 , pp. D168-D170
    • Nakao, A.1    Yoshihama, M.2    Kenmochi, N.3
  • 18
    • 0037194732 scopus 로고    scopus 로고
    • Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans
    • Roy, P. J., Stuart, J. M., Lund, J. and Kim, S. K. (2002). Chromosomal clustering of muscle-expressed genes in Caenorhabditis elegans. Nature 418, 975-979.
    • (2002) Nature , vol.418 , pp. 975-979
    • Roy, P.J.1    Stuart, J.M.2    Lund, J.3    Kim, S.K.4
  • 19
    • 0034090969 scopus 로고    scopus 로고
    • Zebrafish Mesp family genes, mesp-a and mesp-b are segmentally expressed in the presomitic mesoderm, and Mesp-b confers the anterior identity to the developing somites
    • Sawada, A., Fritz, A., Jiang, Y., Yamamoto, A., Yamasu, K., Kuroiwa, A., Saga, Y. and Takeda, H. (2000). Zebrafish Mesp family genes, mesp-a and mesp-b are segmentally expressed in the presomitic mesoderm, and Mesp-b confers the anterior identity to the developing somites. Development 127, 1691-1702.
    • (2000) Development , vol.127 , pp. 1691-1702
    • Sawada, A.1    Fritz, A.2    Jiang, Y.3    Yamamoto, A.4    Yamasu, K.5    Kuroiwa, A.6    Saga, Y.7    Takeda, H.8
  • 20
    • 0036804621 scopus 로고    scopus 로고
    • A novel repressor-type homeobox gene, ved, is involved in dharma/bozozokmediated dorsal organizer formation in zebrafish
    • Shimizu, T., Yamanaka, Y., Nojima, H., Yabe, T., Hibi, M. and Hirano, T. (2002). A novel repressor-type homeobox gene, ved, is involved in dharma/bozozokmediated dorsal organizer formation in zebrafish. Mech. Dev. 118, 125-138.
    • (2002) Mech. Dev , vol.118 , pp. 125-138
    • Shimizu, T.1    Yamanaka, Y.2    Nojima, H.3    Yabe, T.4    Hibi, M.5    Hirano, T.6
  • 21
    • 0026039487 scopus 로고
    • Injected Wnt RNA induces a complete body axis in Xenopus embryos
    • Sokol, S., Christian, J. L., Moon, R. T. and Melton, D. A. (1991). Injected Wnt RNA induces a complete body axis in Xenopus embryos. Cell 67, 741-752.
    • (1991) Cell , vol.67 , pp. 741-752
    • Sokol, S.1    Christian, J.L.2    Moon, R.T.3    Melton, D.A.4
  • 22
    • 38149126474 scopus 로고    scopus 로고
    • High-resolution in situ hybridization to wholemount zebrafish embryosNat
    • Thisse, C. and Thisse, B. (2008). High-resolution in situ hybridization to wholemount zebrafish embryos. Nat. Protoc. 3, 59-69.
    • (2008) Protoc , vol.3 , pp. 59-69
    • Thisse, C.1    Thisse, B.2
  • 23
    • 84875035766 scopus 로고    scopus 로고
    • Development of translating ribosome affinity purification for zebrafish
    • Tryon, R. C., Pisat, N., Johnson, S. L. and Dougherty, J. D. (2013). Development of translating ribosome affinity purification for zebrafish. Genesis 51, 187-192.
    • (2013) Genesis , vol.51 , pp. 187-192
    • Tryon, R.C.1    Pisat, N.2    Johnson, S.L.3    Dougherty, J.D.4
  • 24
    • 33750433896 scopus 로고    scopus 로고
    • Functional dissection of the Tol2 transposable element identified the minimal cis-sequence and a highly repetitive sequence in the subterminal region essential for transposition
    • Urasaki, A., Morvan, G. and Kawakami, K. (2006). Functional dissection of the Tol2 transposable element identified the minimal cis-sequence and a highly repetitive sequence in the subterminal region essential for transposition. Genetics 174, 639-649.
    • (2006) Genetics , vol.174 , pp. 639-649
    • Urasaki, A.1    Morvan, G.2    Kawakami, K.3
  • 26
    • 0018140454 scopus 로고
    • Panning” for lymphocytes: A method for cell selection
    • Wysocki, L. J. and Sato, V.L. (1978). “Panning” for lymphocytes: a method for cell selection. Proc. Natl. Acad. Sci. USA 75, 2844-2848.
    • (1978) Proc. Natl. Acad. Sci. USA , vol.75 , pp. 2844-2848
    • Wysocki, L.J.1    Sato, V.L.2
  • 27
    • 0034671579 scopus 로고    scopus 로고
    • The bHLH regulator pMesogenin1 is required for maturation and segmentation of paraxial mesoderm
    • Yoon, J. K. and Wold, B. (2000). The bHLH regulator pMesogenin1 is required for maturation and segmentation of paraxial mesoderm. Genes Dev. 14, 3204-3214.
    • (2000) Genes Dev , vol.14 , pp. 3204-3214
    • Yoon, J.K.1    Wold, B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.